FFCP PHASE1:Hg19::chr12:120805876..120805897,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4440 | |EntrezGene=4440 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7330 | |HGNC=7330 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000546985_5end | |association_with_transcript=-4bp_to_ENST00000546985_5end | ||
|cluster_id=chr12:120805876..120805897,- | |||
|coexpression_cluster_id=C85 | |||
|description=CAGE_peak_6_at_MSI1_5end | |description=CAGE_peak_6_at_MSI1_5end | ||
|id=chr12:120805876..120805897,- | |id=chr12:120805876..120805897,- | ||
|ontology_enrichment_celltype=CL:0000133!1.15e-12!59;CL:0002322!1.20e-12!5;CL:0000221!1.15e-09!71;CL:0002319!2.20e-09!25;CL:0002605!1.21e-08!3;CL:0000047!3.27e-08!8;CL:0000064!3.85e-08!3;CL:0005012!3.85e-08!3;CL:0000067!3.85e-08!3;CL:0002304!3.85e-08!3;CL:0000540!2.55e-07!6;CL:0000031!2.55e-07!6;CL:0000404!2.55e-07!6;CL:0000333!8.13e-07!41 | |ontology_enrichment_celltype=CL:0000133!1.15e-12!59;CL:0002322!1.20e-12!5;CL:0000221!1.15e-09!71;CL:0002319!2.20e-09!25;CL:0002605!1.21e-08!3;CL:0000047!3.27e-08!8;CL:0000064!3.85e-08!3;CL:0005012!3.85e-08!3;CL:0000067!3.85e-08!3;CL:0002304!3.85e-08!3;CL:0000540!2.55e-07!6;CL:0000031!2.55e-07!6;CL:0000404!2.55e-07!6;CL:0000333!8.13e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000540;1.98e-20;6!CL:0000404;1.98e-20;6!CL:0002319;2.51e-17;25!CL:0000047;6.14e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,7.78e-27,8;CL:0000540,1.42e-20,6;CL:0000031,1.42e-20,6;CL:0000404,1.42e-20,6;CL:0002319,1.82e-17,25;CL:0000133,1.14e-16,59;CL:0000221,1.40e-13,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.98e-20;6!CL:0000133;1.08e-10;59 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001905;2.38e-27;2!UBERON:0002757;2.38e-27;2!UBERON:0010134;2.38e-27;2!UBERON:0005408;2.38e-27;2!UBERON:0001899;2.38e-27;2!UBERON:0003296;3.37e-14;4!UBERON:0010133;3.37e-14;4!UBERON:0002784;3.37e-14;4!UBERON:0001894;1.65e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,7.96e-27,2;UBERON:0002757,7.96e-27,2;UBERON:0010134,7.96e-27,2;UBERON:0005408,7.96e-27,2;UBERON:0001899,7.96e-27,2;UBERON:0003296,6.13e-14,4;UBERON:0010133,6.13e-14,4;UBERON:0002784,6.13e-14,4;UBERON:0001016,9.81e-11,89;UBERON:0001017,1.93e-09,81;UBERON:0001894,2.32e-08,7;UBERON:0006222,2.32e-08,7;UBERON:0004121,6.11e-08,171;UBERON:0000924,6.11e-08,171;UBERON:0006601,6.11e-08,171 | |||
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| ||
|short_description=p6@MSI1 | |short_description=p6@MSI1 | ||
}} | }} |
Latest revision as of 20:10, 16 September 2015
Short description: | p6@MSI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_MSI1_5end |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | -4bp_to_ENST00000546985_5end |
EntrezGene: | MSI1 |
HGNC: | 7330 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 7.78e-27 | 8 |
neuron | 1.42e-20 | 6 |
neuroblast | 1.42e-20 | 6 |
electrically signaling cell | 1.42e-20 | 6 |
neural cell | 1.82e-17 | 25 |
neurectodermal cell | 1.14e-16 | 59 |
ectodermal cell | 1.40e-13 | 72 |
Ontology term | p-value | n |
---|---|---|
pineal body | 7.96e-27 | 2 |
regional part of epithalamus | 7.96e-27 | 2 |
secretory circumventricular organ | 7.96e-27 | 2 |
circumventricular organ | 7.96e-27 | 2 |
epithalamus | 7.96e-27 | 2 |
gland of diencephalon | 6.13e-14 | 4 |
neuroendocrine gland | 6.13e-14 | 4 |
regional part of diencephalon | 6.13e-14 | 4 |
nervous system | 9.81e-11 | 89 |
central nervous system | 1.93e-09 | 81 |
diencephalon | 2.32e-08 | 7 |
future diencephalon | 2.32e-08 | 7 |
ectoderm-derived structure | 6.11e-08 | 171 |
ectoderm | 6.11e-08 | 171 |
presumptive ectoderm | 6.11e-08 | 171 |