FFCP PHASE1:Hg19::chr20:48599506..48599526,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6615 | |EntrezGene=6615 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11128 | |HGNC=11128 | ||
|TSSclassifier=strong | |||
|UniProt=O95863 | |UniProt=O95863 | ||
|association_with_transcript=0bp_to_NM_005985,uc002xuz.2_5end | |association_with_transcript=0bp_to_NM_005985,uc002xuz.2_5end | ||
|cluster_id=chr20:48599506..48599526,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_SNAI1_5end | |description=CAGE_peak_1_at_SNAI1_5end | ||
|id=chr20:48599506..48599526,+ | |id=chr20:48599506..48599526,+ | ||
|ontology_enrichment_celltype=CL:0002057!6.44e-15!42;CL:0000860!6.59e-15!45;CL:0000048!2.37e-08!430;CL:0000548!1.40e-07!679;CL:0000004!1.40e-07!679;CL:0000255!1.40e-07!679;CL:0000012!1.44e-07!682;CL:0000034!1.49e-07!444;CL:0000723!4.98e-07!436;CL:0000055!5.27e-07!180 | |ontology_enrichment_celltype=CL:0002057!6.44e-15!42;CL:0000860!6.59e-15!45;CL:0000048!2.37e-08!430;CL:0000548!1.40e-07!679;CL:0000004!1.40e-07!679;CL:0000255!1.40e-07!679;CL:0000012!1.44e-07!682;CL:0000034!1.49e-07!444;CL:0000723!4.98e-07!436;CL:0000055!5.27e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.67e-18;33!CL:0002057;1.67e-18;33!CL:0000473;5.81e-10;39!CL:0000234;5.81e-10;39!CL:0000576;3.50e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.73e-15,42;CL:0002057,4.73e-15,42;CL:0000473,5.54e-10,48;CL:0000234,5.54e-10,48;CL:0000048,1.45e-08,427;CL:0000034,9.02e-08,441;CL:0000723,3.08e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;1.31e-11;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!1.06e-13!84;UBERON:0003914!2.11e-13!118;UBERON:0001981!3.82e-12!60;UBERON:0007500!3.82e-12!60;UBERON:0004537!3.82e-12!60;UBERON:0006965!3.82e-12!60;UBERON:0000055!6.66e-12!69;UBERON:0002049!2.08e-11!79;UBERON:0007798!2.08e-11!79;UBERON:0003081!1.17e-10!216;UBERON:0004535!4.73e-10!110;UBERON:0001009!5.83e-10!113;UBERON:0001637!7.66e-10!42;UBERON:0003509!7.66e-10!42;UBERON:0004572!7.66e-10!42;UBERON:0000926!1.17e-08!448;UBERON:0004120!1.17e-08!448;UBERON:0006603!1.17e-08!448;UBERON:0004573!1.37e-08!33;UBERON:0004571!1.37e-08!33;UBERON:0000490!8.35e-07!138 | |ontology_enrichment_uberon=UBERON:0004872!1.06e-13!84;UBERON:0003914!2.11e-13!118;UBERON:0001981!3.82e-12!60;UBERON:0007500!3.82e-12!60;UBERON:0004537!3.82e-12!60;UBERON:0006965!3.82e-12!60;UBERON:0000055!6.66e-12!69;UBERON:0002049!2.08e-11!79;UBERON:0007798!2.08e-11!79;UBERON:0003081!1.17e-10!216;UBERON:0004535!4.73e-10!110;UBERON:0001009!5.83e-10!113;UBERON:0001637!7.66e-10!42;UBERON:0003509!7.66e-10!42;UBERON:0004572!7.66e-10!42;UBERON:0000926!1.17e-08!448;UBERON:0004120!1.17e-08!448;UBERON:0006603!1.17e-08!448;UBERON:0004573!1.37e-08!33;UBERON:0004571!1.37e-08!33;UBERON:0000490!8.35e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.71e-08;33!UBERON:0004571;5.71e-08;33!UBERON:0001637;6.17e-08;42!UBERON:0003509;6.17e-08;42!UBERON:0004572;6.17e-08;42!UBERON:0007500;8.06e-07;56!UBERON:0001981;8.06e-07;56!UBERON:0004537;8.06e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,1.16e-13,117;UBERON:0004872,2.91e-13,83;UBERON:0007500,8.82e-12,59;UBERON:0001981,8.82e-12,59;UBERON:0004537,8.82e-12,59;UBERON:0006965,8.82e-12,59;UBERON:0003081,9.98e-12,203;UBERON:0000055,1.78e-11,68;UBERON:0002049,4.43e-11,78;UBERON:0007798,4.43e-11,78;UBERON:0000926,2.45e-10,315;UBERON:0004120,2.45e-10,315;UBERON:0006603,2.45e-10,315;UBERON:0004535,5.45e-10,109;UBERON:0001637,6.71e-10,42;UBERON:0003509,6.71e-10,42;UBERON:0004572,6.71e-10,42;UBERON:0001009,6.73e-10,112;UBERON:0004573,1.23e-08,33;UBERON:0004571,1.23e-08,33;UBERON:0002204,9.32e-07,167 | |||
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| ||
|short_description=p1@SNAI1 | |short_description=p1@SNAI1 | ||
}} | }} |
Latest revision as of 20:24, 16 September 2015
Short description: | p1@SNAI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNAI1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_NM_005985, uc002xuz.2_5end |
EntrezGene: | SNAI1 |
HGNC: | 11128 |
UniProt: | O95863 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.73e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.73e-15 | 42 |
defensive cell | 5.54e-10 | 48 |
phagocyte | 5.54e-10 | 48 |
multi fate stem cell | 1.45e-08 | 427 |
stem cell | 9.02e-08 | 441 |
somatic stem cell | 3.08e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 1.16e-13 | 117 |
splanchnic layer of lateral plate mesoderm | 2.91e-13 | 83 |
epithelial tube open at both ends | 8.82e-12 | 59 |
blood vessel | 8.82e-12 | 59 |
blood vasculature | 8.82e-12 | 59 |
vascular cord | 8.82e-12 | 59 |
lateral plate mesoderm | 9.98e-12 | 203 |
vessel | 1.78e-11 | 68 |
vasculature | 4.43e-11 | 78 |
vascular system | 4.43e-11 | 78 |
mesoderm | 2.45e-10 | 315 |
mesoderm-derived structure | 2.45e-10 | 315 |
presumptive mesoderm | 2.45e-10 | 315 |
cardiovascular system | 5.45e-10 | 109 |
artery | 6.71e-10 | 42 |
arterial blood vessel | 6.71e-10 | 42 |
arterial system | 6.71e-10 | 42 |
circulatory system | 6.73e-10 | 112 |
systemic artery | 1.23e-08 | 33 |
systemic arterial system | 1.23e-08 | 33 |
musculoskeletal system | 9.32e-07 | 167 |