FFCP PHASE1:Hg19::chr10:122216316..122216327,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=196051 | |EntrezGene=196051 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23531 | |HGNC=23531 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VZY2 | |UniProt=Q5VZY2 | ||
|association_with_transcript=-138bp_to_ENST00000398248,ENST00000398250,ENST00000439221,NM_001030059,uc001lev.1,uc001lew.1,uc001lex.1,uc009xzl.1,uc010qtd.1_5end | |association_with_transcript=-138bp_to_ENST00000398248,ENST00000398250,ENST00000439221,NM_001030059,uc001lev.1,uc001lew.1,uc001lex.1,uc009xzl.1,uc010qtd.1_5end | ||
|cluster_id=chr10:122216316..122216327,+ | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_5_at_PPAPDC1A_5end | |description=CAGE_peak_5_at_PPAPDC1A_5end | ||
|id=chr10:122216316..122216327,+ | |id=chr10:122216316..122216327,+ | ||
|ontology_enrichment_celltype=CL:0000064!4.24e-10!3;CL:0005012!4.24e-10!3;CL:0000067!4.24e-10!3;CL:0002304!4.24e-10!3;CL:0002579!4.52e-10!3 | |ontology_enrichment_celltype=CL:0000064!4.24e-10!3;CL:0005012!4.24e-10!3;CL:0000067!4.24e-10!3;CL:0002304!4.24e-10!3;CL:0002579!4.52e-10!3 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;7.79e-88;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!5.98e-23!86;UBERON:0007284!5.98e-23!86;UBERON:0001049!9.54e-23!57;UBERON:0005068!9.54e-23!57;UBERON:0006241!9.54e-23!57;UBERON:0007135!9.54e-23!57;UBERON:0002616!8.72e-22!59;UBERON:0002346!1.32e-21!90;UBERON:0003056!1.88e-18!61;UBERON:0000955!1.76e-17!69;UBERON:0006238!1.76e-17!69;UBERON:0002020!1.72e-16!34;UBERON:0003528!1.72e-16!34;UBERON:0001893!5.03e-16!34;UBERON:0001869!5.77e-15!32;UBERON:0002780!9.51e-15!41;UBERON:0001890!9.51e-15!41;UBERON:0006240!9.51e-15!41;UBERON:0005743!1.87e-14!86;UBERON:0002791!2.01e-14!33;UBERON:0003080!2.57e-14!42;UBERON:0001017!7.20e-14!82;UBERON:0000073!8.32e-14!94;UBERON:0001016!8.32e-14!94;UBERON:0000033!1.04e-13!123;UBERON:0000488!3.83e-13!4;UBERON:0002680!4.36e-13!9;UBERON:0001895!4.36e-13!9;UBERON:0010092!4.36e-13!9;UBERON:0004733!6.02e-13!12;UBERON:0002028!6.02e-13!12;UBERON:0007277!6.02e-13!12;UBERON:0000153!9.46e-13!129;UBERON:0007811!9.46e-13!129;UBERON:0004732!7.31e-12!13;UBERON:0000988!5.07e-11!3;UBERON:0003076!3.96e-10!15;UBERON:0003057!3.96e-10!15;UBERON:0001778!4.24e-10!3;UBERON:0001775!4.24e-10!3;UBERON:0007625!5.96e-10!11;UBERON:0000956!7.48e-10!25;UBERON:0000203!7.48e-10!25;UBERON:0004121!1.17e-09!169;UBERON:0000924!2.84e-09!173;UBERON:0006601!2.84e-09!173;UBERON:0002619!3.04e-09!22;UBERON:0002308!7.12e-09!9;UBERON:0000125!7.12e-09!9;UBERON:0002203!9.07e-09!6;UBERON:0001768!9.07e-09!6;UBERON:0000064!3.53e-08!219;UBERON:0001954!4.02e-08!2;UBERON:0003022!4.02e-08!2;UBERON:0002421!4.02e-08!2;UBERON:0002600!4.02e-08!2;UBERON:0002148!9.58e-08!2;UBERON:0009662!9.58e-08!2;UBERON:0000025!4.19e-07!194;UBERON:0002298!5.46e-07!8;UBERON:0007023!8.56e-07!115 | |ontology_enrichment_uberon=UBERON:0003075!5.98e-23!86;UBERON:0007284!5.98e-23!86;UBERON:0001049!9.54e-23!57;UBERON:0005068!9.54e-23!57;UBERON:0006241!9.54e-23!57;UBERON:0007135!9.54e-23!57;UBERON:0002616!8.72e-22!59;UBERON:0002346!1.32e-21!90;UBERON:0003056!1.88e-18!61;UBERON:0000955!1.76e-17!69;UBERON:0006238!1.76e-17!69;UBERON:0002020!1.72e-16!34;UBERON:0003528!1.72e-16!34;UBERON:0001893!5.03e-16!34;UBERON:0001869!5.77e-15!32;UBERON:0002780!9.51e-15!41;UBERON:0001890!9.51e-15!41;UBERON:0006240!9.51e-15!41;UBERON:0005743!1.87e-14!86;UBERON:0002791!2.01e-14!33;UBERON:0003080!2.57e-14!42;UBERON:0001017!7.20e-14!82;UBERON:0000073!8.32e-14!94;UBERON:0001016!8.32e-14!94;UBERON:0000033!1.04e-13!123;UBERON:0000488!3.83e-13!4;UBERON:0002680!4.36e-13!9;UBERON:0001895!4.36e-13!9;UBERON:0010092!4.36e-13!9;UBERON:0004733!6.02e-13!12;UBERON:0002028!6.02e-13!12;UBERON:0007277!6.02e-13!12;UBERON:0000153!9.46e-13!129;UBERON:0007811!9.46e-13!129;UBERON:0004732!7.31e-12!13;UBERON:0000988!5.07e-11!3;UBERON:0003076!3.96e-10!15;UBERON:0003057!3.96e-10!15;UBERON:0001778!4.24e-10!3;UBERON:0001775!4.24e-10!3;UBERON:0007625!5.96e-10!11;UBERON:0000956!7.48e-10!25;UBERON:0000203!7.48e-10!25;UBERON:0004121!1.17e-09!169;UBERON:0000924!2.84e-09!173;UBERON:0006601!2.84e-09!173;UBERON:0002619!3.04e-09!22;UBERON:0002308!7.12e-09!9;UBERON:0000125!7.12e-09!9;UBERON:0002203!9.07e-09!6;UBERON:0001768!9.07e-09!6;UBERON:0000064!3.53e-08!219;UBERON:0001954!4.02e-08!2;UBERON:0003022!4.02e-08!2;UBERON:0002421!4.02e-08!2;UBERON:0002600!4.02e-08!2;UBERON:0002148!9.58e-08!2;UBERON:0009662!9.58e-08!2;UBERON:0000025!4.19e-07!194;UBERON:0002298!5.46e-07!8;UBERON:0007023!8.56e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0002680;3.75e-66;9!UBERON:0001895;3.75e-66;9!UBERON:0004733;5.59e-50;12!UBERON:0002028;5.59e-50;12!UBERON:0004732;3.04e-46;13!UBERON:0002037;1.09e-44;6!UBERON:0000988;3.66e-23;3!UBERON:0002298;2.59e-12;6!UBERON:0000073;2.49e-10;53!UBERON:0002616;2.49e-10;53!UBERON:0000955;3.69e-08;68!UBERON:0001016;2.51e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002680,3.75e-66,9;UBERON:0001895,3.75e-66,9;UBERON:0010092,3.75e-66,9;UBERON:0004733,5.59e-50,12;UBERON:0002028,5.59e-50,12;UBERON:0007277,5.59e-50,12;UBERON:0004732,3.04e-46,13;UBERON:0002037,1.22e-44,6;UBERON:0006215,1.22e-44,6;UBERON:0003076,2.90e-40,15;UBERON:0003057,2.90e-40,15;UBERON:0000988,3.27e-23,3;UBERON:0002298,2.45e-12,6;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0.168776332241266,0.194874010322397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0.205654985406647,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0.511707249066704,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174919999992391,0,0,0,0,0,0,0,0,0.241192877250816,6.10326945268333,0.110579259931225,1.18219047581419,0,0,0,0,0.341826167541004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0.795229689809303,0.817220436669454,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0.150257608997218,0,0,0.363697318405119,0.107410557042488,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0.176689145945881,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,1.83518279037446,0.131545547125698,0,0,0,0.314231179832004,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0.168776332241266,0.194874010322397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0.205654985406647,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0.511707249066704,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174919999992391,0,0,0,0,0,0,0,0,0.241192877250816,6.10326945268333,0.110579259931225,1.18219047581419,0,0,0,0,0.341826167541004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0.795229689809303,0.817220436669454,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0.150257608997218,0,0,0.363697318405119,0.107410557042488,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0.176689145945881,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,1.83518279037446,0.131545547125698,0,0,0,0.314231179832004,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@PPAPDC1A | |short_description=p5@PPAPDC1A | ||
}} | }} |
Latest revision as of 18:38, 16 September 2015
Short description: | p5@PPAPDC1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PPAPDC1A_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -138bp_to_ENST00000398248, ENST00000398250, ENST00000439221, NM_001030059, uc001lev.1, uc001lew.1, uc001lex.1, uc009xzl.1, uc010qtd.1_5end |
EntrezGene: | PPAPDC1A |
HGNC: | 23531 |
UniProt: | Q5VZY2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 3.75e-66 | 9 |
metencephalon | 3.75e-66 | 9 |
future metencephalon | 3.75e-66 | 9 |
segmental subdivision of hindbrain | 5.59e-50 | 12 |
hindbrain | 5.59e-50 | 12 |
presumptive hindbrain | 5.59e-50 | 12 |
segmental subdivision of nervous system | 3.04e-46 | 13 |
cerebellum | 1.22e-44 | 6 |
rhombic lip | 1.22e-44 | 6 |
posterior neural tube | 2.90e-40 | 15 |
chordal neural plate | 2.90e-40 | 15 |
pons | 3.27e-23 | 3 |
brainstem | 2.45e-12 | 6 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |