FFCP PHASE1:Hg19::chr11:12399071..12399185,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55742 | |EntrezGene=55742 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14652 | |HGNC=14652 | ||
|TSSclassifier=strong | |||
|UniProt=F5H1R9,Q9NVD7 | |UniProt=F5H1R9,Q9NVD7 | ||
|association_with_transcript=0bp_to_ENST00000530755,ENST00000539723,ENST00000550549,uc001mkh.2,uc001mki.2_5end | |association_with_transcript=0bp_to_ENST00000530755,ENST00000539723,ENST00000550549,uc001mkh.2,uc001mki.2_5end | ||
|cluster_id=chr11:12399071..12399185,+ | |||
|coexpression_cluster_id=C3110 | |coexpression_cluster_id=C3110 | ||
|description=CAGE_peak_1_at_PARVA_5end | |description=CAGE_peak_1_at_PARVA_5end | ||
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|ontology_enrichment_celltype=CL:0000055!4.55e-36!180;CL:0000222!1.10e-21!119;CL:0000057!7.64e-19!75;CL:0000680!6.96e-17!57;CL:0000056!6.96e-17!57;CL:0000355!6.96e-17!57;CL:0000183!1.55e-16!59;CL:0000187!2.80e-16!54;CL:0000220!1.47e-15!246;CL:0002321!4.18e-15!248;CL:0000192!3.01e-14!42;CL:0000514!3.01e-14!42;CL:0000393!4.35e-13!60;CL:0000211!4.35e-13!60;CL:0000359!1.76e-11!32;CL:0000136!1.01e-09!15;CL:0002620!1.50e-07!23;CL:0000325!3.03e-07!39 | |ontology_enrichment_celltype=CL:0000055!4.55e-36!180;CL:0000222!1.10e-21!119;CL:0000057!7.64e-19!75;CL:0000680!6.96e-17!57;CL:0000056!6.96e-17!57;CL:0000355!6.96e-17!57;CL:0000183!1.55e-16!59;CL:0000187!2.80e-16!54;CL:0000220!1.47e-15!246;CL:0002321!4.18e-15!248;CL:0000192!3.01e-14!42;CL:0000514!3.01e-14!42;CL:0000393!4.35e-13!60;CL:0000211!4.35e-13!60;CL:0000359!1.76e-11!32;CL:0000136!1.01e-09!15;CL:0002620!1.50e-07!23;CL:0000325!3.03e-07!39 | ||
|ontology_enrichment_celltype_v019=CL:0000359;7.23e-11;32!CL:0000192;2.25e-10;43!CL:0000187;2.48e-09;55!CL:0000136;8.15e-09;13!CL:0000057;2.10e-08;73!CL:0002620;1.43e-07;23!CL:0000393;2.76e-07;61!CL:0000211;2.76e-07;61!CL:0002320;7.68e-07;188 | |ontology_enrichment_celltype_v019=CL:0000359;7.23e-11;32!CL:0000192;2.25e-10;43!CL:0000187;2.48e-09;55!CL:0000136;8.15e-09;13!CL:0000057;2.10e-08;73!CL:0002620;1.43e-07;23!CL:0000393;2.76e-07;61!CL:0000211;2.76e-07;61!CL:0002320;7.68e-07;188 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.94e-22,121;CL:0000057,1.55e-19,76;CL:0000680,3.60e-17,58;CL:0000056,3.60e-17,58;CL:0000355,3.60e-17,58;CL:0000187,1.46e-16,55;CL:0002321,1.45e-15,250;CL:0000192,1.63e-14,43;CL:0000514,1.63e-14,43;CL:0000393,2.33e-13,61;CL:0000211,2.33e-13,61;CL:0000359,1.60e-11,32;CL:0000136,9.35e-10,15;CL:0002620,1.42e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;2.25e-10;43!CL:0000355;2.14e-09;58 | |ontology_enrichment_development_v019=CL:0000514;2.25e-10;43!CL:0000355;2.14e-09;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!5.60e-21!143;UBERON:0002049!4.43e-20!79;UBERON:0007798!4.43e-20!79;UBERON:0000914!3.59e-19!83;UBERON:0002329!3.59e-19!83;UBERON:0003077!3.59e-19!83;UBERON:0003059!3.59e-19!83;UBERON:0007282!3.59e-19!83;UBERON:0009618!3.59e-19!83;UBERON:0007285!3.59e-19!83;UBERON:0004872!6.66e-19!84;UBERON:0000475!6.87e-19!365;UBERON:0002100!8.13e-19!216;UBERON:0003914!1.58e-17!118;UBERON:0004290!2.06e-17!70;UBERON:0000055!1.76e-16!69;UBERON:0002385!2.37e-16!63;UBERON:0001015!2.37e-16!63;UBERON:0000383!2.37e-16!63;UBERON:0001981!3.06e-16!60;UBERON:0007500!3.06e-16!60;UBERON:0004537!3.06e-16!60;UBERON:0006965!3.06e-16!60;UBERON:0000486!5.06e-16!82;UBERON:0001134!6.21e-16!61;UBERON:0002036!6.21e-16!61;UBERON:0003082!6.21e-16!61;UBERON:0000490!1.01e-15!138;UBERON:0000481!1.08e-14!347;UBERON:0001009!1.93e-14!113;UBERON:0003104!4.26e-14!238;UBERON:0009142!4.26e-14!238;UBERON:0004535!5.85e-14!110;UBERON:0000119!2.48e-13!312;UBERON:0000483!9.02e-13!309;UBERON:0001637!1.28e-12!42;UBERON:0003509!1.28e-12!42;UBERON:0004572!1.28e-12!42;UBERON:0000468!4.24e-12!659;UBERON:0000477!7.16e-12!286;UBERON:0003102!5.53e-10!95;UBERON:0004573!7.01e-10!33;UBERON:0004571!7.01e-10!33;UBERON:0004111!1.07e-09!241;UBERON:0000467!2.70e-09!625;UBERON:0000480!4.86e-09!626;UBERON:0002199!3.05e-08!45;UBERON:0002416!3.05e-08!45;UBERON:0007100!2.41e-07!27;UBERON:0000948!6.02e-07!24;UBERON:0005498!6.02e-07!24;UBERON:0004140!6.02e-07!24;UBERON:0009881!6.02e-07!24;UBERON:0004141!6.02e-07!24;UBERON:0003084!6.02e-07!24;UBERON:0007005!6.02e-07!24;UBERON:0004139!6.02e-07!24;UBERON:0004291!6.02e-07!24;UBERON:0000025!7.12e-07!194;UBERON:0002097!8.98e-07!40;UBERON:0000947!9.07e-07!21;UBERON:0010191!9.07e-07!21 | |ontology_enrichment_uberon=UBERON:0005256!5.60e-21!143;UBERON:0002049!4.43e-20!79;UBERON:0007798!4.43e-20!79;UBERON:0000914!3.59e-19!83;UBERON:0002329!3.59e-19!83;UBERON:0003077!3.59e-19!83;UBERON:0003059!3.59e-19!83;UBERON:0007282!3.59e-19!83;UBERON:0009618!3.59e-19!83;UBERON:0007285!3.59e-19!83;UBERON:0004872!6.66e-19!84;UBERON:0000475!6.87e-19!365;UBERON:0002100!8.13e-19!216;UBERON:0003914!1.58e-17!118;UBERON:0004290!2.06e-17!70;UBERON:0000055!1.76e-16!69;UBERON:0002385!2.37e-16!63;UBERON:0001015!2.37e-16!63;UBERON:0000383!2.37e-16!63;UBERON:0001981!3.06e-16!60;UBERON:0007500!3.06e-16!60;UBERON:0004537!3.06e-16!60;UBERON:0006965!3.06e-16!60;UBERON:0000486!5.06e-16!82;UBERON:0001134!6.21e-16!61;UBERON:0002036!6.21e-16!61;UBERON:0003082!6.21e-16!61;UBERON:0000490!1.01e-15!138;UBERON:0000481!1.08e-14!347;UBERON:0001009!1.93e-14!113;UBERON:0003104!4.26e-14!238;UBERON:0009142!4.26e-14!238;UBERON:0004535!5.85e-14!110;UBERON:0000119!2.48e-13!312;UBERON:0000483!9.02e-13!309;UBERON:0001637!1.28e-12!42;UBERON:0003509!1.28e-12!42;UBERON:0004572!1.28e-12!42;UBERON:0000468!4.24e-12!659;UBERON:0000477!7.16e-12!286;UBERON:0003102!5.53e-10!95;UBERON:0004573!7.01e-10!33;UBERON:0004571!7.01e-10!33;UBERON:0004111!1.07e-09!241;UBERON:0000467!2.70e-09!625;UBERON:0000480!4.86e-09!626;UBERON:0002199!3.05e-08!45;UBERON:0002416!3.05e-08!45;UBERON:0007100!2.41e-07!27;UBERON:0000948!6.02e-07!24;UBERON:0005498!6.02e-07!24;UBERON:0004140!6.02e-07!24;UBERON:0009881!6.02e-07!24;UBERON:0004141!6.02e-07!24;UBERON:0003084!6.02e-07!24;UBERON:0007005!6.02e-07!24;UBERON:0004139!6.02e-07!24;UBERON:0004291!6.02e-07!24;UBERON:0000025!7.12e-07!194;UBERON:0002097!8.98e-07!40;UBERON:0000947!9.07e-07!21;UBERON:0010191!9.07e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.23e-09;42!UBERON:0003509;3.23e-09;42!UBERON:0004572;3.23e-09;42!UBERON:0004573;4.11e-09;33!UBERON:0004571;4.11e-09;33!UBERON:0007500;1.27e-08;56!UBERON:0001981;1.27e-08;56!UBERON:0004537;1.27e-08;56!UBERON:0002049;7.52e-08;75!UBERON:0007798;7.52e-08;75!UBERON:0000055;1.63e-07;65!UBERON:0002384;2.42e-07;198!UBERON:0007100;5.94e-07;25!UBERON:0000947;8.25e-07;21!UBERON:0010191;8.25e-07;21 | |ontology_enrichment_uberon_v019=UBERON:0001637;3.23e-09;42!UBERON:0003509;3.23e-09;42!UBERON:0004572;3.23e-09;42!UBERON:0004573;4.11e-09;33!UBERON:0004571;4.11e-09;33!UBERON:0007500;1.27e-08;56!UBERON:0001981;1.27e-08;56!UBERON:0004537;1.27e-08;56!UBERON:0002049;7.52e-08;75!UBERON:0007798;7.52e-08;75!UBERON:0000055;1.63e-07;65!UBERON:0002384;2.42e-07;198!UBERON:0007100;5.94e-07;25!UBERON:0000947;8.25e-07;21!UBERON:0010191;8.25e-07;21 | ||
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| ||
|short_description=p1@PARVA | |short_description=p1@PARVA | ||
}} | }} |
Latest revision as of 10:57, 16 September 2015
Short description: | p1@PARVA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PARVA_5end |
Coexpression cluster: | C3110_spindle_mesodermal_bone_Preadipocyte_basal_Sertoli_mesenchymal |
Association with transcript: | 0bp_to_ENST00000530755, ENST00000539723, ENST00000550549, uc001mkh.2, uc001mki.2_5end |
EntrezGene: | PARVA |
HGNC: | 14652 |
UniProt: | F5H1R9Q9NVD7 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.94e-22 | 121 |
fibroblast | 1.55e-19 | 76 |
muscle precursor cell | 3.60e-17 | 58 |
myoblast | 3.60e-17 | 58 |
multi-potent skeletal muscle stem cell | 3.60e-17 | 58 |
muscle cell | 1.46e-16 | 55 |
embryonic cell | 1.45e-15 | 250 |
smooth muscle cell | 1.63e-14 | 43 |
smooth muscle myoblast | 1.63e-14 | 43 |
electrically responsive cell | 2.33e-13 | 61 |
electrically active cell | 2.33e-13 | 61 |
vascular associated smooth muscle cell | 1.60e-11 | 32 |
fat cell | 9.35e-10 | 15 |
skin fibroblast | 1.42e-07 | 23 |