FFCP PHASE1:Hg19::chr2:128433113..128433130,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt=F5H6E6 | |UniProt=F5H6E6 | ||
|association_with_transcript=248bp_to_ENST00000544917_5end | |association_with_transcript=248bp_to_ENST00000544917_5end | ||
|cluster_id=chr2:128433113..128433130,- | |||
|description=CAGE_peak_5_at_LIMS2_5end | |description=CAGE_peak_5_at_LIMS2_5end | ||
|id=chr2:128433113..128433130,- | |id=chr2:128433113..128433130,- | ||
|ontology_enrichment_celltype=CL:0000213!1.14e-07!57;CL:0000215!1.14e-07!57;CL:0002078!2.55e-07!44;CL:0000115!3.81e-07!35 | |ontology_enrichment_celltype=CL:0000213!1.14e-07!57;CL:0000215!1.14e-07!57;CL:0002078!2.55e-07!44;CL:0000115!3.81e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:0000136;5.37e-07;13 | |ontology_enrichment_celltype_v019=CL:0000136;5.37e-07;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.24e-07,15;CL:0000115,5.16e-07,36 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.62e-28!115;UBERON:0000025!2.73e-16!194;UBERON:0004111!1.41e-15!241;UBERON:0000477!1.79e-15!286;UBERON:0000468!1.01e-12!659;UBERON:0001049!8.09e-12!57;UBERON:0005068!8.09e-12!57;UBERON:0006241!8.09e-12!57;UBERON:0007135!8.09e-12!57;UBERON:0000467!1.20e-10!625;UBERON:0000480!1.73e-10!626;UBERON:0002616!5.61e-10!59;UBERON:0000475!5.63e-10!365;UBERON:0000483!2.05e-09!309;UBERON:0000119!2.76e-09!312;UBERON:0000955!4.24e-09!69;UBERON:0006238!4.24e-09!69;UBERON:0003080!5.29e-09!42;UBERON:0003075!6.30e-09!86;UBERON:0007284!6.30e-09!86;UBERON:0002780!1.62e-08!41;UBERON:0001890!1.62e-08!41;UBERON:0006240!1.62e-08!41;UBERON:0000055!1.76e-08!69;UBERON:0000062!2.66e-08!511;UBERON:0001017!3.90e-08!82;UBERON:0003914!4.71e-08!118;UBERON:0004872!5.34e-08!84;UBERON:0001981!8.52e-08!60;UBERON:0007500!8.52e-08!60;UBERON:0004537!8.52e-08!60;UBERON:0006965!8.52e-08!60;UBERON:0002346!1.02e-07!90;UBERON:0005743!1.20e-07!86;UBERON:0000481!2.60e-07!347;UBERON:0000073!5.85e-07!94;UBERON:0001016!5.85e-07!94;UBERON:0002049!5.87e-07!79;UBERON:0007798!5.87e-07!79 | |ontology_enrichment_uberon=UBERON:0007023!8.62e-28!115;UBERON:0000025!2.73e-16!194;UBERON:0004111!1.41e-15!241;UBERON:0000477!1.79e-15!286;UBERON:0000468!1.01e-12!659;UBERON:0001049!8.09e-12!57;UBERON:0005068!8.09e-12!57;UBERON:0006241!8.09e-12!57;UBERON:0007135!8.09e-12!57;UBERON:0000467!1.20e-10!625;UBERON:0000480!1.73e-10!626;UBERON:0002616!5.61e-10!59;UBERON:0000475!5.63e-10!365;UBERON:0000483!2.05e-09!309;UBERON:0000119!2.76e-09!312;UBERON:0000955!4.24e-09!69;UBERON:0006238!4.24e-09!69;UBERON:0003080!5.29e-09!42;UBERON:0003075!6.30e-09!86;UBERON:0007284!6.30e-09!86;UBERON:0002780!1.62e-08!41;UBERON:0001890!1.62e-08!41;UBERON:0006240!1.62e-08!41;UBERON:0000055!1.76e-08!69;UBERON:0000062!2.66e-08!511;UBERON:0001017!3.90e-08!82;UBERON:0003914!4.71e-08!118;UBERON:0004872!5.34e-08!84;UBERON:0001981!8.52e-08!60;UBERON:0007500!8.52e-08!60;UBERON:0004537!8.52e-08!60;UBERON:0006965!8.52e-08!60;UBERON:0002346!1.02e-07!90;UBERON:0005743!1.20e-07!86;UBERON:0000481!2.60e-07!347;UBERON:0000073!5.85e-07!94;UBERON:0001016!5.85e-07!94;UBERON:0002049!5.87e-07!79;UBERON:0007798!5.87e-07!79 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;7.88e-08;6!UBERON:0002358;7.88e-08;6!UBERON:0003684;7.88e-08;6!UBERON:0001178;7.88e-08;6!UBERON:0007023;1.18e-07;114 | |ontology_enrichment_uberon_v019=UBERON:0003688;7.88e-08;6!UBERON:0002358;7.88e-08;6!UBERON:0003684;7.88e-08;6!UBERON:0001178;7.88e-08;6!UBERON:0007023;1.18e-07;114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.73e-22,114;UBERON:0002417,1.02e-08,60;UBERON:0000916,1.02e-08,60;UBERON:0000025,1.26e-08,192;UBERON:0003887,7.38e-08,12;UBERON:0003688,1.01e-07,6;UBERON:0002358,1.01e-07,6;UBERON:0003684,1.01e-07,6;UBERON:0001178,1.01e-07,6;UBERON:0009569,1.13e-07,112;UBERON:0004111,1.23e-07,240;UBERON:0004457,3.36e-07,12;UBERON:0000042,3.36e-07,12;UBERON:0004876,5.98e-07,11;UBERON:0003103,6.28e-07,68;UBERON:0000080,8.67e-07,9;UBERON:0002120,8.67e-07,9;UBERON:0004875,8.67e-07,9;UBERON:0005721,8.67e-07,9;UBERON:0005754,8.67e-07,9;UBERON:0007297,8.67e-07,9 | |||
|phase1_expression=3.63356758541113,2.5692062866918,5.3562673556469,2.00146596706261,3.5756887554183,4.36169262050184,2.53299878168311,0.631719873426831,0,0.491467873003018,2.79120467188971,0.436882744260345,1.05506791291381,0,0,0,0,0,0.487932798790507,0,0,0.313454721478088,0.286235987131057,0.273748850145768,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,1.66198622559563,2.00544447470142,1.30206522429511,0,0,0,0,0,0.242584061187816,0.232429036905685,0,0,0,0,0,1.03423704220986,0,0,0,0,0,0.612167784741805,0,0.639337125799041,0,0,0,0.870627715885752,0,0.622822248995575,0,0,0,1.81619850790011,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639312809217652,0.361439152384566,0.50133791063589,0.724232594804119,0.795285947051099,0.973269740605272,0,0,0,2.75056058545197,0,0,0,0,0,0,0,0,1.98762407366705,0.860234595106124,0.694281003215189,1.69592382577203,2.93649605346934,1.37559020970034,1.04497483268405,1.8089173141853,4.98072767761394,5.02080919147005,1.20848795132744,0.760272105718513,0.976248230192678,1.83831540172934,1.62028389576352,0.803697554556718,2.91888184414021,1.46394924628319,0,0,0.183201743930407,0,0,0,4.96971951695318,0.12663051166458,0.926864265692532,0.573673241497627,0.354668382198357,5.60677600142307,2.1349799145941,2.22000793575444,0.311211035399766,0,0.490385709340376,0,0,0,0,0,0,0,0,0,0,0,0,0,0.989067717114227,1.82032272387605,0,0,0,0,2.19488810440419,1.22595118319608,0.600952235626387,0,0.538168907066586,2.13557388818567,0.847727604638247,1.20036438433761,0.618315175430633,1.8034837803194,0.744467425326359,0.843881661206331,1.75386609290158,1.00973509697646,1.38074847963449,1.2931684545505,0.355009592516614,0.503760491138201,1.3564847384839,0,0,0,0.243947412259191,0,0,0,0,0,1.56449532329816,1.92972281457866,1.38134921352481,0,0,0.473227200159376,0.168584690078102,0,0.220587945464788,0.217879444092406,0,0.269662616320329,0,0.38474715694639,5.16708818237254,2.80483547606892,2.057870056657,2.94017422771084,0,1.96565443335525,2.36315962672562,0,0,0,0,0,0,0,0,0,0,0,1.40890433082986,0.433099343283221,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.07333828582095,0.517086863031111,0,0,1.59562869950922,1.04007436911366,0,0,0,0.714889968290738,0,0.823240336780769,0,0.355391948742546,0,0.301439377059586,1.74306691720059,1.19967589418468,0,0,0,1.67737398844108,1.14861935834114,0,0.868687840005475,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,4.15941723061614,1.60586089917446,1.41932173530541,1.52283839490527,0.601892199455438,0,1.03473071292505,0,0.553107505625109,0.347534457872331,0,0.686286847621712,0,0,0.106727557803444,0,0,0.30239029332968,4.21783273291921,5.52463103837025,3.64858122762996,5.12556597022804,3.58195074346692,4.82561763430822,8.90508398669946,0,0.355123450626254,0,0,0.116210378459959,0,0.200506470303285,0,0.803701137152247,0.182091168006717,0.524497659837696,0,0,1.56869953835371,1.46139224653261,0,3.4120015221269,3.06168669497728,1.51141141271498,18.5072703228347,1.08378575017541,0.501689773854853,0,0,0,0,0,0,0,0,1.44257416306811,0.457847324091717,0.495056999523528,0,0,0,0.193341436584244,0,0,0.137836572484531,0.107420244868274,0,0,0.890320356467374,0,0,0,0,1.85938219718914,0.62962469366128,0,0,1.59691809095107,0.869932992075073,0.18532421910392,0,0.372158369359667,0.632758849437452,0.571890581771475,0.511795582622668,0,0,0.78494864019923,0.899362287916574,0,0,0.202182481573316,0,0.421258456238981,0.975267478179181,0,1.05650146756755,0.136499911407986,0.424216295861138,1.13008116620243,1.10273068709225,0,0.438450885253763,0,0,1.42037263873893,0.92947049429925,0.281695602532241,0.143411352204052,0.491245205065606,1.78335525740625,0,0.422215270595328,1.64647446479951,0,0.349934720244983,0,0,0,1.50630081242847,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19762268907841,0.36408156524854,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,0.211125408127993,5.97743964753209,2.21027132424918,0,0.102268682502155,0,2.79935628895627,0,0,0,1.57829449019094,0,10.0023291130173,2.90799823828566,1.02044907978036,0,0,0,2.89999830173917,0,0,0,0,0,0.173624994933292,0,0.60298219312704,3.05163472634166,0.331737779793674,0.886642856860642,1.31631238292384,0.10893846351899,0,4.07836370070124,0,0,0,0,0.31900115973192,0.641183153813036,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,1.59223616106011,5.49927130440263,0,0,0,1.34802265961354,4.01288823649394,0.702793337176017,0,0,0.242780379534093,0.394584402849391,1.20990716048664,0.30607276163049,4.67580689250811,0,0,0,0,0,0,0,0,0.173559738335131,0.293977192243133,0,1.22308667769421,0.343972064943233,0,0,0,0.969890164884194,0,1.80784592624426,0,0,2.089256266544,0,0,2.56143593687223,0.19980960958213,0,0.80175617316141,0,0,0,0,3.53350935791397,3.451893928307,0,0,1.20084057741958,0.95833765224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| ||
|short_description=p5@LIMS2 | |short_description=p5@LIMS2 | ||
}} | }} |
Latest revision as of 21:12, 16 September 2015
Short description: | p5@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LIMS2_5end |
Coexpression cluster: | NA |
Association with transcript: | 248bp_to_ENST00000544917_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | F5H6E6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.24e-07 | 15 |
endothelial cell | 5.16e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.73e-22 | 114 |
abdominal segment of trunk | 1.02e-08 | 60 |
abdomen | 1.02e-08 | 60 |
tube | 1.26e-08 | 192 |
intraembryonic coelom | 7.38e-08 | 12 |
omentum | 1.01e-07 | 6 |
peritoneum | 1.01e-07 | 6 |
abdominal cavity | 1.01e-07 | 6 |
visceral peritoneum | 1.01e-07 | 6 |
subdivision of trunk | 1.13e-07 | 112 |
anatomical conduit | 1.23e-07 | 240 |
cavity lining | 3.36e-07 | 12 |
serous membrane | 3.36e-07 | 12 |
urogenital ridge | 5.98e-07 | 11 |
compound organ | 6.28e-07 | 68 |
mesonephros | 8.67e-07 | 9 |
pronephros | 8.67e-07 | 9 |
nephrogenic cord | 8.67e-07 | 9 |
pronephric mesoderm | 8.67e-07 | 9 |
rostral part of nephrogenic cord | 8.67e-07 | 9 |
presumptive pronephric mesoderm | 8.67e-07 | 9 |