FFCP PHASE1:Hg19::chr6:167536537..167536608,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:167536537..167536608,+ to FFCP PHASE1:Hg19::chr6:167536537..167536608,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1235 | |EntrezGene=1235 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1607 | |HGNC=1607 | ||
|TSSclassifier=strong | |||
|UniProt=P51684 | |UniProt=P51684 | ||
|association_with_transcript=280bp_to_ENST00000341935_5end | |||
|cluster_id=chr6:167536537..167536608,+ | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_4_at_CCR6_5end | |||
|id=chr6:167536537..167536608,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.16e-34!140;CL:0002087!2.55e-31!119;CL:0000037!8.80e-28!172;CL:0000566!8.80e-28!172;CL:0002031!4.15e-27!124;CL:0000542!4.30e-27!53;CL:0000051!4.30e-27!53;CL:0000838!2.96e-26!52;CL:0000988!7.55e-25!182;CL:0002032!9.35e-25!165;CL:0000837!9.35e-25!165;CL:0000791!6.33e-16!18;CL:0000789!6.33e-16!18;CL:0002420!6.33e-16!18;CL:0002419!6.33e-16!18;CL:0000790!6.33e-16!18;CL:0000945!2.32e-15!24;CL:0000826!2.32e-15!24;CL:0000236!5.19e-14!14;CL:0000451!8.95e-13!10;CL:0000990!7.71e-11!8;CL:0000084!4.85e-10!25;CL:0000827!4.85e-10!25;CL:0000625!6.43e-09!11;CL:0000840!2.38e-08!5;CL:0001029!2.38e-08!5;CL:0002009!8.82e-08!65;CL:0000624!1.20e-07!6;CL:0000453!7.42e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000236;8.91e-22;13!CL:0000945;1.74e-19;24!CL:0000451;1.45e-14;10!CL:0000542;9.74e-13;53!CL:0000990;2.45e-11;8!CL:0000840;9.01e-10;5!CL:0000791;1.90e-09;18!CL:0000789;1.90e-09;18!CL:0002419;1.90e-09;18!CL:0000453;1.83e-07;5!CL:0000226;8.36e-07;3!CL:0000842;8.36e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.01e-22,52;CL:0000542,1.11e-21,53;CL:0000051,1.11e-21,53;CL:0000236,5.35e-20,14;CL:0000945,1.81e-19,24;CL:0000826,1.81e-19,24;CL:0000738,1.50e-16,136;CL:0000037,8.76e-15,168;CL:0000451,2.29e-14,10;CL:0002087,1.56e-13,115;CL:0000988,1.98e-13,177;CL:0002031,6.71e-12,120;CL:0002032,1.34e-11,161;CL:0000837,1.34e-11,161;CL:0000990,3.02e-11,8;CL:0000840,8.80e-10,5;CL:0001029,8.80e-10,5;CL:0000791,2.12e-09,18;CL:0000789,2.12e-09,18;CL:0002420,2.12e-09,18;CL:0002419,2.12e-09,18;CL:0000790,2.12e-09,18;CL:0000453,2.33e-07,5;CL:0000226,6.52e-07,3;CL:0000842,6.52e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;9.74e-13;53!CL:0000790;1.90e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.53e-14!102;UBERON:0003061!4.53e-14!102;UBERON:0002193!2.07e-13!112;UBERON:0000178!2.33e-11!15;UBERON:0000179!2.33e-11!15;UBERON:0000463!2.33e-11!15;UBERON:0007023!2.04e-09!115;UBERON:0002405!1.85e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.75e-18;15!UBERON:0000179;1.75e-18;15!UBERON:0000463;1.75e-18;15!UBERON:0002390;2.96e-12;32!UBERON:0002193;9.31e-09;42!UBERON:0004177;4.81e-07;5!UBERON:0005057;4.81e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.32e-18,15;UBERON:0000179,1.32e-18,15;UBERON:0000463,1.32e-18,15;UBERON:0004177,2.91e-10,7;UBERON:0005057,2.91e-10,7;UBERON:0002193,4.47e-08,108;UBERON:0002370,4.61e-08,4;UBERON:0005058,4.61e-08,4;UBERON:0009113,4.61e-08,4;UBERON:0003295,4.61e-08,4;UBERON:0005562,4.61e-08,4;UBERON:0002390,9.58e-08,98;UBERON:0003061,9.58e-08,98 | |||
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| ||
|short_description=p4@CCR6 | |||
}} | }} |
Latest revision as of 21:09, 16 September 2015
Short description: | p4@CCR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CCR6_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 280bp_to_ENST00000341935_5end |
EntrezGene: | CCR6 |
HGNC: | 1607 |
UniProt: | P51684 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.01e-22 | 52 |
lymphocyte | 1.11e-21 | 53 |
common lymphoid progenitor | 1.11e-21 | 53 |
B cell | 5.35e-20 | 14 |
lymphocyte of B lineage | 1.81e-19 | 24 |
pro-B cell | 1.81e-19 | 24 |
leukocyte | 1.50e-16 | 136 |
hematopoietic stem cell | 8.76e-15 | 168 |
dendritic cell | 2.29e-14 | 10 |
nongranular leukocyte | 1.56e-13 | 115 |
hematopoietic cell | 1.98e-13 | 177 |
hematopoietic lineage restricted progenitor cell | 6.71e-12 | 120 |
hematopoietic oligopotent progenitor cell | 1.34e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.34e-11 | 161 |
conventional dendritic cell | 3.02e-11 | 8 |
immature conventional dendritic cell | 8.80e-10 | 5 |
common dendritic progenitor | 8.80e-10 | 5 |
mature alpha-beta T cell | 2.12e-09 | 18 |
alpha-beta T cell | 2.12e-09 | 18 |
immature T cell | 2.12e-09 | 18 |
mature T cell | 2.12e-09 | 18 |
immature alpha-beta T cell | 2.12e-09 | 18 |
Langerhans cell | 2.33e-07 | 5 |
single nucleate cell | 6.52e-07 | 3 |
mononuclear cell | 6.52e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.32e-18 | 15 |
haemolymphatic fluid | 1.32e-18 | 15 |
organism substance | 1.32e-18 | 15 |
hemopoietic organ | 2.91e-10 | 7 |
immune organ | 2.91e-10 | 7 |
hemolymphoid system | 4.47e-08 | 108 |
thymus | 4.61e-08 | 4 |
hemolymphoid system gland | 4.61e-08 | 4 |
thymic region | 4.61e-08 | 4 |
pharyngeal gland | 4.61e-08 | 4 |
thymus primordium | 4.61e-08 | 4 |
hematopoietic system | 9.58e-08 | 98 |
blood island | 9.58e-08 | 98 |