FFCP PHASE1:Hg19::chr5:155754127..155754162,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:155754127..155754162,+
|short_description=p2@SGCD
|description=CAGE_peak_2_at_SGCD_5end
|association_with_transcript=169bp_to_ENST00000524347_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6444 | |EntrezGene=6444 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10807 | |HGNC=10807 | ||
|TSSclassifier=strong | |||
|UniProt=E5RI34 | |UniProt=E5RI34 | ||
|association_with_transcript=169bp_to_ENST00000524347_5end | |||
|cluster_id=chr5:155754127..155754162,+ | |||
|coexpression_cluster_id=C4479 | |||
|description=CAGE_peak_2_at_SGCD_5end | |||
|id=chr5:155754127..155754162,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.13e-30!180;CL:0000057!1.44e-18!75;CL:0002620!8.21e-12!23;CL:0000680!3.31e-10!57;CL:0000056!3.31e-10!57;CL:0000355!3.31e-10!57;CL:0000187!6.17e-09!54;CL:0000136!1.24e-08!15;CL:0000183!1.76e-07!59;CL:0000393!4.61e-07!60;CL:0000211!4.61e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.55e-12;23!CL:0000136;1.91e-08;13!CL:0000057;3.17e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.55e-18,76;CL:0002620,5.81e-12,23;CL:0000136,1.01e-09,15;CL:0000680,1.59e-07,58;CL:0000056,1.59e-07,58;CL:0000355,1.59e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!8.37e-18!365;UBERON:0000914!1.21e-17!83;UBERON:0002329!1.21e-17!83;UBERON:0003077!1.21e-17!83;UBERON:0003059!1.21e-17!83;UBERON:0007282!1.21e-17!83;UBERON:0009618!1.21e-17!83;UBERON:0007285!1.21e-17!83;UBERON:0007023!5.12e-17!115;UBERON:0004290!5.17e-15!70;UBERON:0002385!3.88e-13!63;UBERON:0001015!3.88e-13!63;UBERON:0000383!3.88e-13!63;UBERON:0001134!2.10e-12!61;UBERON:0002036!2.10e-12!61;UBERON:0003082!2.10e-12!61;UBERON:0003102!3.54e-12!95;UBERON:0000486!9.52e-12!82;UBERON:0002199!2.62e-11!45;UBERON:0002416!2.62e-11!45;UBERON:0002097!7.28e-10!40;UBERON:0005256!4.61e-09!143;UBERON:0000481!4.80e-08!347;UBERON:0000468!1.22e-07!659;UBERON:0000479!4.24e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;4.20e-12;31!UBERON:0001015;4.20e-12;31!UBERON:0000383;4.20e-12;31!UBERON:0001134;8.53e-10;16!UBERON:0002036;8.53e-10;16!UBERON:0002097;1.43e-08;41!UBERON:0002199;2.83e-08;46!UBERON:0002416;2.83e-08;46!UBERON:0001013;2.57e-07;14!UBERON:0002204;4.81e-07;70!UBERON:0002384;7.49e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,8.73e-13,73;UBERON:0003102,8.83e-13,99;UBERON:0002199,1.73e-12,46;UBERON:0002416,1.73e-12,46;UBERON:0003077,3.70e-12,72;UBERON:0007285,3.70e-12,72;UBERON:0002329,6.07e-12,71;UBERON:0003059,6.07e-12,71;UBERON:0007282,6.07e-12,71;UBERON:0004290,6.07e-12,71;UBERON:0009618,6.07e-12,71;UBERON:0007023,7.67e-11,114;UBERON:0002097,7.83e-11,41;UBERON:0002385,2.17e-10,64;UBERON:0001015,2.17e-10,64;UBERON:0000383,2.17e-10,64;UBERON:0001134,1.20e-09,62;UBERON:0002036,1.20e-09,62;UBERON:0003082,1.20e-09,62;UBERON:0007503,1.75e-09,78;UBERON:0000486,1.80e-09,83;UBERON:0000479,1.37e-07,773;UBERON:0001013,1.87e-07,14;UBERON:0005256,4.50e-07,122;UBERON:0010314,6.98e-07,132 | |||
|phase1_expression=8.3572054464456,8.56402095563933,6.90676580070259,11.0080628188443,3.5756887554183,3.48935409640147,7.59899634504932,3.79031924056099,2.08948502559871,0,0,0,0,2.22779435328084,0.994192127183747,2.01697543935533,4.82155622419182,1.46062018077475,1.95173119516203,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,2.04580098949649,15.9033227049209,6.51739283826656,9.84956328933601,20.6774346233286,18.4921250715002,0,0,0.087834785693126,1.89919659471683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,4.96971951695318,1.13967460498122,2.25095607382472,7.74458876021797,2.12801029319014,2.24271040056923,1.06748995729705,0.98667019366864,2.8008993185979,0.404132016209064,0.326923806226917,0.302714855289863,0,0.234321431833797,3.1216007683032,0.570471821544449,2.09228152772521,1.996386476944,2.42809416552197,2.24721290723598,6.94124182266637,2.94802361548243,9.91927499287348,13.0680314301026,19.0395535544489,0,0,4.88174730466792,2.00189631795143,4.43302584774693,9.65750765937843,11.9530240361618,13.8219014194069,1.02088964844019,37.1336545875944,48.2639698729962,36.4522869994446,22.5068322063302,21.4349260815953,20.0959621235591,26.2424767427542,65.8227695740938,22.5079481922369,22.7190396819703,48.9705460777033,6.46584227275248,66.7418033931235,41.8121207644707,6.27374191548804,0,0,0,0,0,0,0,0,0,12.5159625863853,10.2918550110862,4.14404764057442,3.71494342425583,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,3.2925920906512,1.47008711385542,0,0,2.36315962672562,0,0,0,0,0,0.100528972411631,0,0.651616610620649,1.03993478527958,0,0.463721619900307,0.234817388471643,0,0,0.380508304469197,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0.414656231081544,0,0.37872730027914,8.88970520090367,2.67391897890794,15.2382681373061,0,7.81488944545259,11.4130361980689,1.42913216315289,0.112131084345361,0.43596006883328,0.07333828582095,3.36106460970222,3.57656445851882,1.690605505112,3.72313363218819,2.08014873822732,0.514414748524284,0,0.266422179016099,3.86040582876998,0,0,1.62868092146868,3.909311436168,0,0.904318131178758,0,0.699810938274399,0,0,0,1.67737398844108,2.29723871668228,4.27910715122155,12.8855362934145,2.87666851570537,16.2945476548305,0,0,0,0,0,1.30139853857622,0,0,0.637938751653163,0,0,0,0.981531933753119,0,1.62759014219841,0.207970861530807,1.07057393278297,0,0.819989904948992,10.8340595901979,15.9185252839189,4.1389228517002,5.31380478828349,1.84369168541703,11.7292879531912,0,1.37257369524342,0,0,0,0,0,0.30239029332968,11.6610669674825,12.4304198363331,8.70046292742528,8.20090555236486,10.7458522304008,4.50390979202101,2.96836132889982,2.7757744884478,1.77561725313127,2.29956036838666,0,2.44041794765914,0,0,0,15.2703216058927,1.45672934405374,3.2781103739856,0,0,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33953315142039,3.84591752237042,6.93079799332939,0,0,3.21367859688319,13.5339005608971,1.23238893691716,1.5350367472613,2.20538515975249,4.0819693049944,2.90033387828457,2.13066568540252,19.8541439492224,0,0,0,0,0.464845549297286,14.4813679542094,4.1822236209636,0.308033580176089,0.532306030317022,6.08953094452551,2.03856641014312,0.286249773483982,0.744316738719335,2.21465597303108,0,1.535386747868,3.85145089230528,0.318203247925937,0,6.65528093058265,5.4907405947211,2.00281083987667,0.404364963146632,0,2.52755073743389,0.48763373908959,0.243713489631284,1.05650146756755,1.22849920267187,2.68670320712054,2.26016233240486,3.30819206127675,1.32687795048244,1.75380354101505,1.15755106853338,5.24715801637306,2.84074527747786,1.239293992399,3.09865162785466,0.717056761020258,0.294747123039363,2.85336841185,2.12856638442359,10.3442741295855,11.1960263606367,0.75894634753143,0.349934720244983,0.0962221127255121,0,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.8347699159725,0,0,0,0,0,0,0.994147647766298,1.26602474769461,0,0,0,8.76691148304707,1.10513566212459,0,0,0,79.3150948537609,0,0,0,4.43895325366201,2.3948309234694,0,0.969332746095218,1.39152147242777,0,0,0,1.44999915086959,0,0,0,0,0,4.16699987839901,1.77148277162768,0.241192877250816,0,1.99042667876204,1.77328571372128,0.658156191461918,0,0,5.2326175782582,0.569710279235006,0,0,0,0.31900115973192,0.732780747214898,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,2.56526937059684,3.66618086960175,0,0,0,4.65067817566672,28.0902176554576,1.40558667435203,0,0,0,3.94584402849391,3.62972148145992,0.91821828489147,7.01371033876216,0,0,0,0,0,0,0,0.138674673013139,0,0,0,3.31980669659857,3.43972064943233,0,0,0,5.14041787388623,0,5.87549926029384,0,0,1.96263467463224,0,0,4.90941887900511,0,0,0,0,0,0,0,5.8438808611654,5.02093662299199,0,1.44475294950759,1.20084057741958,2.46429682005587,0,1.71906176567983,0,8.37847203816763,20.3952777370398,0.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| ||
|short_description=p2@SGCD | |||
}} | }} |
Latest revision as of 12:49, 16 September 2015
Short description: | p2@SGCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SGCD_5end |
Coexpression cluster: | C4479_Fibroblast_basal_normal_Chondrocyte_heart_diaphragm_tongue |
Association with transcript: | 169bp_to_ENST00000524347_5end |
EntrezGene: | SGCD |
HGNC: | 10807 |
UniProt: | E5RI34 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.55e-18 | 76 |
skin fibroblast | 5.81e-12 | 23 |
fat cell | 1.01e-09 | 15 |
muscle precursor cell | 1.59e-07 | 58 |
myoblast | 1.59e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.59e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 8.73e-13 | 73 |
surface structure | 8.83e-13 | 99 |
integument | 1.73e-12 | 46 |
integumental system | 1.73e-12 | 46 |
paraxial mesoderm | 3.70e-12 | 72 |
presumptive paraxial mesoderm | 3.70e-12 | 72 |
somite | 6.07e-12 | 71 |
presomitic mesoderm | 6.07e-12 | 71 |
presumptive segmental plate | 6.07e-12 | 71 |
dermomyotome | 6.07e-12 | 71 |
trunk paraxial mesoderm | 6.07e-12 | 71 |
adult organism | 7.67e-11 | 114 |
skin of body | 7.83e-11 | 41 |
muscle tissue | 2.17e-10 | 64 |
musculature | 2.17e-10 | 64 |
musculature of body | 2.17e-10 | 64 |
skeletal muscle tissue | 1.20e-09 | 62 |
striated muscle tissue | 1.20e-09 | 62 |
myotome | 1.20e-09 | 62 |
epithelial vesicle | 1.75e-09 | 78 |
multilaminar epithelium | 1.80e-09 | 83 |
tissue | 1.37e-07 | 773 |
adipose tissue | 1.87e-07 | 14 |
trunk mesenchyme | 4.50e-07 | 122 |
structure with developmental contribution from neural crest | 6.98e-07 | 132 |