FFCP PHASE1:Hg19::chr10:115939008..115939073,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56165 | |EntrezGene=56165 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11712 | |HGNC=11712 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BXT4,B7WPM2,C9JRE4 | |UniProt=Q9BXT4,B7WPM2,C9JRE4 | ||
|association_with_transcript=0bp_to_ENST00000251864,ENST00000369281,ENST00000369282,ENST00000422662,NM_198795,uc001lbf.2,uc001lbg.1,uc001lbh.1_5end | |association_with_transcript=0bp_to_ENST00000251864,ENST00000369281,ENST00000369282,ENST00000422662,NM_198795,uc001lbf.2,uc001lbg.1,uc001lbh.1_5end | ||
|cluster_id=chr10:115939008..115939073,+ | |||
|coexpression_cluster_id=C2981 | |||
|description=CAGE_peak_1_at_TDRD1_5end | |description=CAGE_peak_1_at_TDRD1_5end | ||
|id=chr10:115939008..115939073,+ | |id=chr10:115939008..115939073,+ | ||
|ontology_enrichment_celltype=CL:0002556!3.92e-07!6;CL:0002552!4.05e-07!5 | |ontology_enrichment_celltype=CL:0002556!3.92e-07!6;CL:0002552!4.05e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002561;6.56e-11;2!CL:0002559;2.10e-09;5!CL:0002552;2.10e-09;5!CL:0000362;7.39e-09;9!CL:0000784;2.42e-07;3!CL:0000039;3.89e-07;7!CL:0000586;3.89e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002561,4.75e-11,2;CL:0002559,1.72e-09,5;CL:0002552,3.35e-09,5;CL:0000362,5.82e-09,9;CL:0000784,2.06e-07,3;CL:0000039,3.62e-07,7;CL:0000586,3.62e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.00e-13;10!UBERON:0005564;7.00e-13;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;1.04e-11;4!DOID:1612;1.04e-11;4!DOID:0050619;9.89e-07;1!DOID:1357;9.89e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,6.13e-12,4;DOID:1612,6.13e-12,4;DOID:0050619,9.91e-07,1;DOID:1357,9.91e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.75e-19!115;UBERON:0000153!2.15e-11!129;UBERON:0007811!2.15e-11!129;UBERON:0002616!5.33e-11!59;UBERON:0004121!5.46e-11!169;UBERON:0000924!2.41e-10!173;UBERON:0006601!2.41e-10!173;UBERON:0000033!4.18e-10!123;UBERON:0001049!4.35e-10!57;UBERON:0005068!4.35e-10!57;UBERON:0006241!4.35e-10!57;UBERON:0007135!4.35e-10!57;UBERON:0002780!1.22e-09!41;UBERON:0001890!1.22e-09!41;UBERON:0006240!1.22e-09!41;UBERON:0001869!1.73e-09!32;UBERON:0003080!2.97e-09!42;UBERON:0000955!1.13e-08!69;UBERON:0006238!1.13e-08!69;UBERON:0001893!1.30e-08!34;UBERON:0001017!1.34e-08!82;UBERON:0002020!1.42e-08!34;UBERON:0003528!1.42e-08!34;UBERON:0002791!5.99e-08!33;UBERON:0002619!8.15e-08!22;UBERON:0005743!9.11e-08!86;UBERON:0000956!2.52e-07!25;UBERON:0000203!2.52e-07!25;UBERON:0001758!3.92e-07!6;UBERON:0003672!3.92e-07!6;UBERON:0003075!5.53e-07!86;UBERON:0007284!5.53e-07!86;UBERON:0000073!8.30e-07!94;UBERON:0001016!8.30e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.59e-16;8!UBERON:0003135;1.10e-11;11!UBERON:0005933;6.56e-11;2!UBERON:0005942;6.56e-11;2!UBERON:0005932;6.56e-11;2!UBERON:0001828;4.19e-10;8!UBERON:0002073;2.10e-09;5!UBERON:0001003;6.50e-08;15!UBERON:0007376;6.50e-08;15!UBERON:0003101;7.57e-08;22!UBERON:0000079;7.57e-08;22!UBERON:0001764;9.89e-07;1!UBERON:0001825;9.89e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.24e-16,8;UBERON:0003135,1.03e-11,11;UBERON:0005933,4.75e-11,2;UBERON:0005942,4.75e-11,2;UBERON:0005932,4.75e-11,2;UBERON:0001828,6.16e-10,8;UBERON:0002073,1.72e-09,5;UBERON:0005086,1.72e-09,5;UBERON:0001003,5.43e-08,15;UBERON:0007376,5.43e-08,15;UBERON:0007383,5.43e-08,15;UBERON:0003102,7.88e-08,99;UBERON:0003101,8.49e-08,22;UBERON:0000079,8.49e-08,22;UBERON:0004923,8.45e-07,66;UBERON:0001764,9.91e-07,1;UBERON:0001825,9.91e-07,1 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,0,0,0,0,0.261185628199839,0,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0.263384084775077,0.393419540227666,0,0.205601498999509,1.33749196312542,0.32592226663359,0,0,0.222820913770347,0.294605907474837,0,0.812411591295047,0,0.130059347559878,0.164437904603676,0,0.579606171470105,1.18629250529648,0,0,0.339928028092699,0.383220493601921,0,0.759059076058509,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,7.66227591661619,0,0,0,0,0,1.90792499444274,1.14398982156026,0,0,1.72046919021225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,3.44263870114369,0.286836620748814,0,0,0,0,0,0,0,0.151357427644931,0,0,5.61888138294577,1.71141546463335,0,0,0,0,2.04154171254893,0.491337269247072,1.03325781175765,1.18800285728205,0.989067717114227,0,0,0.841680569770331,0.250237039743928,0.277064115484183,0.438977620880838,0.919463387397059,1.35214253015937,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,2.29443676311203,0.487894824518382,0.397589304964456,0.232387885739037,0.414644220061482,0.252320850875628,0,0,1.28648187638577,0,2.3218396401599,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,1.03993478527958,0,0,0,0,0,0,1.58040879591855,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0.224262168690721,1.74384027533312,0.36669142910475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0.179060963239896,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0.813795071099207,0,0.713715955188647,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0.303127571446259,0,0,0,0,0,0.128139149255701,0,0,0,0,0.355123450626254,0.164254312027618,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,1.14853107599234,0,0,0,0.616194468458578,0.614014698904518,0.137836572484531,0,0,0.340906509664404,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0,0.372158369359667,0,0.38126038784765,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0.354761064070598,0.211107635297664,0,0,0,0.288666338176536,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,1.19372242368845,1.18785872333055,0.307160702099232,0,0,0,0,0,0.796991953004279,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.556608588971108,0,6.77112178821606,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0.295547618953547,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821425535170343,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0.451961481561065,0,0,0.50648636764703,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,1.11712960508902,0.687481272035051,0,0.199679000498991,0.858452096273142,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0.415440338029185,0,0,0.242998226632099,7.37956312718385,0.236417121897595,0,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,6.79872549120754,0.146552233678082,0,0.387848869084652,0,0,0,0.427149650270779,0,0,0,0,0,0,0,0,0,0,37.8500371963065,0,0.610131324509816,0.250381861413,0,0.110929051536852,0.124192805882767,0,0,0,0,0,1.87333962322753,0,0.597019211547496,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0.0642292250964595,1.41696576325585,1.11743701340006,0.82046545696302,0,0.276629009856872,0.322951291263702,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0.540300676947157,0,1.2401207790071,0.570742291745161,0,0,0,0,0,0,0.336283722218824,0.606965604236632,0.227662191351298,0,0,0,0.271878931907327,0.263091094251396,0,0,1.02041020705668,0,0,0,12.0919451082428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0.981542335574726,0,0,0,0.657887425858975,0.322289439867886,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.305966489225945,10.4214788053569,1.37842349302267,26.5749991649918,22.9609455601265,30.5479108378043,0,0.103432995861895,0,0.476128862927481,0.129177819672012,0.248298857183432,0,0.12729431655633,0.404234377916439,0.217716747896961,0.342233301085281,0.134704106029175,0.932388670104793,0.665320713092027,0,0,0,0,0,0.244482888365733,1.22068853494722,0,0,0 | |phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,0,0,0,0,0.261185628199839,0,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0.263384084775077,0.393419540227666,0,0.205601498999509,1.33749196312542,0.32592226663359,0,0,0.222820913770347,0.294605907474837,0,0.812411591295047,0,0.130059347559878,0.164437904603676,0,0.579606171470105,1.18629250529648,0,0,0.339928028092699,0.383220493601921,0,0.759059076058509,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,7.66227591661619,0,0,0,0,0,1.90792499444274,1.14398982156026,0,0,1.72046919021225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,3.44263870114369,0.286836620748814,0,0,0,0,0,0,0,0.151357427644931,0,0,5.61888138294577,1.71141546463335,0,0,0,0,2.04154171254893,0.491337269247072,1.03325781175765,1.18800285728205,0.989067717114227,0,0,0.841680569770331,0.250237039743928,0.277064115484183,0.438977620880838,0.919463387397059,1.35214253015937,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,2.29443676311203,0.487894824518382,0.397589304964456,0.232387885739037,0.414644220061482,0.252320850875628,0,0,1.28648187638577,0,2.3218396401599,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,1.03993478527958,0,0,0,0,0,0,1.58040879591855,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0.224262168690721,1.74384027533312,0.36669142910475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0.179060963239896,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0.813795071099207,0,0.713715955188647,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0.303127571446259,0,0,0,0,0,0.128139149255701,0,0,0,0,0.355123450626254,0.164254312027618,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,1.14853107599234,0,0,0,0.616194468458578,0.614014698904518,0.137836572484531,0,0,0.340906509664404,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0,0.372158369359667,0,0.38126038784765,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0.354761064070598,0.211107635297664,0,0,0,0.288666338176536,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,1.19372242368845,1.18785872333055,0.307160702099232,0,0,0,0,0,0.796991953004279,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.556608588971108,0,6.77112178821606,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0.295547618953547,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821425535170343,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0.451961481561065,0,0,0.50648636764703,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,1.11712960508902,0.687481272035051,0,0.199679000498991,0.858452096273142,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0.415440338029185,0,0,0.242998226632099,7.37956312718385,0.236417121897595,0,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,6.79872549120754,0.146552233678082,0,0.387848869084652,0,0,0,0.427149650270779,0,0,0,0,0,0,0,0,0,0,37.8500371963065,0,0.610131324509816,0.250381861413,0,0.110929051536852,0.124192805882767,0,0,0,0,0,1.87333962322753,0,0.597019211547496,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0.0642292250964595,1.41696576325585,1.11743701340006,0.82046545696302,0,0.276629009856872,0.322951291263702,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0.540300676947157,0,1.2401207790071,0.570742291745161,0,0,0,0,0,0,0.336283722218824,0.606965604236632,0.227662191351298,0,0,0,0.271878931907327,0.263091094251396,0,0,1.02041020705668,0,0,0,12.0919451082428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0.981542335574726,0,0,0,0.657887425858975,0.322289439867886,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.305966489225945,10.4214788053569,1.37842349302267,26.5749991649918,22.9609455601265,30.5479108378043,0,0.103432995861895,0,0.476128862927481,0.129177819672012,0.248298857183432,0,0.12729431655633,0.404234377916439,0.217716747896961,0.342233301085281,0.134704106029175,0.932388670104793,0.665320713092027,0,0,0,0,0,0.244482888365733,1.22068853494722,0,0,0 | ||
|short_description=p1@TDRD1 | |short_description=p1@TDRD1 | ||
}} | }} |
Latest revision as of 12:24, 16 September 2015
Short description: | p1@TDRD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TDRD1_5end |
Coexpression cluster: | C2981_maxillary_testicular_testis_renal_keratoacanthoma_liposarcoma_breast |
Association with transcript: | 0bp_to_ENST00000251864, ENST00000369281, ENST00000369282, ENST00000422662, NM_198795, uc001lbf.2, uc001lbg.1, uc001lbh.1_5end |
EntrezGene: | TDRD1 |
HGNC: | 11712 |
UniProt: | Q9BXT4B7WPM2C9JRE4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
outer root sheath cell | 4.75e-11 | 2 |
hair follicle cell | 1.72e-09 | 5 |
fibroblast of gingiva | 3.35e-09 | 5 |
epidermal cell | 5.82e-09 | 9 |
plasmacytoid dendritic cell | 2.06e-07 | 3 |
germ line cell | 3.62e-07 | 7 |
germ cell | 3.62e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 3.24e-16 | 8 |
male reproductive organ | 1.03e-11 | 11 |
hair root sheath | 4.75e-11 | 2 |
hair outer root sheath | 4.75e-11 | 2 |
bulb of hair follicle | 4.75e-11 | 2 |
gingiva | 6.16e-10 | 8 |
hair follicle | 1.72e-09 | 5 |
hair follicle placode | 1.72e-09 | 5 |
skin epidermis | 5.43e-08 | 15 |
outer epithelium | 5.43e-08 | 15 |
enveloping layer of ectoderm | 5.43e-08 | 15 |
surface structure | 7.88e-08 | 99 |
male organism | 8.49e-08 | 22 |
male reproductive system | 8.49e-08 | 22 |
organ component layer | 8.45e-07 | 66 |
maxillary sinus | 9.91e-07 | 1 |
paranasal sinus | 9.91e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 6.13e-12 | 4 |
breast cancer | 6.13e-12 | 4 |
paranasal sinus cancer | 9.91e-07 | 1 |
maxillary sinus cancer | 9.91e-07 | 1 |