FFCP PHASE1:Hg19::chr16:4987174..4987185,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5493 | |EntrezGene=5493 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9273 | |HGNC=9273 | ||
|TSSclassifier=strong | |||
|UniProt=O60437 | |UniProt=O60437 | ||
|association_with_transcript=-38bp_to_ENST00000345988,NM_002705,uc002cyd.1_5end | |association_with_transcript=-38bp_to_ENST00000345988,NM_002705,uc002cyd.1_5end | ||
|cluster_id=chr16:4987174..4987185,- | |||
|coexpression_cluster_id=C2376 | |coexpression_cluster_id=C2376 | ||
|description=CAGE_peak_3_at_PPL_5end | |description=CAGE_peak_3_at_PPL_5end | ||
|id=chr16:4987174..4987185,- | |id=chr16:4987174..4987185,- | ||
|ontology_enrichment_celltype=CL:0000066!8.79e-22!254;CL:0002076!6.78e-13!43;CL:0000223!7.56e-11!59 | |ontology_enrichment_celltype=CL:0000066!8.79e-22!254;CL:0002076!6.78e-13!43;CL:0000223!7.56e-11!59 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.78e-10;42!CL:0002251;4.22e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.83e-14,42;CL:0000066,1.61e-12,253;CL:0000223,1.47e-11,58 | |||
|ontology_enrichment_development_v019=CL:0000223;1.95e-07;58 | |||
|ontology_enrichment_disease=DOID:305!7.48e-19!106;DOID:0050687!3.99e-12!143;DOID:299!4.50e-07!25 | |ontology_enrichment_disease=DOID:305!7.48e-19!106;DOID:0050687!3.99e-12!143;DOID:299!4.50e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.84e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.39e-09,106;DOID:1749,3.25e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.31e-17!169;UBERON:0000925!2.31e-17!169;UBERON:0006595!2.31e-17!169;UBERON:0000062!2.08e-16!511;UBERON:0001007!8.66e-16!155;UBERON:0001555!8.66e-16!155;UBERON:0007026!8.66e-16!155;UBERON:0000481!1.44e-15!347;UBERON:0001004!1.68e-15!72;UBERON:0000064!4.21e-15!219;UBERON:0000475!7.02e-13!365;UBERON:0000468!1.22e-12!659;UBERON:0004921!1.68e-12!129;UBERON:0004185!1.68e-12!129;UBERON:0000077!1.06e-11!130;UBERON:0005157!1.42e-10!51;UBERON:0000065!1.90e-10!53;UBERON:0000464!3.68e-10!104;UBERON:0001041!5.40e-10!98;UBERON:0001048!7.08e-10!168;UBERON:0000466!8.61e-10!126;UBERON:0000467!9.82e-10!625;UBERON:0000922!1.20e-09!612;UBERON:0000480!1.40e-09!626;UBERON:0000161!7.20e-09!35;UBERON:0007023!8.88e-09!115;UBERON:0005153!9.68e-09!37;UBERON:0000072!1.67e-08!46;UBERON:0004121!2.22e-08!169;UBERON:0005177!2.25e-08!107;UBERON:0000166!2.65e-08!21;UBERON:0002050!3.00e-08!605;UBERON:0005423!3.00e-08!605;UBERON:0005181!3.44e-08!35;UBERON:0008947!3.90e-08!38;UBERON:0003258!3.90e-08!38;UBERON:0000153!4.54e-08!129;UBERON:0007811!4.54e-08!129;UBERON:0000063!6.05e-08!97;UBERON:0005178!6.07e-08!34;UBERON:0002224!6.07e-08!34;UBERON:0000923!6.09e-08!604;UBERON:0005291!6.09e-08!604;UBERON:0006598!6.09e-08!604;UBERON:0002532!6.09e-08!604;UBERON:0000033!9.26e-08!123;UBERON:0000924!1.45e-07!173;UBERON:0006601!1.45e-07!173;UBERON:0005911!1.53e-07!82;UBERON:0001444!4.43e-07!48 | |ontology_enrichment_uberon=UBERON:0004119!2.31e-17!169;UBERON:0000925!2.31e-17!169;UBERON:0006595!2.31e-17!169;UBERON:0000062!2.08e-16!511;UBERON:0001007!8.66e-16!155;UBERON:0001555!8.66e-16!155;UBERON:0007026!8.66e-16!155;UBERON:0000481!1.44e-15!347;UBERON:0001004!1.68e-15!72;UBERON:0000064!4.21e-15!219;UBERON:0000475!7.02e-13!365;UBERON:0000468!1.22e-12!659;UBERON:0004921!1.68e-12!129;UBERON:0004185!1.68e-12!129;UBERON:0000077!1.06e-11!130;UBERON:0005157!1.42e-10!51;UBERON:0000065!1.90e-10!53;UBERON:0000464!3.68e-10!104;UBERON:0001041!5.40e-10!98;UBERON:0001048!7.08e-10!168;UBERON:0000466!8.61e-10!126;UBERON:0000467!9.82e-10!625;UBERON:0000922!1.20e-09!612;UBERON:0000480!1.40e-09!626;UBERON:0000161!7.20e-09!35;UBERON:0007023!8.88e-09!115;UBERON:0005153!9.68e-09!37;UBERON:0000072!1.67e-08!46;UBERON:0004121!2.22e-08!169;UBERON:0005177!2.25e-08!107;UBERON:0000166!2.65e-08!21;UBERON:0002050!3.00e-08!605;UBERON:0005423!3.00e-08!605;UBERON:0005181!3.44e-08!35;UBERON:0008947!3.90e-08!38;UBERON:0003258!3.90e-08!38;UBERON:0000153!4.54e-08!129;UBERON:0007811!4.54e-08!129;UBERON:0000063!6.05e-08!97;UBERON:0005178!6.07e-08!34;UBERON:0002224!6.07e-08!34;UBERON:0000923!6.09e-08!604;UBERON:0005291!6.09e-08!604;UBERON:0006598!6.09e-08!604;UBERON:0002532!6.09e-08!604;UBERON:0000033!9.26e-08!123;UBERON:0000924!1.45e-07!173;UBERON:0006601!1.45e-07!173;UBERON:0005911!1.53e-07!82;UBERON:0001444!4.43e-07!48 | ||
|ontology_enrichment_uberon_v019=UBERON:0000161;1.10e-08;19!UBERON:0000166;1.10e-08;19!UBERON:0000165;2.30e-08;28!UBERON:0005178;1.03e-07;34!UBERON:0002224;1.03e-07;34!UBERON:0004905;5.42e-07;8!UBERON:0000982;5.42e-07;8!UBERON:0004770;5.42e-07;8!UBERON:0007196;6.66e-07;15!UBERON:0001558;6.66e-07;15!UBERON:0005181;7.08e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.93e-12,160;UBERON:0000925,1.93e-12,160;UBERON:0006595,1.93e-12,160;UBERON:0001004,6.53e-12,74;UBERON:0001007,4.14e-11,145;UBERON:0001555,4.14e-11,145;UBERON:0007026,4.14e-11,145;UBERON:0000166,9.53e-10,22;UBERON:0001041,1.61e-09,87;UBERON:0005178,3.17e-09,34;UBERON:0002224,3.17e-09,34;UBERON:0005181,8.35e-09,35;UBERON:0004921,1.29e-08,118;UBERON:0000915,6.67e-08,52;UBERON:0000161,9.27e-08,36;UBERON:0000165,1.32e-07,29;UBERON:0000930,1.32e-07,29;UBERON:0000065,1.98e-07,54;UBERON:0004905,2.57e-07,8;UBERON:0000982,2.57e-07,8;UBERON:0004770,2.57e-07,8;UBERON:0007196,2.69e-07,15;UBERON:0001558,2.69e-07,15;UBERON:0005153,3.60e-07,37;UBERON:0005157,5.04e-07,47;UBERON:0000072,5.96e-07,47 | |||
|phase1_expression=0,0.214100523890983,0,1.0007329835313,0,0,0,0.631719873426831,2.61185628199839,1.22866968250754,0,0.436882744260345,0.527533956456907,3.7129905888014,3.31397375727916,0,0,0,0,0.123121058076788,0.612002073732759,0.313454721478088,0,0.410623275218653,0.251085279189606,0,0,0,0,0,0,1.83884244895785,1.8072355126695,4.80680213216824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,0,0.144846518960824,0,0,0.567208902984407,0.886917589850256,0.527008714158756,0.458426764241994,6.19301990097322,8.52804218404188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,2.68468263302986,0,0,0,0,0,0,0,0,0,0,4.79703457356788,0,0,0.132409180813219,0.573673241497627,0,1.12135520028461,0,0,0.622422070799533,0,0,0.302714855289863,0,0.468642863667593,0.624320153660641,0,1.19558944441441,0.117434498643765,0,0.140450806702248,1.02077085627447,1.10550885580591,1.44656093646072,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0.358779271377724,0.427114777637135,0.847727604638247,0.300091096084402,0.412210116953756,0,0.18611685633159,0,0,0.252433774244115,0.276149695926898,2.42469085228218,0,0,0.169560592310488,0.386521706326594,0.818238361772504,1.14721838155602,0.853815942907168,1.06023814657188,0.69716365721711,0.518305275076852,0.252320850875628,0.36497735907583,0,1.28648187638577,0,0.464367928031979,0,0.236613600079688,0.674338760312407,0.241011029883482,0.441175890929576,0.435758888184812,0.949082476444386,0.134831308160164,0.784885860501384,0,0,0,0,1.47008711385542,1.26755034821831,0,0,0,0.860919069801795,0.343135620597051,1.09750285408626,0,1.50793458617446,4.53683381276795,0.977424915930974,0,0,0.811512834825538,0.117408694235822,0.288732895522148,0,0,3.1608175918371,3.43394464837949,0,0,0,0,0,0,1.88072897675981,2.61570544662566,3.06706143332169,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,1.02738161275192,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,2.08575535922538,1.50051156317903,1.62759014219841,0.207970861530807,0,0,0.585707074963566,0.902838299183157,0,2.0694614258501,0,0,0.781952530212746,0.587403472388222,1.37257369524342,0,0,0,1.21251028578504,0,2.41912234663744,0,0.153461973288062,0,0,0,0,0,0,0,0.246381468041427,0,0,1.32945394550784,0.40101294060657,5.0644543914743,0,0.182091168006717,0.131124414959424,0.902399225814824,0.693138033939733,0.784349769176855,1.46139224653261,0.633309773357254,0,0,0,0,1.35473218771926,2.50844886927427,0.509752546090077,0,0.447749509444357,0,0,1.02580050046556,0.984043937099117,1.30151357865721,0.721287081534056,0,0,0,0,0,0.193341436584244,0,0.460511024178389,1.10269257987624,0.107420244868274,0.580066775656914,0.170453254832202,0.0890320356467374,0.991709492165869,0.384380134730212,1.27612712494584,3.6416801107998,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0.255897791311334,2.56763392820352,0,0,0.359744915166629,0.274537029736055,0.117812402345686,0.202182481573316,1.58510321173008,0,0,0.243713489631284,0,0.136499911407986,0,1.13008116620243,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,1.68886108238131,2.63435914367922,0,0,1.92444225451024,4.02181365321472,0,0.564862804660675,0,0,3.54744122829341,0,0,0,0,0,0,0,0,0,0.640944426764839,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0.748562161632879,2.3441308683503,0.121360521749513,0,0.568272293612826,8.83354593529453,2.96964680832639,18.4296421259539,1.9882952955326,1.40669416410513,0.667852230137435,0,0,0.597743964753209,0,2.01546198283421,1.22722419002586,0,0.622079175323615,1.07842021376792,1.43216939740487,0,0.986434056369336,0,0,0.969332746095218,1.39152147242777,0,2.3438498497671,1.04951999995435,1.44999915086959,3.07242310370849,3.55955110409873,1.89110145414349,0,0,0,0,0.120596438625408,0,0.221158519862449,0.295547618953547,1.53569778007781,0.21787692703798,3.34616986268648,3.23191085715948,0,1.1528195219403,0.448788222048861,0.434589487688032,2.55200927785536,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0.569261198172555,0,0.421996129056054,0.979396848954886,0.706765357169704,0,3.98104772431402,0.530745387020035,0,0,0,0,0.067401132980677,0.802577647298789,0.234264445725339,0,4.30462161650597,0,0.789168805698781,1.20990716048664,0,0.442306057399416,0,0,0.664653872707185,0,0.313932918407225,1.19472429772959,2.56148591426813,0.138674673013139,5.0332324117188,5.48757425520515,0.69647365264322,0.698906672968121,2.40780445460263,0.774050650312681,0.730893170861856,0.903270027585302,19.0098472317302,1.85337866052151,1.12990370390266,0,0,0.886351143382302,1.56441106187842,0.561111741760736,1.49417096317547,1.19885765749278,0.432271251462318,0,0.171594997861965,0.432164393964449,0.248505071130865,1.41416420770077,0.271808412147228,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0,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| ||
|short_description=p3@PPL | |short_description=p3@PPL | ||
}} | }} |
Latest revision as of 19:58, 16 September 2015
Short description: | p3@PPL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PPL_5end |
Coexpression cluster: | C2376_esophagus_amniotic_throat_tonsil_tongue_salivary_endometrioid |
Association with transcript: | -38bp_to_ENST00000345988, NM_002705, uc002cyd.1_5end |
EntrezGene: | PPL |
HGNC: | 9273 |
UniProt: | O60437 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.83e-14 | 42 |
epithelial cell | 1.61e-12 | 253 |
endodermal cell | 1.47e-11 | 58 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.93e-12 | 160 |
endoderm | 1.93e-12 | 160 |
presumptive endoderm | 1.93e-12 | 160 |
respiratory system | 6.53e-12 | 74 |
digestive system | 4.14e-11 | 145 |
digestive tract | 4.14e-11 | 145 |
primitive gut | 4.14e-11 | 145 |
oral opening | 9.53e-10 | 22 |
foregut | 1.61e-09 | 87 |
thoracic cavity element | 3.17e-09 | 34 |
thoracic cavity | 3.17e-09 | 34 |
thoracic segment organ | 8.35e-09 | 35 |
subdivision of digestive tract | 1.29e-08 | 118 |
thoracic segment of trunk | 6.67e-08 | 52 |
orifice | 9.27e-08 | 36 |
mouth | 1.32e-07 | 29 |
stomodeum | 1.32e-07 | 29 |
respiratory tract | 1.98e-07 | 54 |
articulation | 2.57e-07 | 8 |
skeletal joint | 2.57e-07 | 8 |
articular system | 2.57e-07 | 8 |
tracheobronchial tree | 2.69e-07 | 15 |
lower respiratory tract | 2.69e-07 | 15 |
epithelial bud | 3.60e-07 | 37 |
epithelial fold | 5.04e-07 | 47 |
segment of respiratory tract | 5.96e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.39e-09 | 106 |
squamous cell carcinoma | 3.25e-09 | 14 |