FFCP PHASE1:Hg19::chr13:100633726..100633749,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:100633726..100633749,+
|short_description=p6@ZIC2
|description=CAGE_peak_6_at_ZIC2_5end
|association_with_transcript=-276bp_to_ENST00000376335,NM_007129_5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7546 | |EntrezGene=7546 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12873 | |HGNC=12873 | ||
|TSSclassifier=strong | |||
|UniProt=O95409 | |UniProt=O95409 | ||
|association_with_transcript=-276bp_to_ENST00000376335,NM_007129_5end | |||
|cluster_id=chr13:100633726..100633749,+ | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_6_at_ZIC2_5end | |||
|id=chr13:100633726..100633749,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.83e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002603;2.29e-18;3!CL:0002575;1.99e-13;2!CL:0000540;1.27e-09;6!CL:0000404;1.27e-09;6!CL:0000708;6.32e-09;3!CL:0000128;3.68e-08;7!CL:0000126;3.68e-08;7!CL:0000127;3.68e-08;7!CL:0002319;1.98e-07;25!CL:0000669;3.96e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,3.01e-18,3;CL:0002575,2.26e-13,2;CL:0000540,9.92e-10,6;CL:0000031,9.92e-10,6;CL:0000404,9.92e-10,6;CL:0000708,8.69e-09,3;CL:0000128,4.13e-08,7;CL:0000126,4.13e-08,7;CL:0000127,4.13e-08,7;CL:0002453,4.13e-08,7;CL:0002319,1.89e-07,25;CL:0000047,2.10e-07,8;CL:0000669,4.22e-07,4;CL:0000306,8.10e-07,4;CL:0002222,8.10e-07,4;CL:0002224,8.10e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.07e-19;3!CL:0000031;1.27e-09;6!UBERON:0010115;3.96e-07;1 | |||
|ontology_enrichment_disease=DOID:162!1.10e-21!235;DOID:0050687!1.70e-21!143;DOID:14566!1.35e-20!239;DOID:305!1.18e-16!106;DOID:299!1.88e-08!25;DOID:0050686!1.93e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:0050619;1.19e-07;1!DOID:1357;1.19e-07;1!DOID:3371;1.31e-07;1!DOID:4549;1.31e-07;1!DOID:5861;1.31e-07;1!DOID:6496;1.31e-07;1!DOID:3151;3.96e-07;1!DOID:3149;3.96e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,1.20e-07,1;DOID:1357,1.20e-07,1;DOID:3371,1.27e-07,1;DOID:4549,1.27e-07,1;DOID:5861,1.27e-07,1;DOID:6496,1.27e-07,1;DOID:3151,7.40e-07,1;DOID:3149,7.40e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!8.22e-22!82;UBERON:0002346!2.56e-21!90;UBERON:0005743!3.06e-21!86;UBERON:0000073!8.20e-20!94;UBERON:0001016!8.20e-20!94;UBERON:0003075!4.50e-19!86;UBERON:0007284!4.50e-19!86;UBERON:0000955!5.41e-17!69;UBERON:0006238!5.41e-17!69;UBERON:0001049!9.10e-17!57;UBERON:0005068!9.10e-17!57;UBERON:0006241!9.10e-17!57;UBERON:0007135!9.10e-17!57;UBERON:0000924!2.46e-15!173;UBERON:0006601!2.46e-15!173;UBERON:0002616!4.38e-15!59;UBERON:0003076!8.27e-14!15;UBERON:0003057!8.27e-14!15;UBERON:0004121!1.12e-13!169;UBERON:0000033!6.03e-13!123;UBERON:0000153!1.33e-11!129;UBERON:0007811!1.33e-11!129;UBERON:0004733!1.50e-11!12;UBERON:0002028!1.50e-11!12;UBERON:0007277!1.50e-11!12;UBERON:0004732!2.19e-10!13;UBERON:0003056!1.70e-09!61;UBERON:0002680!6.92e-09!9;UBERON:0001895!6.92e-09!9;UBERON:0010092!6.92e-09!9;UBERON:0002037!7.21e-09!6;UBERON:0006215!7.21e-09!6;UBERON:0002780!1.05e-07!41;UBERON:0001890!1.05e-07!41;UBERON:0006240!1.05e-07!41;UBERON:0001893!1.21e-07!34;UBERON:0001869!2.06e-07!32;UBERON:0003080!2.21e-07!42;UBERON:0002791!4.86e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.99e-36;6!UBERON:0002680;3.15e-32;9!UBERON:0001895;3.15e-32;9!UBERON:0004733;5.75e-24;12!UBERON:0002028;5.75e-24;12!UBERON:0004732;4.66e-22;13!UBERON:0003210;6.32e-09;3!UBERON:0001764;1.19e-07;1!UBERON:0001825;1.19e-07;1!UBERON:0002363;3.96e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.97e-36,6;UBERON:0006215,3.97e-36,6;UBERON:0002680,3.18e-32,9;UBERON:0001895,3.18e-32,9;UBERON:0010092,3.18e-32,9;UBERON:0004733,5.79e-24,12;UBERON:0002028,5.79e-24,12;UBERON:0007277,5.79e-24,12;UBERON:0004732,4.69e-22,13;UBERON:0003076,5.31e-19,15;UBERON:0003057,5.31e-19,15;UBERON:0001016,7.09e-10,89;UBERON:0001017,1.33e-09,81;UBERON:0003210,8.69e-09,3;UBERON:0001764,1.20e-07,1;UBERON:0001825,1.20e-07,1;UBERON:0002363,2.52e-07,1;UBERON:0007645,2.52e-07,1;UBERON:0007647,2.52e-07,1;UBERON:0010115,2.52e-07,1;UBERON:0010077,8.10e-07,4;UBERON:0005389,8.10e-07,4;UBERON:0000484,8.10e-07,4;UBERON:0002546,8.10e-07,4;UBERON:0000965,8.10e-07,4;UBERON:0001803,8.10e-07,4;UBERON:0003073,8.10e-07,4;UBERON:0005426,8.10e-07,4 | |||
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| ||
|short_description=p6@ZIC2 | |||
}} | }} |
Latest revision as of 07:54, 16 September 2015
Short description: | p6@ZIC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ZIC2_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -276bp_to_ENST00000376335, NM_007129_5end |
EntrezGene: | ZIC2 |
HGNC: | 12873 |
UniProt: | O95409 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 3.01e-18 | 3 |
central nervous system pericyte | 2.26e-13 | 2 |
neuron | 9.92e-10 | 6 |
neuroblast | 9.92e-10 | 6 |
electrically signaling cell | 9.92e-10 | 6 |
leptomeningeal cell | 8.69e-09 | 3 |
oligodendrocyte | 4.13e-08 | 7 |
macroglial cell | 4.13e-08 | 7 |
astrocyte | 4.13e-08 | 7 |
oligodendrocyte precursor cell | 4.13e-08 | 7 |
neural cell | 1.89e-07 | 25 |
neuronal stem cell | 2.10e-07 | 8 |
pericyte cell | 4.22e-07 | 4 |
crystallin accumulating cell | 8.10e-07 | 4 |
vertebrate lens cell | 8.10e-07 | 4 |
lens epithelial cell | 8.10e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.97e-36 | 6 |
rhombic lip | 3.97e-36 | 6 |
regional part of metencephalon | 3.18e-32 | 9 |
metencephalon | 3.18e-32 | 9 |
future metencephalon | 3.18e-32 | 9 |
segmental subdivision of hindbrain | 5.79e-24 | 12 |
hindbrain | 5.79e-24 | 12 |
presumptive hindbrain | 5.79e-24 | 12 |
segmental subdivision of nervous system | 4.69e-22 | 13 |
posterior neural tube | 5.31e-19 | 15 |
chordal neural plate | 5.31e-19 | 15 |
nervous system | 7.09e-10 | 89 |
central nervous system | 1.33e-09 | 81 |
blood-cerebrospinal fluid barrier | 8.69e-09 | 3 |
maxillary sinus | 1.20e-07 | 1 |
paranasal sinus | 1.20e-07 | 1 |
dura mater | 2.52e-07 | 1 |
future meninx | 2.52e-07 | 1 |
ectomeninx | 2.52e-07 | 1 |
future dura mater | 2.52e-07 | 1 |
cuboidal epithelium | 8.10e-07 | 4 |
transparent eye structure | 8.10e-07 | 4 |
simple cuboidal epithelium | 8.10e-07 | 4 |
cranial placode | 8.10e-07 | 4 |
lens of camera-type eye | 8.10e-07 | 4 |
epithelium of lens | 8.10e-07 | 4 |
lens placode | 8.10e-07 | 4 |
lens vesicle | 8.10e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 1.20e-07 | 1 |
maxillary sinus cancer | 1.20e-07 | 1 |
chondrosarcoma | 1.27e-07 | 1 |
extraosseous chondrosarcoma | 1.27e-07 | 1 |
myxoid chondrosarcoma | 1.27e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 1.27e-07 | 1 |
skin squamous cell carcinoma | 7.40e-07 | 1 |
keratoacanthoma | 7.40e-07 | 1 |