FFCP PHASE1:Hg19::chr3:157824001..157824078,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6474 | |EntrezGene=6474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10854 | |HGNC=10854 | ||
|TSSclassifier=strong | |||
|UniProt=A6NLG4,O60902 | |UniProt=A6NLG4,O60902 | ||
|association_with_transcript=-49bp_to_ENST00000441443,NM_001163678,NM_003030,NM_006884,uc003fbr.2,uc003fbs.2,uc010hvw.2_5end | |association_with_transcript=-49bp_to_ENST00000441443,NM_001163678,NM_003030,NM_006884,uc003fbr.2,uc003fbs.2,uc010hvw.2_5end | ||
|cluster_id=chr3:157824001..157824078,- | |||
|description=CAGE_peak_2_at_SHOX2_5end | |description=CAGE_peak_2_at_SHOX2_5end | ||
|id=chr3:157824001..157824078,- | |id=chr3:157824001..157824078,- | ||
|ontology_enrichment_celltype=CL:0000057!9.93e-13!75;CL:0002620!1.85e-12!23;CL:0000055!5.64e-12!180 | |ontology_enrichment_celltype=CL:0000057!9.93e-13!75;CL:0002620!1.85e-12!23;CL:0000055!5.64e-12!180 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.40e-15;23!CL:0000062;5.13e-09;9!CL:0002552;3.72e-07;5!CL:0002540;8.62e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.40e-15,23;CL:0000057,7.10e-12,76;CL:0000062,5.08e-07,11;CL:0000375,5.08e-07,11;CL:0000335,5.08e-07,11;CL:0002552,5.58e-07,5;CL:0000219,5.72e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000335;4.13e-07;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;3.31e-08;5!DOID:450;3.31e-08;5!DOID:66;3.31e-08;5!DOID:423;3.31e-08;5!DOID:0080000;3.31e-08;5!DOID:11722;3.31e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.04e-08,5;DOID:450,3.04e-08,5;DOID:66,3.04e-08,5;DOID:423,3.04e-08,5;DOID:0080000,3.04e-08,5;DOID:11722,3.04e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0002097!2.17e-13!40;UBERON:0002199!3.20e-13!45;UBERON:0002416!3.20e-13!45;UBERON:0003102!1.29e-09!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;6.99e-12;41!UBERON:0002199;2.16e-09;46!UBERON:0002416;2.16e-09;46!UBERON:0003102;1.32e-08;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.79e-16,41;UBERON:0002199,4.97e-15,46;UBERON:0002416,4.97e-15,46;UBERON:0003102,2.94e-10,99 | |||
|phase1_expression=2.90685406832891,2.14100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0.522371256399677,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290796477559129,0.377875943688809,0,0.697287110717054,0,0,0,0,0,0,0,0,0.376484679085209,0.272906150057846,0.224723484445085,0,0.641858054152187,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0.605399502633369,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,1.00267582127178,1.88300474649071,0,0.973269740605272,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0.496971951695318,0.633152558322899,0.132409180813219,0.573673241497627,0,0,0,0,0.622422070799533,0.404132016209064,0,0,0,0.937285727335186,0.936480230490962,0.570471821544449,1.04614076386261,1.29177948508141,3.39933183173076,3.37081936085396,1.02077085627447,1.22834317311768,1.54988671763648,3.56400857184616,1.23633464639278,0,0,2.69337782326506,2.25213335769535,0.554128230968366,0,0.30648779579902,0.751190294532984,0,2.33206526395521,2.13557388818567,1.69545520927649,5.70173082560364,2.57631323096097,4.3798891807757,1.48893485065272,0.337552664482532,0.487185025805993,2.52433774244115,3.31379635112278,1.77810662500693,2.84007674013291,1.61203357164224,1.01736355386293,0,0,0,0,0,0,0.10366105501537,0,0,0,2.57296375277154,4.14404764057442,2.78620756819187,0,0.354920400119532,0.505754070234305,0.482022059766964,0.220587945464788,0.217879444092406,0,0,0,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0.383382679165211,0,0.088048434013226,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,2.535908257668,0,0,1.02882949704857,0,1.0656887160644,0,0,0,2.60588947434988,0,0,0,0.871533458600294,0,1.2162378064119,0,0,0,0,1.42636905040718,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11956292296211,3.56857977594324,4.1002627908823,2.10854546986884,3.31040709700491,4.5481500811197,2.0694614258501,1.32845119707087,0.737476674166813,3.12781012085098,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0.460385919864187,0.841980283299221,0,0,0,0,0.462629081407967,2.48586415438378,2.05317890034523,1.55776328755086,0.813472649219715,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.0537127952172,16.6669189839588,0,0,0,0.48335359146061,0.924291702687866,1.22802939780904,0.551346289938122,2.36324538710202,1.16013355131383,0.596586391912706,0.979352392114111,0,0,0,0,0,0,0,0.308033580176089,0,0,0.18532421910392,0.572499546967965,0,0,0,0,0,0.318203247925937,0,0.359744915166629,0,0.235624804691373,0.606547444719948,0,0.421258456238981,0,0,0,0,0,1.13008116620243,2.75682671773062,0,0,0.578775534266688,0,0,0,0.563391205064483,0,0,0,0.709522128141196,1.47775344708365,1.97576935775941,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,1.81600920916704,0,0,0,0,0,0.318852545457645,0,0,0.211673582723883,0,0.561594356226918,20.3128864339541,0,0,0.846458889008016,0,1.41259795033733,0,0,17.5127235655821,14.9862992287919,13.8484787620884,2.34465714482448,1.11362469558097,0,0.540911356951966,0,0,0,1.46508179271894,0,0.557216921387392,1.13654458722565,0,0,0,0,0,0,0.329607748453519,0,0.597743964753209,0,4.28285671352269,0.511343412510774,0,0.622079175323615,0,0,7.67358555340308,0.493217028184668,0,0,0,0.0927680981618513,0,0,0,3.62499787717397,0.227586896570999,0,0.472775363535873,4.13692047889758,1.45802306691627,0,0,0.120596438625408,0,0,0.295547618953547,0,0.10893846351899,0,3.00106008164809,1.02547850262301,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0.498635045700469,0.225595660617181,0.19606253431774,1.00692952185506,0.37950746544837,0,0.843992258112108,0.163232808159148,0,0.216388639742091,0,0.176915129006678,0,1.48260564340311,2.71840665682306,3.44592433368003,0.067401132980677,0.802577647298789,1.1713222286267,0,0,1.69946265673865,0.789168805698781,1.20990716048664,0,0,0.300646838828985,0.933193722575224,0,0,0,0,0,1.10939738410511,0,0,0,0,1.54787429224455,0.19351266257817,0.0730893170861856,0.0821154570532092,0.484945082442097,0.617792886840502,0,0.959293472527256,0.596143835108969,0,0.195551382734803,0.240476460754601,0.213452994739353,0.799238438328521,0,0,9.09453488668412,0,1.61528296235062,0,1.9026588850306,2.510468311496,1.4279750469085,2.60055530911367,0,0,0,0.429765441419957,0,2.51354161145029,0.458320848023367,1.43574604915363,0.199679000498991,0,0.89268582976749,0.671834724867263,0,0,0,0,0,3.24810688998671,0,0,0.136203406111576,0,0,0,0,0,0,0.335434687599266,0,0,0,0.179287339332845,0.959575986597226,3.57347663186684,0,0,0,0.864221491201268,0.326587360109409,2.39460383124975,0.328370082997356,2.72620834856675,0.453248366080503,0,0,0.646414781807753,0,0.171086837884329,0,0.427149650270779,0,0.414239055347196,0,0,0,0,0.544017803369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| ||
|short_description=p2@SHOX2 | |short_description=p2@SHOX2 | ||
}} | }} |
Latest revision as of 08:15, 16 September 2015
Short description: | p2@SHOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SHOX2_5end |
Coexpression cluster: | NA |
Association with transcript: | -49bp_to_ENST00000441443, NM_001163678, NM_003030, NM_006884, uc003fbr.2, uc003fbs.2, uc010hvw.2_5end |
EntrezGene: | SHOX2 |
HGNC: | 10854 |
UniProt: | A6NLG4O60902 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.40e-15 | 23 |
fibroblast | 7.10e-12 | 76 |
osteoblast | 5.08e-07 | 11 |
osteoprogenitor cell | 5.08e-07 | 11 |
mesenchyme condensation cell | 5.08e-07 | 11 |
fibroblast of gingiva | 5.58e-07 | 5 |
motile cell | 5.72e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.79e-16 | 41 |
integument | 4.97e-15 | 46 |
integumental system | 4.97e-15 | 46 |
surface structure | 2.94e-10 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.04e-08 | 5 |
myotonic disease | 3.04e-08 | 5 |
muscle tissue disease | 3.04e-08 | 5 |
myopathy | 3.04e-08 | 5 |
muscular disease | 3.04e-08 | 5 |
myotonic dystrophy | 3.04e-08 | 5 |