FFCP PHASE1:Hg19::chr16:3030407..3030489,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:3030407..3030489,- to FFCP PHASE1:Hg19::chr16:3030407..3030489,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9088 | |EntrezGene=9088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29650 | |HGNC=29650 | ||
|TSSclassifier=strong | |||
|UniProt=B4DZM6,F8W164 | |UniProt=B4DZM6,F8W164 | ||
|association_with_transcript=0bp_to_ENST00000431515,ENST00000440027,uc002csm.2,uc002csn.2,uc002cso.2,uc002csp.2,uc002csq.2_5end | |||
|cluster_id=chr16:3030407..3030489,- | |||
|coexpression_cluster_id=C1713 | |||
|description=CAGE_peak_1_at_PKMYT1_5end | |||
|id=chr16:3030407..3030489,- | |||
|ontology_enrichment_celltype=CL:0000066!2.63e-24!254;CL:0000548!3.33e-18!679;CL:0000004!3.33e-18!679;CL:0000255!3.33e-18!679;CL:0000012!7.38e-18!682;CL:0002321!1.66e-11!248;CL:0000220!5.84e-11!246;CL:0000003!9.21e-10!722;CL:0000063!4.09e-09!578;CL:0000333!3.31e-08!41;CL:0000221!9.09e-08!71;CL:0000133!3.11e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.58e-25,253;CL:0002321,2.36e-11,250;CL:0000333,2.26e-08,41;CL:0000221,2.52e-07,72;CL:0000133,2.64e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.89e-40!235;DOID:14566!6.73e-39!239;DOID:0050686!1.45e-20!137;DOID:0050687!1.47e-19!143;DOID:2531!3.00e-18!51;DOID:0060083!3.00e-18!51;DOID:305!2.80e-15!106;DOID:1240!2.82e-15!39;DOID:8692!2.62e-12!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;2.83e-12;39!DOID:8692;4.34e-12;31!DOID:2531;1.49e-11;51!DOID:0060083;1.49e-11;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.54e-40,235;DOID:14566,7.65e-39,239;DOID:0050686,1.31e-20,137;DOID:0050687,1.57e-19,143;DOID:2531,1.75e-18,51;DOID:0060083,1.75e-18,51;DOID:1240,1.81e-15,39;DOID:305,2.35e-15,106;DOID:8692,1.85e-12,31 | |||
|ontology_enrichment_uberon=UBERON:0000072!9.83e-08!46 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000072,3.31e-07,47 | |||
|phase1_expression=0.54503513781167,5.99481466894753,0.140954404095971,5.00366491765652,0,0,7.59899634504932,0.631719873426831,0.522371256399677,38.3344940942354,223.994174919149,56.5763153817146,33.4984062350136,1.98026164736075,1.32558950291166,2.6893005858071,2.41077811209591,2.92124036154949,1.95173119516203,55.2813550764778,61.6082087557644,14.418917187992,18.6053391635187,37.9142157451889,35.2774817261396,38.5887699027154,39.0798805781742,39.4341014381533,0.393364276848904,0.383829398097213,0.928896739896456,85.5061738765402,52.4098298674155,11.4623743151704,55.2341140137551,28.5760157299717,26.7176399794711,0.553995408531877,0.200544447470142,0,1.11957737119962,0.971680998056939,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28019066769952,0,0,1.32208974556972,0.954053754535364,0,0.587237189370939,1.52909291250092,0,0.560508562981536,25.0214880536323,0.196709770113833,1.17903228824749,0.411202997999018,3.67810289859492,0,0,0,8.35578426638802,0.294605907474837,1.32920336750173,0,20.3665198363824,19.5089021339817,29.7632607332654,21.831651405082,14.7799573724877,0,0,1.04535523804977,22.0953218260254,0,0.68725489096526,0.253019692019503,0.637130828648193,0.651083453856419,0,0.752875595388864,0.127986611154418,1.24930726552346,0.473554504088034,0.821127996921047,0.201606743224732,0.802320587350522,0,0,10.0605128955545,8.438929081673,36.5053543908412,1.50401373190767,6.37324683427624,5.5670016293577,4.86634870302636,15.314640380579,8.86917589850256,9.13481771208511,27.7020744677662,49.5441592077857,87.5051284971253,0,0,0.132957960518865,0,0,0,12.124506849369,18.0649264972286,14.9270415691266,8.47961912886015,18.8774746294458,31.9136928650478,20.8994966536811,2.06733407335463,1.06729878806013,5.35552980423472,18.1273192699116,2.28081631715554,16.5962199132755,19.486143258331,8.1014194788176,15.5381527214299,24.9227603615048,29.0537619646971,24.5306619945413,18.0360475317944,15.2057447462238,0,0,27.0378312328371,0.993943903390637,13.6760952597746,0,23.2337662806539,27.3094654292735,10.0921968025615,8.5399196583764,8.38669664618344,8.71390899119346,8.35206166832066,21.9038950172035,8.1733010928263,1.15235184896,46.6299649349255,7.80400192075801,15.9732110032446,6.12739590262384,47.0912339561497,57.4648952506867,56.7421259077084,6.53293348015658,41.1494962994423,6.40619843289746,8.31602000097437,9.39614331258516,27.3048408581408,16.5282172617735,35.8555922722161,48.1706301507062,20.7798086613137,28.5335453572545,11.0335606487647,12.3195208303409,25.4088090278447,57.9428523275024,2.77624605464138,6.14602513362729,61.5186746973025,8.34725486831355,6.69865404118636,2.97786970130544,37.8058984220436,11.8873146296662,26.0006787471438,2.66944706062668,1.93975268182574,20.5905563659636,16.8256004040159,20.3472710772585,9.08326009867495,13.9100521501326,15.2006435556172,50.9850091621709,50.2287821938429,45.0832498333731,38.9765566857793,49.9595284733744,47.4470566798579,7.8224766164908,7.71889125831462,60.7793653950914,0.464367928031979,0,65.0687400219141,53.9471008249925,67.483088367375,58.786687466366,58.1738115726724,63.1139846835517,64.8538592250391,61.0248756539826,66.9460053086719,18.4538863656162,53.2918740453094,8.231480226628,13.2307840246988,0,0,1.18157981336281,126.25844643259,19.1861964127257,11.3234754797027,5.81676512665715,20.2323155863715,72.6824470536091,19.8139272639253,8.79682424337877,55.1165436198177,20.2063878835383,7.18768510845476,1.40890433082986,9.52818555223087,26.3901742168668,15.7910946354717,95.6147321530723,72.9713237780642,2.95460407304877,6.55211942389866,17.5384771500699,4.68669169933885,2.18376766658517,12.0508832656029,49.8840971454865,54.3485465021109,87.4112508496681,1.97065295158377,11.0060542516533,1.03664057770386,0.432359860250884,0.37872730027914,100.771158241672,47.7485531947847,37.509583107215,68.4289784090821,127.300435966715,61.5703268580031,14.8629744967901,39.5822727739123,35.3127655754957,54.343669793324,0.129271715757778,0,55.789981668696,2.12750493267896,13.5209667984776,68.1599541794676,85.109479213967,88.7185856123611,3.14551586047925,0.542621605391443,38.6922958286961,40.3912868524231,1.06617584622764,49.1010161218726,0,0,5.09862255028491,3.64871341923571,2.51128545716063,4.21667878966063,5.03212196532324,1.14861935834114,19.9691667057006,8.54209709338717,13.3559609657749,17.7270353607497,88.5472637548866,1.18218456121156,0.862510299438069,0.256686072559497,13.4670150837906,6.50699269288109,20.8787979449978,15.5790126760944,12.1208362814101,0,0,0.414415513436035,0.24538298343828,3.00102312635806,3.52644530809656,4.99130067673937,6.95873056308931,5.67728694122165,11.9484243292567,0.300946099727719,0,8.27784570340039,21.255219153134,19.3587626968788,13.1194257846805,4.30762546418029,8.5785855952714,0.413536052245775,0.215714200818617,0.426910231213777,71.234979289871,61.5811126188839,115.210701758608,0.248107807818777,7.21271274453894,3.92924132206303,0.128139149255701,2.0468289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| ||
|short_description=p1@PKMYT1 | |||
}} | }} |
Latest revision as of 07:13, 16 September 2015
Short description: | p1@PKMYT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PKMYT1_5end |
Coexpression cluster: | C1713_Alveolar_Renal_Hodgkin_chronic_MCF7_Placental_Melanocyte |
Association with transcript: | 0bp_to_ENST00000431515, ENST00000440027, uc002csm.2, uc002csn.2, uc002cso.2, uc002csp.2, uc002csq.2_5end |
EntrezGene: | PKMYT1 |
HGNC: | 29650 |
UniProt: | B4DZM6F8W164 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.58e-25 | 253 |
embryonic cell | 2.36e-11 | 250 |
migratory neural crest cell | 2.26e-08 | 41 |
ectodermal cell | 2.52e-07 | 72 |
neurectodermal cell | 2.64e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
segment of respiratory tract | 3.31e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.54e-40 | 235 |
disease of cellular proliferation | 7.65e-39 | 239 |
organ system cancer | 1.31e-20 | 137 |
cell type cancer | 1.57e-19 | 143 |
hematologic cancer | 1.75e-18 | 51 |
immune system cancer | 1.75e-18 | 51 |
leukemia | 1.81e-15 | 39 |
carcinoma | 2.35e-15 | 106 |
myeloid leukemia | 1.85e-12 | 31 |