FFCP PHASE1:Hg19::chr17:5323465..5323490,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84268 | |EntrezGene=84268 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28641 | |HGNC=28641 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-28bp_to_ENST00000327154_5end | |association_with_transcript=-28bp_to_ENST00000327154_5end | ||
|cluster_id=chr17:5323465..5323490,+ | |||
|description=CAGE_peak_2_at_RPAIN_5end | |description=CAGE_peak_2_at_RPAIN_5end | ||
|id=chr17:5323465..5323490,+ | |id=chr17:5323465..5323490,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.58e-07!239;DOID:162!5.28e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.60e-07,239;DOID:162,5.34e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.67e-14!94;UBERON:0001016!1.67e-14!94;UBERON:0001017!1.83e-12!82;UBERON:0002780!1.96e-12!41;UBERON:0001890!1.96e-12!41;UBERON:0006240!1.96e-12!41;UBERON:0005743!2.26e-12!86;UBERON:0002346!3.73e-12!90;UBERON:0003080!8.92e-12!42;UBERON:0001869!1.79e-11!32;UBERON:0003056!1.87e-11!61;UBERON:0001049!5.10e-11!57;UBERON:0005068!5.10e-11!57;UBERON:0006241!5.10e-11!57;UBERON:0007135!5.10e-11!57;UBERON:0000955!7.39e-11!69;UBERON:0006238!7.39e-11!69;UBERON:0002020!7.58e-11!34;UBERON:0003528!7.58e-11!34;UBERON:0003075!1.52e-10!86;UBERON:0007284!1.52e-10!86;UBERON:0001893!4.31e-10!34;UBERON:0002616!5.26e-10!59;UBERON:0002791!9.48e-10!33;UBERON:0000956!2.64e-09!25;UBERON:0000203!2.64e-09!25;UBERON:0002619!1.06e-08!22;UBERON:0000924!3.69e-08!173;UBERON:0006601!3.69e-08!173;UBERON:0001950!5.71e-08!20;UBERON:0004121!4.56e-07!169;UBERON:0000033!7.60e-07!123;UBERON:0000025!9.55e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;8.08e-11;32!UBERON:0002791;4.19e-10;32!UBERON:0003528;5.84e-10;34!UBERON:0002020;5.84e-10;34!UBERON:0000956;1.94e-09;25!UBERON:0000203;1.94e-09;25!UBERON:0002780;4.03e-09;41!UBERON:0001890;4.03e-09;41!UBERON:0001893;5.24e-09;34!UBERON:0002619;6.81e-09;22!UBERON:0001950;4.02e-08;20!UBERON:0000955;7.11e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.54e-15,89;UBERON:0001017,6.69e-13,81;UBERON:0002780,1.96e-12,41;UBERON:0001890,1.96e-12,41;UBERON:0003080,1.96e-12,41;UBERON:0006240,1.96e-12,41;UBERON:0003056,2.24e-12,61;UBERON:0002346,2.33e-12,86;UBERON:0001049,1.58e-11,56;UBERON:0005068,1.58e-11,56;UBERON:0006241,1.58e-11,56;UBERON:0007135,1.58e-11,56;UBERON:0000073,1.61e-11,53;UBERON:0002616,1.61e-11,53;UBERON:0001869,1.79e-11,32;UBERON:0000955,2.68e-11,68;UBERON:0006238,2.68e-11,68;UBERON:0003528,7.58e-11,34;UBERON:0002020,7.58e-11,34;UBERON:0003075,1.02e-10,82;UBERON:0007284,1.02e-10,82;UBERON:0002791,1.08e-10,32;UBERON:0001893,4.31e-10,34;UBERON:0000956,2.64e-09,25;UBERON:0000203,2.64e-09,25;UBERON:0011216,8.96e-09,223;UBERON:0002619,1.06e-08,22;UBERON:0010314,4.88e-08,132;UBERON:0001950,5.71e-08,20;UBERON:0004121,7.77e-08,171;UBERON:0000924,7.77e-08,171;UBERON:0006601,7.77e-08,171;UBERON:0000025,9.11e-07,192 | |||
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30758082 | ||
|short_description=p2@RPAIN | |short_description=p2@RPAIN | ||
}} | }} |
Latest revision as of 06:47, 16 September 2015
Short description: | p2@RPAIN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RPAIN_5end |
Coexpression cluster: | NA |
Association with transcript: | -28bp_to_ENST00000327154_5end |
EntrezGene: | RPAIN |
HGNC: | 28641 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 4.54e-15 | 89 |
central nervous system | 6.69e-13 | 81 |
regional part of forebrain | 1.96e-12 | 41 |
forebrain | 1.96e-12 | 41 |
anterior neural tube | 1.96e-12 | 41 |
future forebrain | 1.96e-12 | 41 |
pre-chordal neural plate | 2.24e-12 | 61 |
neurectoderm | 2.33e-12 | 86 |
neural tube | 1.58e-11 | 56 |
neural rod | 1.58e-11 | 56 |
future spinal cord | 1.58e-11 | 56 |
neural keel | 1.58e-11 | 56 |
regional part of nervous system | 1.61e-11 | 53 |
regional part of brain | 1.61e-11 | 53 |
cerebral hemisphere | 1.79e-11 | 32 |
brain | 2.68e-11 | 68 |
future brain | 2.68e-11 | 68 |
brain grey matter | 7.58e-11 | 34 |
gray matter | 7.58e-11 | 34 |
neural plate | 1.02e-10 | 82 |
presumptive neural plate | 1.02e-10 | 82 |
regional part of telencephalon | 1.08e-10 | 32 |
telencephalon | 4.31e-10 | 34 |
cerebral cortex | 2.64e-09 | 25 |
pallium | 2.64e-09 | 25 |
organ system subdivision | 8.96e-09 | 223 |
regional part of cerebral cortex | 1.06e-08 | 22 |
structure with developmental contribution from neural crest | 4.88e-08 | 132 |
neocortex | 5.71e-08 | 20 |
ectoderm-derived structure | 7.77e-08 | 171 |
ectoderm | 7.77e-08 | 171 |
presumptive ectoderm | 7.77e-08 | 171 |
tube | 9.11e-07 | 192 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.60e-07 | 239 |
cancer | 5.34e-07 | 235 |