FFCP PHASE1:Hg19::chr6:160113814..160113877,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-132bp_to_ENST00000540491_5end | |association_with_transcript=-132bp_to_ENST00000540491_5end | ||
|cluster_id=chr6:160113814..160113877,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_SOD2_5end | |description=CAGE_peak_4_at_SOD2_5end | ||
|id=chr6:160113814..160113877,- | |id=chr6:160113814..160113877,- | ||
|ontology_enrichment_celltype=CL:0002057!2.81e-20!42;CL:0000860!1.38e-19!45;CL:0000766!3.11e-19!76;CL:0002194!1.07e-17!63;CL:0000576!1.07e-17!63;CL:0000040!1.07e-17!63;CL:0000559!1.07e-17!63;CL:0002009!3.50e-17!65;CL:0000839!6.74e-16!70;CL:0000557!2.68e-15!71;CL:0000763!3.32e-08!112;CL:0000049!3.32e-08!112 | |ontology_enrichment_celltype=CL:0002057!2.81e-20!42;CL:0000860!1.38e-19!45;CL:0000766!3.11e-19!76;CL:0002194!1.07e-17!63;CL:0000576!1.07e-17!63;CL:0000040!1.07e-17!63;CL:0000559!1.07e-17!63;CL:0002009!3.50e-17!65;CL:0000839!6.74e-16!70;CL:0000557!2.68e-15!71;CL:0000763!3.32e-08!112;CL:0000049!3.32e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.27e-22;33!CL:0002057;7.27e-22;33!CL:0000473;7.34e-21;39!CL:0000234;7.34e-21;39!CL:0000576;1.67e-14;48!CL:0000766;1.25e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.29e-26,48;CL:0000234,1.29e-26,48;CL:0000860,1.70e-23,42;CL:0002057,1.70e-23,42;CL:0000766,2.52e-22,72;CL:0002194,2.04e-21,59;CL:0000576,2.04e-21,59;CL:0000040,2.04e-21,59;CL:0000559,2.04e-21,59;CL:0002009,7.99e-21,61;CL:0000557,2.20e-18,67;CL:0000839,3.32e-18,66;CL:0000763,1.58e-08,108;CL:0000049,1.58e-08,108 | |||
|ontology_enrichment_development_v019=CL:0002057;8.43e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!5.79e-16!167;UBERON:0002193!1.07e-13!112;UBERON:0002390!1.77e-13!102;UBERON:0003061!1.77e-13!102;UBERON:0007023!2.55e-13!115;UBERON:0000926!2.58e-13!448;UBERON:0004120!2.58e-13!448;UBERON:0006603!2.58e-13!448;UBERON:0002371!7.69e-13!80;UBERON:0002405!1.64e-11!115;UBERON:0001474!1.01e-10!86;UBERON:0004765!1.88e-10!101;UBERON:0001434!1.88e-10!101;UBERON:0003081!2.57e-09!216;UBERON:0002050!6.24e-08!605;UBERON:0005423!6.24e-08!605;UBERON:0000923!7.27e-08!604;UBERON:0005291!7.27e-08!604;UBERON:0006598!7.27e-08!604;UBERON:0002532!7.27e-08!604;UBERON:0000467!1.12e-07!625;UBERON:0000922!1.36e-07!612;UBERON:0000480!1.92e-07!626;UBERON:0000468!2.18e-07!659 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.90e-20,315;UBERON:0004120,1.90e-20,315;UBERON:0006603,1.90e-20,315;UBERON:0002204,2.42e-19,167;UBERON:0002193,6.81e-16,108;UBERON:0002371,7.94e-16,76;UBERON:0002390,1.20e-15,98;UBERON:0003061,1.20e-15,98;UBERON:0003081,1.04e-13,203;UBERON:0002405,2.84e-13,93;UBERON:0004765,3.30e-13,90;UBERON:0001434,4.91e-13,100;UBERON:0001474,5.60e-13,82;UBERON:0007023,4.63e-12,114;UBERON:0000923,1.70e-09,560;UBERON:0010316,1.70e-09,560;UBERON:0005291,1.70e-09,560;UBERON:0006598,1.70e-09,560;UBERON:0010317,1.70e-09,560;UBERON:0002532,1.70e-09,560;UBERON:0002050,2.08e-09,564;UBERON:0005423,1.96e-08,581;UBERON:0000922,3.53e-07,592 | |||
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| ||
|short_description=p4@SOD2 | |short_description=p4@SOD2 | ||
}} | }} |
Latest revision as of 14:45, 16 September 2015
Short description: | p4@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SOD2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -132bp_to_ENST00000540491_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.29e-26 | 48 |
phagocyte | 1.29e-26 | 48 |
classical monocyte | 1.70e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.70e-23 | 42 |
myeloid leukocyte | 2.52e-22 | 72 |
monopoietic cell | 2.04e-21 | 59 |
monocyte | 2.04e-21 | 59 |
monoblast | 2.04e-21 | 59 |
promonocyte | 2.04e-21 | 59 |
macrophage dendritic cell progenitor | 7.99e-21 | 61 |
granulocyte monocyte progenitor cell | 2.20e-18 | 67 |
myeloid lineage restricted progenitor cell | 3.32e-18 | 66 |
myeloid cell | 1.58e-08 | 108 |
common myeloid progenitor | 1.58e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.90e-20 | 315 |
mesoderm-derived structure | 1.90e-20 | 315 |
presumptive mesoderm | 1.90e-20 | 315 |
musculoskeletal system | 2.42e-19 | 167 |
hemolymphoid system | 6.81e-16 | 108 |
bone marrow | 7.94e-16 | 76 |
hematopoietic system | 1.20e-15 | 98 |
blood island | 1.20e-15 | 98 |
lateral plate mesoderm | 1.04e-13 | 203 |
immune system | 2.84e-13 | 93 |
skeletal element | 3.30e-13 | 90 |
skeletal system | 4.91e-13 | 100 |
bone element | 5.60e-13 | 82 |
adult organism | 4.63e-12 | 114 |
germ layer | 1.70e-09 | 560 |
germ layer / neural crest | 1.70e-09 | 560 |
embryonic tissue | 1.70e-09 | 560 |
presumptive structure | 1.70e-09 | 560 |
germ layer / neural crest derived structure | 1.70e-09 | 560 |
epiblast (generic) | 1.70e-09 | 560 |
embryonic structure | 2.08e-09 | 564 |
developing anatomical structure | 1.96e-08 | 581 |
embryo | 3.53e-07 | 592 |