FFCP PHASE1:Hg19::chr20:44575317..44575337,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=63935 | |EntrezGene=63935 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=16200 | |HGNC=16200 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-344bp_to_uc002xqu.2_5end | |association_with_transcript=-344bp_to_uc002xqu.2_5end | ||
|cluster_id=chr20:44575317..44575337,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_PCIF1_5end | |description=CAGE_peak_4_at_PCIF1_5end | ||
|id=chr20:44575317..44575337,+ | |id=chr20:44575317..44575337,+ | ||
|ontology_enrichment_celltype=CL:0002057!9.08e-46!42;CL:0000860!2.24e-42!45;CL:0002194!3.67e-34!63;CL:0000576!3.67e-34!63;CL:0000040!3.67e-34!63;CL:0000559!3.67e-34!63;CL:0002009!5.86e-33!65;CL:0000839!3.01e-30!70;CL:0000557!9.46e-30!71;CL:0000766!1.85e-27!76;CL:0002087!1.61e-24!119;CL:0002031!2.81e-23!124;CL:0000763!2.42e-22!112;CL:0000049!2.42e-22!112;CL:0002032!2.46e-20!165;CL:0000837!2.46e-20!165;CL:0000738!6.69e-20!140;CL:0000037!3.14e-19!172;CL:0000566!3.14e-19!172;CL:0000988!8.51e-18!182;CL:0000159!8.80e-10!2;CL:0000134!2.96e-09!358;CL:0002320!6.25e-09!365;CL:0000219!1.65e-08!390 | |ontology_enrichment_celltype=CL:0002057!9.08e-46!42;CL:0000860!2.24e-42!45;CL:0002194!3.67e-34!63;CL:0000576!3.67e-34!63;CL:0000040!3.67e-34!63;CL:0000559!3.67e-34!63;CL:0002009!5.86e-33!65;CL:0000839!3.01e-30!70;CL:0000557!9.46e-30!71;CL:0000766!1.85e-27!76;CL:0002087!1.61e-24!119;CL:0002031!2.81e-23!124;CL:0000763!2.42e-22!112;CL:0000049!2.42e-22!112;CL:0002032!2.46e-20!165;CL:0000837!2.46e-20!165;CL:0000738!6.69e-20!140;CL:0000037!3.14e-19!172;CL:0000566!3.14e-19!172;CL:0000988!8.51e-18!182;CL:0000159!8.80e-10!2;CL:0000134!2.96e-09!358;CL:0002320!6.25e-09!365;CL:0000219!1.65e-08!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.11e-80;33!CL:0002057;5.11e-80;33!CL:0000473;6.30e-58;39!CL:0000234;6.30e-58;39!CL:0000576;6.89e-36;48!CL:0000766;1.25e-20;69!CL:0002087;8.99e-14;104!CL:0000763;2.44e-12;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.13e-69,42;CL:0002057,3.13e-69,42;CL:0000473,2.25e-60,48;CL:0000234,2.25e-60,48;CL:0002194,5.74e-48,59;CL:0000576,5.74e-48,59;CL:0000040,5.74e-48,59;CL:0000559,5.74e-48,59;CL:0002009,2.30e-46,61;CL:0000839,8.88e-43,66;CL:0000557,4.01e-42,67;CL:0000766,4.04e-39,72;CL:0002087,3.33e-27,115;CL:0002031,5.28e-26,120;CL:0000763,1.32e-25,108;CL:0000049,1.32e-25,108;CL:0000738,9.52e-23,136;CL:0002032,6.10e-19,161;CL:0000837,6.10e-19,161;CL:0000037,4.47e-18,168;CL:0000988,4.61e-17,177;CL:0000134,1.68e-07,354;CL:0002320,2.59e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.62e-52;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.07e-31!80;UBERON:0001474!2.45e-28!86;UBERON:0002390!3.74e-25!102;UBERON:0003061!3.74e-25!102;UBERON:0002405!1.64e-23!115;UBERON:0004765!2.68e-23!101;UBERON:0001434!2.68e-23!101;UBERON:0002193!2.19e-22!112;UBERON:0002204!7.41e-12!167;UBERON:0003081!9.84e-10!216;UBERON:0002384!2.92e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.36e-37,76;UBERON:0001474,3.40e-34,82;UBERON:0004765,4.94e-31,90;UBERON:0002405,5.52e-30,93;UBERON:0002390,2.23e-28,98;UBERON:0003061,2.23e-28,98;UBERON:0001434,8.82e-28,100;UBERON:0002193,1.32e-25,108;UBERON:0002204,6.07e-16,167;UBERON:0003081,8.92e-13,203;UBERON:0000926,1.71e-07,315;UBERON:0004120,1.71e-07,315;UBERON:0006603,1.71e-07,315;UBERON:0002384,4.69e-07,371 | |||
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|short_description=p4@PCIF1 | |short_description=p4@PCIF1 | ||
}} | }} |
Latest revision as of 13:26, 16 September 2015
Short description: | p4@PCIF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PCIF1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -344bp_to_uc002xqu.2_5end |
EntrezGene: | PCIF1 |
HGNC: | 16200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.13e-69 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.13e-69 | 42 |
defensive cell | 2.25e-60 | 48 |
phagocyte | 2.25e-60 | 48 |
monopoietic cell | 5.74e-48 | 59 |
monocyte | 5.74e-48 | 59 |
monoblast | 5.74e-48 | 59 |
promonocyte | 5.74e-48 | 59 |
macrophage dendritic cell progenitor | 2.30e-46 | 61 |
myeloid lineage restricted progenitor cell | 8.88e-43 | 66 |
granulocyte monocyte progenitor cell | 4.01e-42 | 67 |
myeloid leukocyte | 4.04e-39 | 72 |
nongranular leukocyte | 3.33e-27 | 115 |
hematopoietic lineage restricted progenitor cell | 5.28e-26 | 120 |
myeloid cell | 1.32e-25 | 108 |
common myeloid progenitor | 1.32e-25 | 108 |
leukocyte | 9.52e-23 | 136 |
hematopoietic oligopotent progenitor cell | 6.10e-19 | 161 |
hematopoietic multipotent progenitor cell | 6.10e-19 | 161 |
hematopoietic stem cell | 4.47e-18 | 168 |
hematopoietic cell | 4.61e-17 | 177 |
mesenchymal cell | 1.68e-07 | 354 |
connective tissue cell | 2.59e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.36e-37 | 76 |
bone element | 3.40e-34 | 82 |
skeletal element | 4.94e-31 | 90 |
immune system | 5.52e-30 | 93 |
hematopoietic system | 2.23e-28 | 98 |
blood island | 2.23e-28 | 98 |
skeletal system | 8.82e-28 | 100 |
hemolymphoid system | 1.32e-25 | 108 |
musculoskeletal system | 6.07e-16 | 167 |
lateral plate mesoderm | 8.92e-13 | 203 |
mesoderm | 1.71e-07 | 315 |
mesoderm-derived structure | 1.71e-07 | 315 |
presumptive mesoderm | 1.71e-07 | 315 |
connective tissue | 4.69e-07 | 371 |