FFCP PHASE1:Hg19::chr20:46988646..46988664,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284749 | |EntrezGene=284749 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=27657 | |HGNC=27657 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_NR_026958,uc002xtt.2_5end | |association_with_transcript=0bp_to_NR_026958,uc002xtt.2_5end | ||
|cluster_id=chr20:46988646..46988664,+ | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_1_at_LINC00494_5end | |description=CAGE_peak_1_at_LINC00494_5end | ||
|id=chr20:46988646..46988664,+ | |id=chr20:46988646..46988664,+ | ||
|ontology_enrichment_celltype=CL:0000945!4.83e-37!24;CL:0000826!4.83e-37!24;CL:0000236!4.49e-25!14;CL:0000542!1.01e-16!53;CL:0000051!1.01e-16!53;CL:0000838!1.10e-15!52;CL:0002087!5.10e-07!119;CL:0000738!6.54e-07!140 | |ontology_enrichment_celltype=CL:0000945!4.83e-37!24;CL:0000826!4.83e-37!24;CL:0000236!4.49e-25!14;CL:0000542!1.01e-16!53;CL:0000051!1.01e-16!53;CL:0000838!1.10e-15!52;CL:0002087!5.10e-07!119;CL:0000738!6.54e-07!140 | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.55e-51;24!CL:0000236;6.23e-42;13!CL:0000542;4.31e-16;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,3.90e-51,24;CL:0000826,3.90e-51,24;CL:0000236,1.07e-45,14;CL:0000542,2.16e-26,53;CL:0000051,2.16e-26,53;CL:0000838,3.34e-24,52;CL:0002087,1.24e-09,115;CL:0000738,1.58e-08,136;CL:0002031,5.06e-08,120 | |||
|ontology_enrichment_development_v019=CL:0000051;4.31e-16;53!UBERON:0004872;3.77e-10;7 | |||
|ontology_enrichment_disease=DOID:0060058!1.70e-08!10;DOID:299!3.79e-07!25 | |ontology_enrichment_disease=DOID:0060058!1.70e-08!10;DOID:299!3.79e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:0060058;5.70e-11;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,5.42e-11,10 | |||
|ontology_enrichment_uberon=UBERON:0005409!1.81e-09!35;UBERON:0000178!3.25e-09!15;UBERON:0000179!3.25e-09!15;UBERON:0000463!3.25e-09!15;UBERON:0000945!5.45e-08!8;UBERON:0010039!5.45e-08!8 | |ontology_enrichment_uberon=UBERON:0005409!1.81e-09!35;UBERON:0000178!3.25e-09!15;UBERON:0000179!3.25e-09!15;UBERON:0000463!3.25e-09!15;UBERON:0000945!5.45e-08!8;UBERON:0010039!5.45e-08!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0004177;1.75e-21;5!UBERON:0005057;1.75e-21;5!UBERON:0002106;7.47e-14;3!UBERON:0002370;2.25e-09;2!UBERON:0005058;2.25e-09;2!UBERON:0009113;2.25e-09;2!UBERON:0002405;5.44e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.31e-15,7;UBERON:0005057,2.31e-15,7;UBERON:0002106,8.36e-14,3;UBERON:0004854,8.36e-14,3;UBERON:0009034,8.36e-14,3;UBERON:0002095,8.36e-14,3;UBERON:0004782,8.36e-14,3;UBERON:0003281,8.36e-14,3;UBERON:0009664,8.36e-14,3;UBERON:0002296,8.36e-14,3;UBERON:0005602,8.36e-14,3;UBERON:0001179,8.36e-14,3;UBERON:0006293,8.36e-14,3;UBERON:0000945,2.17e-13,8;UBERON:0010039,2.17e-13,8;UBERON:0005409,1.57e-09,25 | |||
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| ||
|short_description=p1@LINC00494 | |short_description=p1@LINC00494 | ||
}} | }} |
Latest revision as of 17:23, 16 September 2015
Short description: | p1@LINC00494 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00494_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_NR_026958, uc002xtt.2_5end |
EntrezGene: | LINC00494 |
HGNC: | 27657 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 3.90e-51 | 24 |
pro-B cell | 3.90e-51 | 24 |
B cell | 1.07e-45 | 14 |
lymphocyte | 2.16e-26 | 53 |
common lymphoid progenitor | 2.16e-26 | 53 |
lymphoid lineage restricted progenitor cell | 3.34e-24 | 52 |
nongranular leukocyte | 1.24e-09 | 115 |
leukocyte | 1.58e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 5.06e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.31e-15 | 7 |
immune organ | 2.31e-15 | 7 |
spleen | 8.36e-14 | 3 |
gastrointestinal system mesentery | 8.36e-14 | 3 |
stomach region | 8.36e-14 | 3 |
mesentery | 8.36e-14 | 3 |
gastrointestinal system serosa | 8.36e-14 | 3 |
mesentery of stomach | 8.36e-14 | 3 |
gut mesentery | 8.36e-14 | 3 |
dorsal mesentery | 8.36e-14 | 3 |
dorsal mesogastrium | 8.36e-14 | 3 |
peritoneal cavity | 8.36e-14 | 3 |
spleen primordium | 8.36e-14 | 3 |
stomach | 2.17e-13 | 8 |
food storage organ | 2.17e-13 | 8 |
gastrointestinal system | 1.57e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 5.42e-11 | 10 |