FFCP PHASE1:Hg19::chr11:124543784..124543824,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=53340 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11210 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000529498_5end | |||
|cluster_id=chr11:124543784..124543824,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_SPA17_5end | |||
|id=chr11:124543784..124543824,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.02e-15!180;CL:0000220!3.94e-08!246;CL:0000187!7.06e-08!54;CL:0002321!7.47e-08!248;CL:0000680!1.05e-07!57;CL:0000056!1.05e-07!57;CL:0000355!1.05e-07!57;CL:0000057!1.61e-07!75;CL:0000393!2.39e-07!60;CL:0000211!2.39e-07!60;CL:0000183!5.24e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.70e-08,250;CL:0000187,1.44e-07,55;CL:0000057,2.01e-07,76;CL:0000680,2.05e-07,58;CL:0000056,2.05e-07,58;CL:0000355,2.05e-07,58;CL:0000393,4.47e-07,61;CL:0000211,4.47e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.11e-07!239;DOID:162!2.35e-07!235;DOID:0050687!3.95e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.14e-07,239;DOID:162,2.42e-07,235;DOID:0050687,4.11e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000475!2.89e-18!365;UBERON:0000481!3.31e-17!347;UBERON:0000119!9.21e-15!312;UBERON:0000483!2.39e-14!309;UBERON:0002100!1.00e-09!216;UBERON:0000914!2.61e-09!83;UBERON:0002329!2.61e-09!83;UBERON:0003077!2.61e-09!83;UBERON:0003059!2.61e-09!83;UBERON:0007282!2.61e-09!83;UBERON:0009618!2.61e-09!83;UBERON:0007285!2.61e-09!83;UBERON:0003104!9.79e-09!238;UBERON:0009142!9.79e-09!238;UBERON:0000477!2.26e-08!286;UBERON:0005256!5.55e-08!143;UBERON:0000486!6.11e-08!82;UBERON:0000033!1.47e-07!123;UBERON:0000468!3.72e-07!659;UBERON:0004290!4.27e-07!70;UBERON:0000153!6.95e-07!129;UBERON:0007811!6.95e-07!129 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,5.45e-14,309;UBERON:0000483,1.38e-13,306;UBERON:0010314,3.67e-09,132;UBERON:0002100,8.25e-08,199;UBERON:0000486,1.05e-07,83;UBERON:0007524,3.58e-07,73;UBERON:0003077,5.97e-07,72;UBERON:0007285,5.97e-07,72;UBERON:0000025,6.91e-07,192;UBERON:0002329,7.42e-07,71;UBERON:0003059,7.42e-07,71;UBERON:0007282,7.42e-07,71;UBERON:0004290,7.42e-07,71;UBERON:0009618,7.42e-07,71 | |||
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| |||
|short_description=p1@SPA17 | |||
}} |
Latest revision as of 11:28, 16 September 2015
Short description: | p1@SPA17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPA17_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000529498_5end |
EntrezGene: | SPA17 |
HGNC: | 11210 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.70e-08 | 250 |
muscle cell | 1.44e-07 | 55 |
fibroblast | 2.01e-07 | 76 |
muscle precursor cell | 2.05e-07 | 58 |
myoblast | 2.05e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.05e-07 | 58 |
electrically responsive cell | 4.47e-07 | 61 |
electrically active cell | 4.47e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell layer | 5.45e-14 | 309 |
epithelium | 1.38e-13 | 306 |
structure with developmental contribution from neural crest | 3.67e-09 | 132 |
trunk | 8.25e-08 | 199 |
multilaminar epithelium | 1.05e-07 | 83 |
dense mesenchyme tissue | 3.58e-07 | 73 |
paraxial mesoderm | 5.97e-07 | 72 |
presumptive paraxial mesoderm | 5.97e-07 | 72 |
tube | 6.91e-07 | 192 |
somite | 7.42e-07 | 71 |
presomitic mesoderm | 7.42e-07 | 71 |
presumptive segmental plate | 7.42e-07 | 71 |
dermomyotome | 7.42e-07 | 71 |
trunk paraxial mesoderm | 7.42e-07 | 71 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.14e-07 | 239 |
cancer | 2.42e-07 | 235 |
cell type cancer | 4.11e-07 | 143 |