FFCP PHASE1:Hg19::chr8:143781513..143781568,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:143781513..143781568,+
|short_description=p1@LY6K
|description=CAGE_peak_1_at_LY6K_5end
|association_with_transcript=0bp_to_ENST00000292430,ENST00000518841...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54742 | |EntrezGene=54742 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24225 | |HGNC=24225 | ||
|TSSclassifier=strong | |||
|UniProt=Q17RY6,E5RGJ8,G3V116 | |UniProt=Q17RY6,E5RGJ8,G3V116 | ||
|association_with_transcript=0bp_to_ENST00000292430,ENST00000518841,ENST00000519387,ENST00000561179,NM_001160354,NM_001160355,NM_017527,uc011ljv.1,uc011ljw.1,uc011ljx.1_5end | |||
|cluster_id=chr8:143781513..143781568,+ | |||
|description=CAGE_peak_1_at_LY6K_5end | |||
|id=chr8:143781513..143781568,+ | |||
|ontology_enrichment_celltype=CL:0000548!4.91e-20!679;CL:0000004!4.91e-20!679;CL:0000255!4.91e-20!679;CL:0000012!1.28e-19!682;CL:0000055!8.13e-15!180;CL:0002371!3.41e-13!591;CL:0000144!2.25e-12!625;CL:0000003!2.68e-11!722;CL:0000057!3.97e-11!75;CL:0000063!2.34e-08!578;CL:0000066!3.02e-08!254;CL:0002620!3.39e-08!23;CL:0000860!2.48e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.91e-10;33!CL:0002057;4.91e-10;33!CL:0002620;2.00e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.19e-10,76;CL:0002620,2.06e-09,23;CL:0000066,2.57e-08,253;CL:0000860,1.59e-07,42;CL:0002057,1.59e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.65e-13!95;UBERON:0000914!2.46e-12!83;UBERON:0002329!2.46e-12!83;UBERON:0003077!2.46e-12!83;UBERON:0003059!2.46e-12!83;UBERON:0007282!2.46e-12!83;UBERON:0009618!2.46e-12!83;UBERON:0007285!2.46e-12!83;UBERON:0000468!5.09e-12!659;UBERON:0000486!1.31e-11!82;UBERON:0000926!2.58e-11!448;UBERON:0004120!2.58e-11!448;UBERON:0006603!2.58e-11!448;UBERON:0000467!1.11e-10!625;UBERON:0000480!1.72e-10!626;UBERON:0002204!1.40e-09!167;UBERON:0002199!3.39e-09!45;UBERON:0002416!3.39e-09!45;UBERON:0002097!3.70e-09!40;UBERON:0004290!8.25e-09!70;UBERON:0000922!2.45e-08!612;UBERON:0002050!2.73e-08!605;UBERON:0005423!2.73e-08!605;UBERON:0000923!2.89e-08!604;UBERON:0005291!2.89e-08!604;UBERON:0006598!2.89e-08!604;UBERON:0002532!2.89e-08!604;UBERON:0001737!3.97e-08!9;UBERON:0003104!8.06e-08!238;UBERON:0009142!8.06e-08!238;UBERON:0005256!1.50e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.61e-09;9!UBERON:0001557;3.61e-09;9!UBERON:0000075;5.35e-08;16!UBERON:0003102;7.85e-08;50!UBERON:0002097;8.22e-08;41!UBERON:0002199;6.43e-07;46!UBERON:0002416;6.43e-07;46!UBERON:0002067;8.16e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.84e-13,99;UBERON:0000486,4.69e-12,83;UBERON:0002204,2.04e-11,167;UBERON:0007503,4.57e-10,78;UBERON:0002199,6.79e-10,46;UBERON:0002416,6.79e-10,46;UBERON:0002097,1.11e-09,41;UBERON:0001737,3.64e-09,9;UBERON:0002329,7.90e-09,71;UBERON:0003059,7.90e-09,71;UBERON:0007282,7.90e-09,71;UBERON:0004290,7.90e-09,71;UBERON:0009618,7.90e-09,71;UBERON:0007524,1.10e-08,73;UBERON:0003077,1.70e-08,72;UBERON:0007285,1.70e-08,72;UBERON:0000075,4.88e-08,16;UBERON:0002067,8.07e-07,9;UBERON:0004016,8.07e-07,9;UBERON:0010083,8.07e-07,9 | |||
|phase1_expression=1.99846217197612,1.71280419112787,0.563817616383885,0,0,0,0,4.42203911398782,2.08948502559871,0.737201809504527,3.48900583986214,3.71350332621293,2.63766978228454,76.4876061293088,78.2097806717881,0,0,0,0,3.20114750999649,13.4640456221207,1.25381888591235,0.286235987131057,1.09499540058307,2.88748071068046,0,0,0,1.18009283054671,0,1.23852898652861,17.4690032650996,11.4458249135735,1.10926203050036,0,0,0,3.87796785972314,0.200544447470142,1.95309783644267,0,0,0,2.03557534291391,5.66813915533214,1.4555043671269,3.48643555358527,11.9238687526329,7.74265927237759,5.75384784644301,12.0395532068677,7.09446689665756,20.3399951634605,43.8929584837002,41.9822108442459,6.96496656307637,15.0098382531815,4.94391665779186,17.4467818651414,27.5998963285441,20.4587880255693,2.63881040149373,4.3882004676759,1.70489900213078,18.863600510858,38.5821952789975,18.6846674698673,9.79869794501299,13.5585558789252,7.8187984093842,18.7673845816344,48.9809255863461,20.2535927962166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.639312809217652,23.4935449049968,7.52006865953834,14.0501123391999,0,0.973269740605272,0.283604451492204,0.665188192387692,0.263504357079378,0.261958150995425,8.37879163072847,12.977455497455,0,0,0,0,0,0,1.59009925893364,11.1830497363796,0.694281003215189,1.69592382577203,6.29249154314859,1.6507082516404,1.25396979922086,0.258416759169329,1.77883131343355,0,0,0.760272105718513,1.22031028774085,3.67663080345869,0,0.803697554556718,1.12264686313085,4.16662477788292,3.06633274931766,1.89853131913626,2.01521918323448,0,0,3.48875241714027,2.48485975847659,7.59783069987479,0.264818361626438,0,1.41867352879343,3.36406560085384,0,0.49333509683432,0.933633106199299,4.58016285036939,1.14423332179421,2.57307626996383,4.03323147135999,2.57753575017176,33.088968144014,55.906238511356,14.7954193746283,6.6937664226946,37.7163960377747,41.2925371704611,35.7269799696063,30.3400763760067,9.09266874346736,1.18800285728205,1.7308685049499,10.0117749813183,6.46756327634615,34.6772394745376,31.6549855276069,80.0715293749289,4.38977620880838,22.9865846849265,3.75595147266492,3.62982986112067,49.8703187215036,5.55249210928275,2.7551147150743,116.135254184664,15.4578793857658,14.9431513226465,18.4255687768274,2.70042131586026,1.16924406193438,5.80597680761463,1.10459878370759,2.58633690910099,16.6854508482809,10.5789703139022,46.2900417007631,16.0406508125536,26.1836275767201,8.03052867089211,0.609868530647977,0.397589304964456,1.16193942869518,1.65857688024593,2.01856680700503,0,34.4188971125595,7.71889125831462,99.457143373786,6.50115099244771,41.869009936836,120.90954964072,118.346452434827,129.42292304743,129.705711933295,133.342219784553,144.260536419547,142.247030108973,124.208187424344,150.051391209092,0,7.01208869017229,1.2347220339942,0,0,0,0,0,0,0.686271241194102,9.10927368891592,43.8366837704716,53.7830002402225,5.18495292887766,9.77424915930974,28.0782392025486,7.21656710126366,1.15930404975077,0.117408694235822,0.577465791044295,0,1.90254152234598,0,0,0,0,0,17.8094284574876,1.34385702559088,16.0205859883897,6.98556477082217,29.6446617284241,174.439119020171,0,0,0.207328115540772,0,0,0.190493682876507,0,0,5.13217338068116,2.05654985406647,0,0,47.2071865093969,7.41132117016576,40.3360572015225,0,125.179756048159,19.441963308788,0.531876233169741,0,83.5923966351962,253.909946321668,126.017690674615,1.71573592389777,5.42621605391443,18.9345277459577,20.5213796105053,2.13235169245527,7.91951872933429,0,0,0,0,0,0,3.35474797688216,0,0,11.7272858400739,26.0954929638987,8.77398719875488,0,0,0,0,0.76228387266739,0,0,0,0,0,0,0,14.8456704980159,91.5312053539209,48.2851742185529,1.66376689224646,9.27830741745241,1.41932173530541,3.74852527976682,0.902838299183157,0,6.2083842775503,0.664225598535437,9.21845842708516,11.8161715676593,18.2095076440349,3.77457766191941,0,0.215714200818617,0.320182673410333,71.8412344327635,6.65741758041988,20.2601496530886,0.992431231275107,0.306923946576125,0,0.768834895534206,0.511707249066704,0.321707842287215,0,3.08419387605311,4.6166048581413,18.8892458831761,1.03850885836724,58.6862411222794,0,1.40354529212299,1.10497186723076,0.803701137152247,0.364182336013434,0.655622074797121,6.76799419361118,2.6185214615501,23.5304930753057,17.5367069583913,0,1.13733384070897,2.04112446331819,9.50030030849413,9.25363516141736,2.98041081298238,2.00675909541941,33.8985443149901,12.4661401339309,19.9248531702739,0,0,0.512900250232778,0,0,0.309123034943167,0.27470839445503,0.165018999841176,3.44559322797703,0.650060246036521,0,1.35339005608971,87.1915172868887,48.3536575387308,57.2021775810802,5.15617175367713,16.2418697183936,32.5565716729505,0.0890320356467374,0.330569830721956,0.576570202095319,3.1903178123646,0.910420027699949,3.253918845081,10.7036197922418,5.5762981612848,0.924100740528266,14.3722628185596,7.82939692867565,0.74129687641568,11.3068660526173,26.05108585517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| ||
|short_description=p1@LY6K | |||
}} | }} |
Latest revision as of 21:14, 16 September 2015
Short description: | p1@LY6K |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LY6K_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000292430, ENST00000518841, ENST00000519387, ENST00000561179, NM_001160354, NM_001160355, NM_017527, uc011ljv.1, uc011ljw.1, uc011ljx.1_5end |
EntrezGene: | LY6K |
HGNC: | 24225 |
UniProt: | Q17RY6E5RGJ8G3V116 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.19e-10 | 76 |
skin fibroblast | 2.06e-09 | 23 |
epithelial cell | 2.57e-08 | 253 |
classical monocyte | 1.59e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.59e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.84e-13 | 99 |
multilaminar epithelium | 4.69e-12 | 83 |
musculoskeletal system | 2.04e-11 | 167 |
epithelial vesicle | 4.57e-10 | 78 |
integument | 6.79e-10 | 46 |
integumental system | 6.79e-10 | 46 |
skin of body | 1.11e-09 | 41 |
larynx | 3.64e-09 | 9 |
somite | 7.90e-09 | 71 |
presomitic mesoderm | 7.90e-09 | 71 |
presumptive segmental plate | 7.90e-09 | 71 |
dermomyotome | 7.90e-09 | 71 |
trunk paraxial mesoderm | 7.90e-09 | 71 |
dense mesenchyme tissue | 1.10e-08 | 73 |
paraxial mesoderm | 1.70e-08 | 72 |
presumptive paraxial mesoderm | 1.70e-08 | 72 |
subdivision of skeletal system | 4.88e-08 | 16 |
dermis | 8.07e-07 | 9 |
dermatome | 8.07e-07 | 9 |
future dermis | 8.07e-07 | 9 |