FFCP PHASE1:Hg19::chr2:29337114..29337117,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79745 | |EntrezGene=79745 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26108 | |HGNC=26108 | ||
|TSSclassifier=strong | |||
|UniProt=A8K6D0,Q8N3C7 | |UniProt=A8K6D0,Q8N3C7 | ||
|association_with_transcript=252bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end | |association_with_transcript=252bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end | ||
|cluster_id=chr2:29337114..29337117,+ | |||
|coexpression_cluster_id=C92 | |||
|description=CAGE_peak_21_at_CLIP4_5end | |description=CAGE_peak_21_at_CLIP4_5end | ||
|id=chr2:29337114..29337117,+ | |id=chr2:29337114..29337117,+ | ||
|ontology_enrichment_celltype=CL:0002057!5.24e-36!42;CL:0000860!3.08e-35!45;CL:0000766!1.35e-31!76;CL:0002194!1.72e-31!63;CL:0000576!1.72e-31!63;CL:0000040!1.72e-31!63;CL:0000559!1.72e-31!63;CL:0000839!4.07e-31!70;CL:0000557!1.59e-30!71;CL:0002009!3.31e-30!65;CL:0000763!7.65e-18!112;CL:0000049!7.65e-18!112;CL:0002393!2.11e-15!9;CL:0002397!2.11e-15!9;CL:0002031!5.00e-13!124;CL:0000738!3.68e-12!140;CL:0002087!4.77e-12!119;CL:0002032!8.04e-09!165;CL:0000837!8.04e-09!165;CL:0000875!3.20e-08!3;CL:0002396!3.20e-08!3;CL:0000037!4.44e-08!172;CL:0000566!4.44e-08!172;CL:0000988!3.93e-07!182;CL:0000063!5.70e-07!578 | |ontology_enrichment_celltype=CL:0002057!5.24e-36!42;CL:0000860!3.08e-35!45;CL:0000766!1.35e-31!76;CL:0002194!1.72e-31!63;CL:0000576!1.72e-31!63;CL:0000040!1.72e-31!63;CL:0000559!1.72e-31!63;CL:0000839!4.07e-31!70;CL:0000557!1.59e-30!71;CL:0002009!3.31e-30!65;CL:0000763!7.65e-18!112;CL:0000049!7.65e-18!112;CL:0002393!2.11e-15!9;CL:0002397!2.11e-15!9;CL:0002031!5.00e-13!124;CL:0000738!3.68e-12!140;CL:0002087!4.77e-12!119;CL:0002032!8.04e-09!165;CL:0000837!8.04e-09!165;CL:0000875!3.20e-08!3;CL:0002396!3.20e-08!3;CL:0000037!4.44e-08!172;CL:0000566!4.44e-08!172;CL:0000988!3.93e-07!182;CL:0000063!5.70e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0000875;5.00e-67;3!CL:0002396;5.00e-67;3!CL:0002393;1.41e-15;6!CL:0002397;1.41e-15;6!CL:0000766;2.07e-10;69!CL:0000576;3.59e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000875,5.01e-67,3;CL:0002396,5.01e-67,3;CL:0002393,3.51e-61,9;CL:0002397,3.51e-61,9;CL:0000473,2.10e-22,48;CL:0000234,2.10e-22,48;CL:0000860,5.65e-19,42;CL:0002057,5.65e-19,42;CL:0002194,6.39e-18,59;CL:0000576,6.39e-18,59;CL:0000040,6.39e-18,59;CL:0000559,6.39e-18,59;CL:0002009,2.42e-17,61;CL:0000839,4.82e-16,66;CL:0000557,8.31e-16,67;CL:0000766,1.02e-14,72;CL:0000763,8.20e-10,108;CL:0000049,8.20e-10,108;CL:0002087,3.29e-09,115;CL:0002031,8.06e-09,120;CL:0000738,9.19e-08,136 | |||
|ontology_enrichment_development_v019=CL:0002057;6.17e-13;42 | |||
|ontology_enrichment_disease=DOID:1749!3.77e-13!14;DOID:305!3.29e-10!106;DOID:0050687!5.42e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:4929;2.74e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,3.62e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0002371!7.02e-26!80;UBERON:0001474!2.50e-23!86;UBERON:0004765!1.48e-19!101;UBERON:0001434!1.48e-19!101;UBERON:0002390!5.08e-18!102;UBERON:0003061!5.08e-18!102;UBERON:0002405!8.14e-17!115;UBERON:0002193!1.70e-15!112;UBERON:0002204!6.72e-08!167;UBERON:0000062!3.22e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;3.67e-23;1!UBERON:0003703;3.67e-23;1!UBERON:0001174;3.67e-23;1!UBERON:0004914;3.67e-23;1!UBERON:0002394;8.02e-23;4!UBERON:0003928;8.02e-23;4!UBERON:0002294;1.69e-13;7!UBERON:0001173;1.69e-13;7!UBERON:0000058;9.65e-10;10!UBERON:0002114;1.26e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,6.40e-23,1;UBERON:0003703,6.40e-23,1;UBERON:0001174,6.40e-23,1;UBERON:0004914,6.40e-23,1;UBERON:0002394,1.63e-15,6;UBERON:0003928,1.63e-15,6;UBERON:0002371,5.98e-14,76;UBERON:0001474,6.20e-13,82;UBERON:0004765,8.72e-12,90;UBERON:0002405,2.10e-11,93;UBERON:0002390,8.04e-11,98;UBERON:0003061,8.04e-11,98;UBERON:0002294,1.12e-10,9;UBERON:0001173,1.12e-10,9;UBERON:0004912,1.12e-10,9;UBERON:0001434,1.33e-10,100;UBERON:0002193,8.20e-10,108;UBERON:0002114,1.51e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.464448369948228,0,0,0.369754010166788,0,0,0,0,0.200544447470142,0.217010870715852,0,0.32389366601898,0.257575567634187,0.290796477559129,0.377875943688809,0.242584061187816,0,0,0.619412741790207,0,0.512321413058201,0.47296445977717,0.689491361473237,0,0,0.564727018627814,0.272906150057846,0.224723484445085,0,0.320929027076094,1.27867425159808,0.659702600373432,0.797854630486527,0.426224750532694,0.870627715885752,0,0,0.251248665256743,0,0.868755378820466,0,0,0.632924774881769,1.26753171787165,0.850417199860174,1.04829322754188,0.112328631146495,0.150176892841506,0,4.56020389985998,2.58591680358817,2.92262646023414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0.283550194484773,0.0895585227028483,0,0,0,0,0.207328115540772,0,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0.613612095012929,0,0,1.25815691606258,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.783939179315021,0.34823682632161,0.17472666824203,0,0,0.0730893170861856,0,0,0,0,0,0,0,0.586654148204409,0.561111741760736,0,0.799238438328521,0,0,0,0,0.621262677827163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0.690860683462397,0.303859956177382,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0.687034029507179,0.353909170043221,0,0.462102664601353,0,0,0,0,0,0,0,0,1.03499260351932,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0.236387681767936,0,0,0.157115589916002,0,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0.236664001461131,0.0852134047591577,0,0.22910686854405,0.93061915699296,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0.352894871715692,0.401206833445841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0.325613074443898,0.320182037633146,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.464448369948228,0,0,0.369754010166788,0,0,0,0,0.200544447470142,0.217010870715852,0,0.32389366601898,0.257575567634187,0.290796477559129,0.377875943688809,0.242584061187816,0,0,0.619412741790207,0,0.512321413058201,0.47296445977717,0.689491361473237,0,0,0.564727018627814,0.272906150057846,0.224723484445085,0,0.320929027076094,1.27867425159808,0.659702600373432,0.797854630486527,0.426224750532694,0.870627715885752,0,0,0.251248665256743,0,0.868755378820466,0,0,0.632924774881769,1.26753171787165,0.850417199860174,1.04829322754188,0.112328631146495,0.150176892841506,0,4.56020389985998,2.58591680358817,2.92262646023414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0.283550194484773,0.0895585227028483,0,0,0,0,0.207328115540772,0,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0.613612095012929,0,0,1.25815691606258,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.783939179315021,0.34823682632161,0.17472666824203,0,0,0.0730893170861856,0,0,0,0,0,0,0,0.586654148204409,0.561111741760736,0,0.799238438328521,0,0,0,0,0.621262677827163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0.690860683462397,0.303859956177382,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0.687034029507179,0.353909170043221,0,0.462102664601353,0,0,0,0,0,0,0,0,1.03499260351932,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0.236387681767936,0,0,0.157115589916002,0,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0.236664001461131,0.0852134047591577,0,0.22910686854405,0.93061915699296,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0.352894871715692,0.401206833445841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0.325613074443898,0.320182037633146,0,0,0,0,0,0,0,0 | ||
|short_description=p21@CLIP4 | |short_description=p21@CLIP4 | ||
}} | }} |
Latest revision as of 20:33, 16 September 2015
Short description: | p21@CLIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_CLIP4_5end |
Coexpression cluster: | C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole |
Association with transcript: | 252bp_to_ENST00000402240, ENST00000404424, uc010ezm.1_5end |
EntrezGene: | CLIP4 |
HGNC: | 26108 |
UniProt: | A8K6D0Q8N3C7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
non-classical monocyte | 5.01e-67 | 3 |
CD14-low, CD16-positive monocyte | 5.01e-67 | 3 |
intermediate monocyte | 3.51e-61 | 9 |
CD14-positive, CD16-positive monocyte | 3.51e-61 | 9 |
defensive cell | 2.10e-22 | 48 |
phagocyte | 2.10e-22 | 48 |
classical monocyte | 5.65e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.65e-19 | 42 |
monopoietic cell | 6.39e-18 | 59 |
monocyte | 6.39e-18 | 59 |
monoblast | 6.39e-18 | 59 |
promonocyte | 6.39e-18 | 59 |
macrophage dendritic cell progenitor | 2.42e-17 | 61 |
myeloid lineage restricted progenitor cell | 4.82e-16 | 66 |
granulocyte monocyte progenitor cell | 8.31e-16 | 67 |
myeloid leukocyte | 1.02e-14 | 72 |
myeloid cell | 8.20e-10 | 108 |
common myeloid progenitor | 8.20e-10 | 108 |
nongranular leukocyte | 3.29e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 8.06e-09 | 120 |
leukocyte | 9.19e-08 | 136 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 6.40e-23 | 1 |
extrahepatic bile duct | 6.40e-23 | 1 |
common bile duct | 6.40e-23 | 1 |
duodenal papilla | 6.40e-23 | 1 |
bile duct | 1.63e-15 | 6 |
digestive system duct | 1.63e-15 | 6 |
bone marrow | 5.98e-14 | 76 |
bone element | 6.20e-13 | 82 |
skeletal element | 8.72e-12 | 90 |
immune system | 2.10e-11 | 93 |
hematopoietic system | 8.04e-11 | 98 |
blood island | 8.04e-11 | 98 |
biliary system | 1.12e-10 | 9 |
biliary tree | 1.12e-10 | 9 |
biliary bud | 1.12e-10 | 9 |
skeletal system | 1.33e-10 | 100 |
hemolymphoid system | 8.20e-10 | 108 |
duodenum | 1.51e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 3.62e-12 | 2 |