FFCP PHASE1:Hg19::chr9:140056862..140056877,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2902 | |EntrezGene=2902 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4584 | |HGNC=4584 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-280bp_to_ENST00000460273_5end | |association_with_transcript=-280bp_to_ENST00000460273_5end | ||
|cluster_id=chr9:140056862..140056877,+ | |||
|description=CAGE_peak_8_at_GRIN1_5end | |description=CAGE_peak_8_at_GRIN1_5end | ||
|id=chr9:140056862..140056877,+ | |id=chr9:140056862..140056877,+ | ||
|ontology_enrichment_celltype=CL:0002322!3.90e-11!5;CL:1000415!2.17e-08!2;CL:0000453!2.48e-07!5 | |ontology_enrichment_celltype=CL:0002322!3.90e-11!5;CL:1000415!2.17e-08!2;CL:0000453!2.48e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000453;3.33e-40;5!CL:0000990;1.01e-22;8!CL:0000451;9.78e-19;10!CL:1000415;3.06e-12;2!CL:0000322;8.96e-09;3!CL:0000306;9.36e-07;4!CL:0002222;9.36e-07;4!CL:0002224;9.36e-07;4 | |ontology_enrichment_celltype_v019=CL:0000453;3.33e-40;5!CL:0000990;1.01e-22;8!CL:0000451;9.78e-19;10!CL:1000415;3.06e-12;2!CL:0000322;8.96e-09;3!CL:0000306;9.36e-07;4!CL:0002222;9.36e-07;4!CL:0002224;9.36e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000453,2.91e-40,5;CL:0000990,9.35e-23,8;CL:0000451,9.20e-19,10;CL:1000415,3.62e-12,2;CL:0000322,8.96e-09,3;CL:0000306,9.11e-07,4;CL:0002222,9.11e-07,4;CL:0002224,9.11e-07,4 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3910;1.65e-12;2 | |ontology_enrichment_disease_v019=DOID:3910;1.65e-12;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3910,1.65e-12,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.65e-12;2!UBERON:0002173;1.65e-12;2!UBERON:0002186;1.65e-12;2!UBERON:0004821;8.96e-09;3!UBERON:0007499;8.96e-09;3!UBERON:0003215;8.96e-09;3!UBERON:0010368;8.96e-09;3!UBERON:0009911;8.96e-09;3!UBERON:0002299;8.96e-09;3!UBERON:0006524;8.96e-09;3!UBERON:0008874;8.96e-09;3!UBERON:0002169;8.96e-09;3!UBERON:0004894;8.96e-09;3!UBERON:0002110;1.35e-08;3!UBERON:0009856;6.87e-07;4!UBERON:0010077;9.36e-07;4!UBERON:0005389;9.36e-07;4!UBERON:0000484;9.36e-07;4!UBERON:0000965;9.36e-07;4!UBERON:0001803;9.36e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0004903;1.65e-12;2!UBERON:0002173;1.65e-12;2!UBERON:0002186;1.65e-12;2!UBERON:0004821;8.96e-09;3!UBERON:0007499;8.96e-09;3!UBERON:0003215;8.96e-09;3!UBERON:0010368;8.96e-09;3!UBERON:0009911;8.96e-09;3!UBERON:0002299;8.96e-09;3!UBERON:0006524;8.96e-09;3!UBERON:0008874;8.96e-09;3!UBERON:0002169;8.96e-09;3!UBERON:0004894;8.96e-09;3!UBERON:0002110;1.35e-08;3!UBERON:0009856;6.87e-07;4!UBERON:0010077;9.36e-07;4!UBERON:0005389;9.36e-07;4!UBERON:0000484;9.36e-07;4!UBERON:0000965;9.36e-07;4!UBERON:0001803;9.36e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.65e-12,2;UBERON:0002173,1.65e-12,2;UBERON:0002186,1.65e-12,2;UBERON:0004821,8.96e-09,3;UBERON:0003215,8.96e-09,3;UBERON:0010368,8.96e-09,3;UBERON:0009911,8.96e-09,3;UBERON:0002299,8.96e-09,3;UBERON:0006524,8.96e-09,3;UBERON:0008874,8.96e-09,3;UBERON:0002169,8.96e-09,3;UBERON:0004894,8.96e-09,3;UBERON:0002110,1.51e-08,3;UBERON:0006242,1.51e-08,3;UBERON:0010077,9.11e-07,4;UBERON:0005389,9.11e-07,4;UBERON:0000484,9.11e-07,4;UBERON:0002546,9.11e-07,4;UBERON:0000965,9.11e-07,4;UBERON:0001803,9.11e-07,4;UBERON:0003073,9.11e-07,4;UBERON:0005426,9.11e-07,4 | |||
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| ||
|short_description=p8@GRIN1 | |short_description=p8@GRIN1 | ||
}} | }} |
Latest revision as of 16:05, 16 September 2015
Short description: | p8@GRIN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_GRIN1_5end |
Coexpression cluster: | NA |
Association with transcript: | -280bp_to_ENST00000460273_5end |
EntrezGene: | GRIN1 |
HGNC: | 4584 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 2.91e-40 | 5 |
conventional dendritic cell | 9.35e-23 | 8 |
dendritic cell | 9.20e-19 | 10 |
epithelial cell of gall bladder | 3.62e-12 | 2 |
pneumocyte | 8.96e-09 | 3 |
crystallin accumulating cell | 9.11e-07 | 4 |
vertebrate lens cell | 9.11e-07 | 4 |
lens epithelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.65e-12 | 2 |
alveolar duct | 1.65e-12 | 2 |
bronchiole | 1.65e-12 | 2 |
pulmonary alveolus epithelium | 8.96e-09 | 3 |
alveolus | 8.96e-09 | 3 |
pulmonary lobule | 8.96e-09 | 3 |
lobule | 8.96e-09 | 3 |
alveolus of lung | 8.96e-09 | 3 |
alveolar system | 8.96e-09 | 3 |
pulmonary acinus | 8.96e-09 | 3 |
alveolar sac | 8.96e-09 | 3 |
alveolar wall | 8.96e-09 | 3 |
gallbladder | 1.51e-08 | 3 |
gall bladder primordium | 1.51e-08 | 3 |
cuboidal epithelium | 9.11e-07 | 4 |
transparent eye structure | 9.11e-07 | 4 |
simple cuboidal epithelium | 9.11e-07 | 4 |
cranial placode | 9.11e-07 | 4 |
lens of camera-type eye | 9.11e-07 | 4 |
epithelium of lens | 9.11e-07 | 4 |
lens placode | 9.11e-07 | 4 |
lens vesicle | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 1.65e-12 | 2 |