FFCP PHASE1:Hg19::chr7:131195895..131195931,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5420 | |EntrezGene=5420 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9171 | |HGNC=9171 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-238bp_to_ENST00000482581_5end | |association_with_transcript=-238bp_to_ENST00000482581_5end | ||
|cluster_id=chr7:131195895..131195931,- | |||
|coexpression_cluster_id=C957 | |coexpression_cluster_id=C957 | ||
|description=CAGE_peak_5_at_PODXL_5end | |description=CAGE_peak_5_at_PODXL_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002139!1.83e-07!24;CL:0000213!4.66e-07!57;CL:0000215!4.66e-07!57 | |ontology_enrichment_celltype=CL:0002139!1.83e-07!24;CL:0000213!4.66e-07!57;CL:0000215!4.66e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.76e-07;5!CL:0002139;8.20e-07;24 | |ontology_enrichment_celltype_v019=CL:0002322;1.76e-07;5!CL:0002139;8.20e-07;24 | ||
|ontology_enrichment_celltype_v019_2=CL:0000213,6.04e-08,58;CL:0000215,6.04e-08,58;CL:0002322,1.77e-07,5;CL:0002139,5.16e-07,24 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.83e-15!86;UBERON:0007023!4.35e-15!115;UBERON:0001017!6.40e-15!82;UBERON:0001049!3.89e-14!57;UBERON:0005068!3.89e-14!57;UBERON:0006241!3.89e-14!57;UBERON:0007135!3.89e-14!57;UBERON:0000073!5.93e-14!94;UBERON:0001016!5.93e-14!94;UBERON:0003075!1.22e-13!86;UBERON:0007284!1.22e-13!86;UBERON:0002346!7.91e-13!90;UBERON:0002780!1.32e-12!41;UBERON:0001890!1.32e-12!41;UBERON:0006240!1.32e-12!41;UBERON:0003080!6.35e-12!42;UBERON:0002020!1.10e-11!34;UBERON:0003528!1.10e-11!34;UBERON:0000955!4.79e-11!69;UBERON:0006238!4.79e-11!69;UBERON:0002791!7.43e-11!33;UBERON:0002616!2.05e-10!59;UBERON:0001893!3.69e-10!34;UBERON:0001869!6.16e-10!32;UBERON:0003056!1.98e-09!61;UBERON:0000956!3.62e-09!25;UBERON:0000203!3.62e-09!25;UBERON:0000468!2.61e-08!659;UBERON:0000064!3.52e-08!219;UBERON:0002619!5.58e-08!22;UBERON:0004121!5.66e-08!169;UBERON:0000924!1.14e-07!173;UBERON:0006601!1.14e-07!173;UBERON:0000025!1.85e-07!194;UBERON:0000477!1.88e-07!286;UBERON:0004111!2.84e-07!241;UBERON:0001950!4.26e-07!20 | |ontology_enrichment_uberon=UBERON:0005743!2.83e-15!86;UBERON:0007023!4.35e-15!115;UBERON:0001017!6.40e-15!82;UBERON:0001049!3.89e-14!57;UBERON:0005068!3.89e-14!57;UBERON:0006241!3.89e-14!57;UBERON:0007135!3.89e-14!57;UBERON:0000073!5.93e-14!94;UBERON:0001016!5.93e-14!94;UBERON:0003075!1.22e-13!86;UBERON:0007284!1.22e-13!86;UBERON:0002346!7.91e-13!90;UBERON:0002780!1.32e-12!41;UBERON:0001890!1.32e-12!41;UBERON:0006240!1.32e-12!41;UBERON:0003080!6.35e-12!42;UBERON:0002020!1.10e-11!34;UBERON:0003528!1.10e-11!34;UBERON:0000955!4.79e-11!69;UBERON:0006238!4.79e-11!69;UBERON:0002791!7.43e-11!33;UBERON:0002616!2.05e-10!59;UBERON:0001893!3.69e-10!34;UBERON:0001869!6.16e-10!32;UBERON:0003056!1.98e-09!61;UBERON:0000956!3.62e-09!25;UBERON:0000203!3.62e-09!25;UBERON:0000468!2.61e-08!659;UBERON:0000064!3.52e-08!219;UBERON:0002619!5.58e-08!22;UBERON:0004121!5.66e-08!169;UBERON:0000924!1.14e-07!173;UBERON:0006601!1.14e-07!173;UBERON:0000025!1.85e-07!194;UBERON:0000477!1.88e-07!286;UBERON:0004111!2.84e-07!241;UBERON:0001950!4.26e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0002791;2.21e-10;32!UBERON:0003528;5.13e-10;34!UBERON:0002020;5.13e-10;34!UBERON:0002780;6.29e-10;41!UBERON:0001890;6.29e-10;41!UBERON:0001869;1.46e-09;32!UBERON:0000956;4.90e-09;25!UBERON:0000203;4.90e-09;25!UBERON:0001893;2.28e-08;34!UBERON:0002619;3.89e-08;22!UBERON:0000073;1.22e-07;53!UBERON:0002616;1.22e-07;53!UBERON:0000922;4.81e-07;49!UBERON:0001950;7.02e-07;20 | |ontology_enrichment_uberon_v019=UBERON:0002791;2.21e-10;32!UBERON:0003528;5.13e-10;34!UBERON:0002020;5.13e-10;34!UBERON:0002780;6.29e-10;41!UBERON:0001890;6.29e-10;41!UBERON:0001869;1.46e-09;32!UBERON:0000956;4.90e-09;25!UBERON:0000203;4.90e-09;25!UBERON:0001893;2.28e-08;34!UBERON:0002619;3.89e-08;22!UBERON:0000073;1.22e-07;53!UBERON:0002616;1.22e-07;53!UBERON:0000922;4.81e-07;49!UBERON:0001950;7.02e-07;20 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.65e-16,81;UBERON:0001049,7.23e-14,56;UBERON:0005068,7.23e-14,56;UBERON:0006241,7.23e-14,56;UBERON:0007135,7.23e-14,56;UBERON:0000073,4.88e-13,53;UBERON:0002616,4.88e-13,53;UBERON:0001016,7.33e-13,89;UBERON:0002780,1.97e-12,41;UBERON:0001890,1.97e-12,41;UBERON:0003080,1.97e-12,41;UBERON:0006240,1.97e-12,41;UBERON:0003528,7.24e-12,34;UBERON:0002020,7.24e-12,34;UBERON:0000955,3.84e-11,68;UBERON:0006238,3.84e-11,68;UBERON:0002791,9.81e-11,32;UBERON:0001869,7.88e-10,32;UBERON:0001893,9.91e-10,34;UBERON:0003075,1.30e-09,82;UBERON:0007284,1.30e-09,82;UBERON:0000956,6.23e-09,25;UBERON:0000203,6.23e-09,25;UBERON:0002346,1.16e-08,86;UBERON:0002619,4.67e-08,22;UBERON:0007023,6.64e-08,114;UBERON:0010371,2.01e-07,104;UBERON:0003056,3.77e-07,61;UBERON:0000025,6.04e-07,192;UBERON:0001950,8.28e-07,20 | |||
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| ||
|short_description=p5@PODXL | |short_description=p5@PODXL | ||
}} | }} |
Latest revision as of 10:06, 16 September 2015
Short description: | p5@PODXL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PODXL_5end |
Coexpression cluster: | C957_iPS_Fibroblast_teratocarcinoma_mesenchymal_H9_leiomyoma_testicular |
Association with transcript: | -238bp_to_ENST00000482581_5end |
EntrezGene: | PODXL |
HGNC: | 9171 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 6.04e-08 | 58 |
barrier cell | 6.04e-08 | 58 |
embryonic stem cell | 1.77e-07 | 5 |
endothelial cell of vascular tree | 5.16e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.65e-16 | 81 |
neural tube | 7.23e-14 | 56 |
neural rod | 7.23e-14 | 56 |
future spinal cord | 7.23e-14 | 56 |
neural keel | 7.23e-14 | 56 |
regional part of nervous system | 4.88e-13 | 53 |
regional part of brain | 4.88e-13 | 53 |
nervous system | 7.33e-13 | 89 |
regional part of forebrain | 1.97e-12 | 41 |
forebrain | 1.97e-12 | 41 |
anterior neural tube | 1.97e-12 | 41 |
future forebrain | 1.97e-12 | 41 |
brain grey matter | 7.24e-12 | 34 |
gray matter | 7.24e-12 | 34 |
brain | 3.84e-11 | 68 |
future brain | 3.84e-11 | 68 |
regional part of telencephalon | 9.81e-11 | 32 |
cerebral hemisphere | 7.88e-10 | 32 |
telencephalon | 9.91e-10 | 34 |
neural plate | 1.30e-09 | 82 |
presumptive neural plate | 1.30e-09 | 82 |
cerebral cortex | 6.23e-09 | 25 |
pallium | 6.23e-09 | 25 |
neurectoderm | 1.16e-08 | 86 |
regional part of cerebral cortex | 4.67e-08 | 22 |
adult organism | 6.64e-08 | 114 |
ecto-epithelium | 2.01e-07 | 104 |
pre-chordal neural plate | 3.77e-07 | 61 |
tube | 6.04e-07 | 192 |
neocortex | 8.28e-07 | 20 |