FFCP PHASE1:Hg19::chr2:113982635..113982648,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:113982635..113982648,-
|short_description=p8@PAX8
|description=CAGE_peak_8_at_PAX8_5end
|association_with_transcript=478bp_to_CR936798_5end
|EntrezGene=78...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7849 | |EntrezGene=7849 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=8622 | |HGNC=8622 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=478bp_to_CR936798_5end | |||
|cluster_id=chr2:113982635..113982648,- | |||
|coexpression_cluster_id=C1493 | |||
|description=CAGE_peak_8_at_PAX8_5end | |||
|id=chr2:113982635..113982648,- | |||
|ontology_enrichment_celltype=CL:0002149!6.03e-11!6;CL:0002255!6.03e-11!6;CL:1000497!3.63e-09!18;CL:0002518!3.63e-09!18;CL:1000507!9.69e-09!12;CL:1000494!9.69e-09!12;CL:0000239!1.02e-07!3;CL:1000615!1.02e-07!3;CL:0002306!1.02e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002149;1.58e-36;6!CL:0002255;1.58e-36;6!CL:0000159;4.29e-18;2!CL:0000313;4.64e-10;1!CL:0000319;8.99e-10;1!CL:0000499;9.77e-08;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,1.42e-36,6;CL:0002255,1.42e-36,6;CL:0000159,3.16e-18,2;CL:0000313,3.71e-10,1;CL:0000319,8.24e-10,1;CL:0000499,9.56e-08,28 | |||
|ontology_enrichment_development_v019=UBERON:0007297;4.29e-18;2!UBERON:0007123;1.00e-16;5!UBERON:0005795;2.17e-14;10!UBERON:0003918;6.27e-14;10!UBERON:0007687;6.27e-14;10!UBERON:0005754;4.64e-10;1 | |||
|ontology_enrichment_disease=DOID:120!6.90e-15!27;DOID:193!1.35e-13!29;DOID:299!2.24e-11!25;DOID:3001!6.03e-11!6 | |||
|ontology_enrichment_disease_v019=DOID:3001;1.58e-36;6!DOID:299;5.72e-27;25!DOID:120;5.64e-25;27!DOID:193;3.61e-23;29!DOID:4468;1.56e-18;2!DOID:2152;4.64e-10;1!DOID:3030;8.99e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,1.42e-36,6;DOID:299,4.47e-27,25;DOID:120,5.11e-25,27;DOID:193,3.29e-23,29;DOID:4468,1.20e-18,2;DOID:2152,3.71e-10,1;DOID:305,7.33e-10,106;DOID:3030,8.24e-10,1;DOID:0050687,1.54e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0000489!1.01e-14!32;UBERON:0001008!1.84e-13!45;UBERON:0006554!3.14e-12!44;UBERON:0002113!3.47e-12!27;UBERON:0003918!3.47e-12!27;UBERON:0005095!3.47e-12!27;UBERON:0007687!3.47e-12!27;UBERON:0005156!5.80e-12!59;UBERON:0000990!5.80e-12!59;UBERON:0003133!1.30e-11!48;UBERON:0004175!1.51e-11!25;UBERON:0003064!5.23e-10!37;UBERON:0003134!2.30e-09!37;UBERON:0000474!2.30e-09!37;UBERON:0003100!2.61e-09!41;UBERON:0003887!3.60e-09!21;UBERON:0000080!3.74e-09!18;UBERON:0002120!3.74e-09!18;UBERON:0004875!3.74e-09!18;UBERON:0005721!3.74e-09!18;UBERON:0005754!3.74e-09!18;UBERON:0007297!3.74e-09!18;UBERON:0003886!4.78e-09!63;UBERON:0000058!9.46e-09!26;UBERON:0009773!9.69e-09!12;UBERON:0001231!9.69e-09!12;UBERON:0004810!9.69e-09!12;UBERON:0002046!1.52e-08!5;UBERON:0004117!1.52e-08!5;UBERON:0007689!1.52e-08!5;UBERON:0007123!1.52e-08!5;UBERON:0003091!1.52e-08!5;UBERON:0006947!1.74e-08!3;UBERON:0004054!1.74e-08!3;UBERON:0004876!4.75e-08!20;UBERON:0006853!1.02e-07!3;UBERON:0007685!1.02e-07!3;UBERON:0004134!1.02e-07!3;UBERON:0002553!1.16e-07!70;UBERON:0006555!1.22e-07!17;UBERON:0005103!1.22e-07!17;UBERON:0000083!1.22e-07!17;UBERON:0009201!1.22e-07!17;UBERON:0004819!1.22e-07!17;UBERON:0006553!1.22e-07!17;UBERON:0003074!1.22e-07!17;UBERON:0003060!1.22e-07!17;UBERON:0003975!2.69e-07!22;UBERON:0005795!2.97e-07!22;UBERON:0003103!3.32e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;1.07e-26;3!UBERON:0004054;1.07e-26;3!UBERON:0004175;1.17e-25;21!UBERON:0005904;3.42e-20;4!UBERON:0002046;1.00e-16;5!UBERON:0000995;7.48e-13;17!UBERON:0003975;3.94e-12;18!UBERON:0001000;2.16e-10;1!UBERON:0005352;2.16e-10;1!UBERON:0003133;2.20e-10;44!UBERON:0000998;4.64e-10;1!UBERON:0004911;4.64e-10;1!UBERON:0006868;4.64e-10;1!UBERON:0001301;8.99e-10;1!UBERON:0003134;6.08e-09;33!UBERON:0000058;2.09e-08;10!UBERON:0000474;3.04e-08;37!UBERON:0005156;1.08e-07;59!UBERON:0000990;1.08e-07;59!UBERON:0003135;1.10e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,1.46e-26,3;UBERON:0004054,1.46e-26,3;UBERON:0004175,2.24e-21,25;UBERON:0005904,4.31e-20,4;UBERON:0002046,1.00e-16,5;UBERON:0004117,1.00e-16,5;UBERON:0007689,1.00e-16,5;UBERON:0007123,1.00e-16,5;UBERON:0003091,1.00e-16,5;UBERON:0003133,1.75e-13,48;UBERON:0002113,2.21e-11,26;UBERON:0003918,2.21e-11,26;UBERON:0011143,2.21e-11,26;UBERON:0005095,2.21e-11,26;UBERON:0007687,2.21e-11,26;UBERON:0005156,9.92e-11,59;UBERON:0000990,9.92e-11,59;UBERON:0000995,2.18e-10,21;UBERON:0001000,2.37e-10,1;UBERON:0005352,2.37e-10,1;UBERON:0004911,3.71e-10,1;UBERON:0000998,4.44e-10,1;UBERON:0006868,4.44e-10,1;UBERON:0005795,6.57e-10,22;UBERON:0003975,6.57e-10,22;UBERON:0001301,1.17e-09,1;UBERON:0000489,1.78e-09,31;UBERON:0003134,3.94e-08,37;UBERON:0000474,3.94e-08,37;UBERON:0009722,6.99e-08,11;UBERON:0007690,6.99e-08,11;UBERON:0003135,1.19e-07,11;UBERON:0003100,2.73e-07,41 | |||
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| ||
|short_description=p8@PAX8 | |||
}} | }} |
Latest revision as of 13:00, 16 September 2015
Short description: | p8@PAX8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PAX8_5end |
Coexpression cluster: | C1493_clear_thyroid_endometrioid_serous_throat_anaplastic_renal |
Association with transcript: | 478bp_to_CR936798_5end |
EntrezGene: | PAX8 |
HGNC: | 8622 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 1.42e-36 | 6 |
stromal cell of endometrium | 1.42e-36 | 6 |
seromucus secreting cell | 3.16e-18 | 2 |
serous secreting cell | 3.71e-10 | 1 |
mucus secreting cell | 8.24e-10 | 1 |
stromal cell | 9.56e-08 | 28 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 1.46e-26 | 3 |
internal male genitalia | 1.46e-26 | 3 |
internal genitalia | 2.24e-21 | 25 |
duct of male reproductive system | 4.31e-20 | 4 |
thyroid gland | 1.00e-16 | 5 |
pharyngeal pouch | 1.00e-16 | 5 |
thyroid diverticulum | 1.00e-16 | 5 |
pharyngeal pouch 2 | 1.00e-16 | 5 |
thyroid primordium | 1.00e-16 | 5 |
reproductive organ | 1.75e-13 | 48 |
kidney | 2.21e-11 | 26 |
kidney mesenchyme | 2.21e-11 | 26 |
upper urinary tract | 2.21e-11 | 26 |
kidney rudiment | 2.21e-11 | 26 |
kidney field | 2.21e-11 | 26 |
reproductive structure | 9.92e-11 | 59 |
reproductive system | 9.92e-11 | 59 |
uterus | 2.18e-10 | 21 |
vas deferens | 2.37e-10 | 1 |
spermatic cord | 2.37e-10 | 1 |
epithelium of female gonad | 3.71e-10 | 1 |
seminal vesicle | 4.44e-10 | 1 |
seminal fluid secreting gland | 4.44e-10 | 1 |
embryonic uterus | 6.57e-10 | 22 |
internal female genitalia | 6.57e-10 | 22 |
epididymis | 1.17e-09 | 1 |
cavitated compound organ | 1.78e-09 | 31 |
female reproductive organ | 3.94e-08 | 37 |
female reproductive system | 3.94e-08 | 37 |
entire pharyngeal arch endoderm | 6.99e-08 | 11 |
early pharyngeal endoderm | 6.99e-08 | 11 |
male reproductive organ | 1.19e-07 | 11 |
female organism | 2.73e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 1.42e-36 | 6 |
adenocarcinoma | 4.47e-27 | 25 |
female reproductive organ cancer | 5.11e-25 | 27 |
reproductive organ cancer | 3.29e-23 | 29 |
clear cell adenocarcinoma | 1.20e-18 | 2 |
ovary epithelial cancer | 3.71e-10 | 1 |
carcinoma | 7.33e-10 | 106 |
mucinous adenocarcinoma | 8.24e-10 | 1 |
cell type cancer | 1.54e-09 | 143 |