FFCP PHASE1:Hg19::chr13:21750622..21750646,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:21750622..21750646,-
|short_description=p2@SKA3
|description=CAGE_peak_2_at_SKA3_5end
|association_with_transcript=-10bp_to_ENST00000475251_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=221150 | |EntrezGene=221150 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20262 | |HGNC=20262 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-10bp_to_ENST00000475251_5end | |||
|cluster_id=chr13:21750622..21750646,- | |||
|coexpression_cluster_id=C109 | |||
|description=CAGE_peak_2_at_SKA3_5end | |||
|id=chr13:21750622..21750646,- | |||
|ontology_enrichment_celltype=CL:0000066!6.74e-13!254;CL:0000548!6.63e-11!679;CL:0000004!6.63e-11!679;CL:0000255!6.63e-11!679;CL:0000012!7.86e-11!682;CL:0002319!3.23e-10!25;CL:0000095!2.48e-07!17;CL:0000123!2.48e-07!17;CL:0000133!5.89e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.42e-11;25!CL:0000095;5.38e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.81e-11,25;CL:0000133,3.39e-08,59;CL:0000333,6.49e-08,41;CL:0000066,9.70e-08,253;CL:0000095,1.04e-07,17;CL:0000123,1.04e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.61e-49!235;DOID:14566!8.79e-49!239;DOID:0050687!1.43e-24!143;DOID:0050686!1.49e-24!137;DOID:305!2.01e-19!106;DOID:2531!1.67e-16!51;DOID:0060083!1.67e-16!51;DOID:1240!2.92e-13!39;DOID:8692!2.04e-10!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;8.09e-12;39!DOID:2531;2.79e-11;51!DOID:0060083;2.79e-11;51!DOID:8692;2.79e-11;31!DOID:3095;1.39e-08;22!DOID:2994;1.39e-08;22!DOID:305;4.49e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.47e-46,235;DOID:14566,2.23e-45,239;DOID:0050686,2.50e-22,137;DOID:0050687,4.53e-22,143;DOID:2531,2.11e-18,51;DOID:0060083,2.11e-18,51;DOID:305,6.53e-17,106;DOID:1240,2.00e-14,39;DOID:8692,9.61e-12,31;DOID:3095,7.92e-09,22;DOID:2994,7.92e-09,22 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.737201809504527,1.39560233594486,2.62129646556207,0.263766978228454,0.123766352960047,0.331397375727916,0,0,0,0,2.83178433576612,1.02000345622126,0.626909442956176,3.14859585844162,3.01123735160345,2.63639543149086,1.83392173795083,3.03772180964799,2.51874500203774,0,0,0,0.919421224478927,0,0,10.9228752818225,6.39761546193397,4.40400659002271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47752944117631,0,0,0,0.167186495390678,0,0,0,1.11410456885174,0,0,0.270803863765016,0.640456598628376,0.780356085359269,0.822189523018381,2.21080014228679,1.73881851441031,0,0,0,2.49280553934646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.767175371061182,0.361439152384566,0.50133791063589,0,0,0,2.07976597760949,0.886917589850256,1.22968699970376,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,0,0,0,1.78886166630035,1.72046919021225,0.694281003215189,1.13061588384802,1.67799774483962,0.825354125820202,0.626984899610432,0.258416759169329,0.71153252537342,0.66944122552934,0.805658634218294,0.760272105718513,0,3.30896772311282,0,2.14319347881791,1.12264686313085,3.49095589498299,3.06633274931766,1.89853131913626,2.19842092716489,0,0,0.436094052142534,0,1.13967460498122,0,0,0.709336764396714,1.12135520028461,2.1349799145941,0.74000264525148,1.55605517699883,0.269421344139376,1.30769522490767,0.605429710579726,0,2.10889288650417,0.936480230490962,0.570471821544449,0.298897361103602,5.51942143625695,4.37056949793955,5.05622904128095,0.408308342509787,2.7023549808589,0.309977343527296,0,0.494533858557114,2.73048408581408,0,3.53505839303539,4.25402967564678,4.71008996323111,0.877955241761676,0,0.751190294532984,1.70148274740032,2.51145489964407,0.427114777637135,0.211931901159562,2.40072876867522,0.824420233907511,0.257640540045629,0.18611685633159,1.35021065793013,2.24105111870757,1.7670364197088,0.276149695926898,0.323292113637624,1.06502877754984,2.31729825923573,2.03472710772585,0.193260853163297,1.09098448236334,1.43402297694502,6.34263271873896,9.54214331914694,8.01738205799677,4.25010325563019,6.81266297364197,3.6497735907583,0,0,0,0,0,2.01121560067735,2.02301628093722,2.41011029883482,2.64705534557745,1.52515610864684,3.32178866755535,2.42696354688296,3.13954344200554,3.07797725557112,2.21446636387394,0,0.4115740113314,0,0,0,0,18.0999870760007,1.72183813960359,0.857839051492628,0.109750285408626,0,0.301586917234893,0.370353780634118,0,2.07986957055916,0,0.463721619900307,0.234817388471643,1.29929802984966,0,0.761016608938393,0.790204397959275,2.57545848628462,0,0.468008530278475,0.148631162288728,0,0.335964256397719,0.141775097242386,2.05984602216551,0.871901815541886,0.383382679165211,2.46331618947972,1.23267807618516,0,0,0.25248486685276,5.01633364908135,0,0,0,2.05654985406647,2.40274446275134,0.857479297891735,4.26098120512371,1.30788020649984,8.58057944105115,0.258543431515556,0,3.381211010224,0.26593811658487,3.12022310734098,1.80045161983499,1.41849132023278,1.8649552531127,0.142977993658148,0,0.823240336780769,5.21177894869976,0,3.16780749173372,0,0,0.299918973546171,0,0.502257091432126,0,0.239624855491583,0,2.85273810081437,0.579125226670317,0,0.537182889719687,4.25923547175404,0,0,0,4.57370323600434,2.60279707715243,2.31986643833309,1.00509759200609,1.91381625495949,0,0,0,0.12269149171914,0.500170521059677,0.542530047399471,0,0,0.157702415033935,0.35142424497814,0,0,1.03473071292505,1.99267679560631,0.368738337083406,0.955719759148911,0.195801157462741,0,0,0,0,0.606255142892519,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,2.92998418225046,0.532685175939381,1.14978018419333,1.03850885836724,1.74315567689939,3.14234568938218,0,0.0920809889358963,1.49258782613989,1.45672934405374,0.262248829918848,0.451199612907412,0.770153371044148,2.35304930753057,1.46139224653261,0.527758144464379,0,2.72149928442425,2.59099099322567,1.54227252690289,0.270946437543853,0,2.29388645740534,0.831076008928724,2.91037181138832,2.85037839639715,5.22870902049801,0.512900250232778,0.328014645699706,0.976135183992909,0.309123034943167,5.86044574837398,6.43574099380586,0,0,1.6068392984416,0.096670718292122,2.00263202249038,2.6095624703442,2.06754858726796,1.07420244868274,0.290033387828457,2.04543905798642,0.445160178233687,0.165284915360978,0,0.127612712494584,0,0,0.31481234683064,0.6970372701606,0,0,0,0.18532421910392,0.429374660225974,0.372158369359667,0.632758849437452,0,0,0.42793898803392,0.318203247925937,0.78494864019923,1.07923474549989,0.274537029736055,1.64937363283961,0,0,0.421258456238981,0.48763373908959,0,0,0.818999468447914,0.282810863907425,0,1.10273068709225,0,0,0,0,0,0.92947049429925,0.563391205064483,1.72093622644862,0,0.7133421029625,3.19284957663538,0.422215270595328,0,1.89736586882858,1.04980416073495,0.288666338176536,1.34060455107157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.73884248946156,0,1.96032172784825,7.9895365304059,5.19369166715201,12.7343899593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| ||
|short_description=p2@SKA3 | |||
}} | }} |
Latest revision as of 19:46, 16 September 2015
Short description: | p2@SKA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SKA3_5end |
Coexpression cluster: | C109_Reticulocytes_non_acute_Hodgkin_Burkitt_retinoblastoma_lymphoma |
Association with transcript: | -10bp_to_ENST00000475251_5end |
EntrezGene: | SKA3 |
HGNC: | 20262 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.81e-11 | 25 |
neurectodermal cell | 3.39e-08 | 59 |
migratory neural crest cell | 6.49e-08 | 41 |
epithelial cell | 9.70e-08 | 253 |
neuron associated cell | 1.04e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 1.04e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.47e-46 | 235 |
disease of cellular proliferation | 2.23e-45 | 239 |
organ system cancer | 2.50e-22 | 137 |
cell type cancer | 4.53e-22 | 143 |
hematologic cancer | 2.11e-18 | 51 |
immune system cancer | 2.11e-18 | 51 |
carcinoma | 6.53e-17 | 106 |
leukemia | 2.00e-14 | 39 |
myeloid leukemia | 9.61e-12 | 31 |
germ cell and embryonal cancer | 7.92e-09 | 22 |
germ cell cancer | 7.92e-09 | 22 |