FFCP PHASE1:Hg19::chr13:111522495..111522503,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=283487 | |EntrezGene=283487 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27492 | |HGNC=27492 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=151bp_to_NR_027701,uc001vrk.2_5end | |association_with_transcript=151bp_to_NR_027701,uc001vrk.2_5end | ||
|cluster_id=chr13:111522495..111522503,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_8_at_LINC00346_5end | |description=CAGE_peak_8_at_LINC00346_5end | ||
|id=chr13:111522495..111522503,- | |id=chr13:111522495..111522503,- | ||
|ontology_enrichment_celltype=CL:0002057!1.55e-65!42;CL:0000860!7.81e-61!45;CL:0002194!2.77e-41!63;CL:0000576!2.77e-41!63;CL:0000040!2.77e-41!63;CL:0000559!2.77e-41!63;CL:0002009!7.03e-40!65;CL:0000839!1.02e-36!70;CL:0000557!3.90e-36!71;CL:0000766!1.84e-33!76;CL:0002087!1.34e-23!119;CL:0000763!3.44e-21!112;CL:0000049!3.44e-21!112;CL:0002031!1.64e-20!124;CL:0000738!2.78e-19!140;CL:0000037!1.02e-14!172;CL:0000566!1.02e-14!172;CL:0002032!3.71e-14!165;CL:0000837!3.71e-14!165;CL:0000988!1.28e-13!182;CL:0000134!9.61e-08!358;CL:0002320!1.77e-07!365 | |ontology_enrichment_celltype=CL:0002057!1.55e-65!42;CL:0000860!7.81e-61!45;CL:0002194!2.77e-41!63;CL:0000576!2.77e-41!63;CL:0000040!2.77e-41!63;CL:0000559!2.77e-41!63;CL:0002009!7.03e-40!65;CL:0000839!1.02e-36!70;CL:0000557!3.90e-36!71;CL:0000766!1.84e-33!76;CL:0002087!1.34e-23!119;CL:0000763!3.44e-21!112;CL:0000049!3.44e-21!112;CL:0002031!1.64e-20!124;CL:0000738!2.78e-19!140;CL:0000037!1.02e-14!172;CL:0000566!1.02e-14!172;CL:0002032!3.71e-14!165;CL:0000837!3.71e-14!165;CL:0000988!1.28e-13!182;CL:0000134!9.61e-08!358;CL:0002320!1.77e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.50e-69;33!CL:0002057;1.50e-69;33!CL:0000473;1.60e-48;39!CL:0000234;1.60e-48;39!CL:0000576;2.24e-31;48!CL:0000766;3.53e-19;69!CL:0002087;3.16e-12;104!CL:0000763;1.72e-10;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.93e-60,42;CL:0002057,4.93e-60,42;CL:0000473,1.96e-52,48;CL:0000234,1.96e-52,48;CL:0002194,8.73e-42,59;CL:0000576,8.73e-42,59;CL:0000040,8.73e-42,59;CL:0000559,8.73e-42,59;CL:0002009,2.07e-40,61;CL:0000839,2.48e-37,66;CL:0000557,9.06e-37,67;CL:0000766,3.43e-34,72;CL:0000763,1.37e-22,108;CL:0000049,1.37e-22,108;CL:0002087,3.64e-21,115;CL:0002031,3.00e-20,120;CL:0000738,9.17e-18,136;CL:0002032,7.41e-15,161;CL:0000837,7.41e-15,161;CL:0000037,3.40e-14,168;CL:0000988,2.02e-13,177 | |||
|ontology_enrichment_development_v019=CL:0002057;8.67e-42;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.47e-31!80;UBERON:0001474!4.92e-29!86;UBERON:0004765!2.38e-26!101;UBERON:0001434!2.38e-26!101;UBERON:0002390!5.27e-26!102;UBERON:0003061!5.27e-26!102;UBERON:0002193!3.06e-23!112;UBERON:0002405!1.64e-20!115;UBERON:0002204!7.30e-17!167;UBERON:0003081!1.29e-09!216;UBERON:0002384!4.09e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.28e-32,76;UBERON:0001474,5.79e-30,82;UBERON:0004765,3.01e-27,90;UBERON:0002405,2.39e-26,93;UBERON:0002390,5.72e-25,98;UBERON:0003061,5.72e-25,98;UBERON:0001434,1.87e-24,100;UBERON:0002193,1.37e-22,108;UBERON:0002204,2.75e-14,167;UBERON:0003081,1.45e-11,203;UBERON:0000926,5.11e-07,315;UBERON:0004120,5.11e-07,315;UBERON:0006603,5.11e-07,315 | |||
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|short_description=p8@LINC00346 | |short_description=p8@LINC00346 | ||
}} | }} |
Latest revision as of 13:32, 16 September 2015
Short description: | p8@LINC00346 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LINC00346_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 151bp_to_NR_027701, uc001vrk.2_5end |
EntrezGene: | LINC00346 |
HGNC: | 27492 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.93e-60 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.93e-60 | 42 |
defensive cell | 1.96e-52 | 48 |
phagocyte | 1.96e-52 | 48 |
monopoietic cell | 8.73e-42 | 59 |
monocyte | 8.73e-42 | 59 |
monoblast | 8.73e-42 | 59 |
promonocyte | 8.73e-42 | 59 |
macrophage dendritic cell progenitor | 2.07e-40 | 61 |
myeloid lineage restricted progenitor cell | 2.48e-37 | 66 |
granulocyte monocyte progenitor cell | 9.06e-37 | 67 |
myeloid leukocyte | 3.43e-34 | 72 |
myeloid cell | 1.37e-22 | 108 |
common myeloid progenitor | 1.37e-22 | 108 |
nongranular leukocyte | 3.64e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 3.00e-20 | 120 |
leukocyte | 9.17e-18 | 136 |
hematopoietic oligopotent progenitor cell | 7.41e-15 | 161 |
hematopoietic multipotent progenitor cell | 7.41e-15 | 161 |
hematopoietic stem cell | 3.40e-14 | 168 |
hematopoietic cell | 2.02e-13 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.28e-32 | 76 |
bone element | 5.79e-30 | 82 |
skeletal element | 3.01e-27 | 90 |
immune system | 2.39e-26 | 93 |
hematopoietic system | 5.72e-25 | 98 |
blood island | 5.72e-25 | 98 |
skeletal system | 1.87e-24 | 100 |
hemolymphoid system | 1.37e-22 | 108 |
musculoskeletal system | 2.75e-14 | 167 |
lateral plate mesoderm | 1.45e-11 | 203 |
mesoderm | 5.11e-07 | 315 |
mesoderm-derived structure | 5.11e-07 | 315 |
presumptive mesoderm | 5.11e-07 | 315 |