FFCP PHASE1:Hg19::chr2:239148671..239148686,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:239148671..239148686,- to FFCP PHASE1:Hg19::chr2:239148671..239148686,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55502 | |EntrezGene=55502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18254 | |HGNC=18254 | ||
|TSSclassifier=strong | |||
|UniProt=B8ZZA9,Q96HZ4 | |UniProt=B8ZZA9,Q96HZ4 | ||
|association_with_transcript=0bp_to_ENST00000409160,ENST00000409574,NM_001142853,NM_018645,uc002vxz.2,uc002vya.2,uc002vyb.2_5end | |||
|cluster_id=chr2:239148671..239148686,- | |||
|description=CAGE_peak_1_at_HES6_5end | |||
|id=chr2:239148671..239148686,- | |||
|ontology_enrichment_celltype=CL:0000133!1.82e-07!59;CL:0002319!4.37e-07!25;CL:0000148!9.22e-07!10;CL:0000541!9.22e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0002319;5.01e-07;25!CL:0000148;6.87e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,2.34e-07,59;CL:0002319,6.31e-07,25;CL:0000148,7.68e-07,10;CL:0000541,7.68e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.20e-19!235;DOID:14566!1.23e-18!239;DOID:0050687!5.31e-15!143;DOID:0050686!3.02e-10!137;DOID:305!6.64e-09!106;DOID:1240!4.54e-08!39;DOID:8692!4.32e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.47e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.29e-19,235;DOID:14566,9.58e-19,239;DOID:0050687,4.30e-15,143;DOID:0050686,2.32e-10,137;DOID:305,6.19e-09,106;DOID:1240,4.07e-08,39;DOID:8692,4.02e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0000073!9.91e-26!94;UBERON:0001016!9.91e-26!94;UBERON:0001017!2.74e-25!82;UBERON:0005743!4.22e-25!86;UBERON:0000955!3.22e-20!69;UBERON:0006238!3.22e-20!69;UBERON:0001049!6.85e-20!57;UBERON:0005068!6.85e-20!57;UBERON:0006241!6.85e-20!57;UBERON:0007135!6.85e-20!57;UBERON:0002346!1.27e-17!90;UBERON:0002616!4.46e-17!59;UBERON:0003075!2.19e-16!86;UBERON:0007284!2.19e-16!86;UBERON:0002780!5.88e-16!41;UBERON:0001890!5.88e-16!41;UBERON:0006240!5.88e-16!41;UBERON:0003080!6.09e-16!42;UBERON:0001893!1.80e-14!34;UBERON:0002020!2.10e-14!34;UBERON:0003528!2.10e-14!34;UBERON:0002791!5.14e-14!33;UBERON:0003056!7.43e-14!61;UBERON:0001869!1.17e-13!32;UBERON:0000924!6.62e-13!173;UBERON:0006601!6.62e-13!173;UBERON:0004121!6.42e-12!169;UBERON:0000956!7.50e-12!25;UBERON:0000203!7.50e-12!25;UBERON:0002619!2.81e-10!22;UBERON:0001950!8.67e-10!20;UBERON:0000033!5.25e-09!123;UBERON:0007023!9.99e-09!115;UBERON:0000153!1.26e-08!129;UBERON:0007811!1.26e-08!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;9.68e-13;34!UBERON:0001869;1.04e-12;32!UBERON:0003528;1.39e-12;34!UBERON:0002020;1.39e-12;34!UBERON:0002791;1.55e-12;32!UBERON:0002780;3.52e-12;41!UBERON:0001890;3.52e-12;41!UBERON:0000956;5.09e-12;25!UBERON:0000203;5.09e-12;25!UBERON:0000073;2.69e-11;53!UBERON:0002616;2.69e-11;53!UBERON:0002619;2.09e-10;22!UBERON:0001950;6.32e-10;20!UBERON:0001017;9.06e-10;75!UBERON:0000955;1.34e-09;68!UBERON:0001016;2.23e-09;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.70e-26,89;UBERON:0001017,1.28e-25,81;UBERON:0000955,1.81e-20,68;UBERON:0006238,1.81e-20,68;UBERON:0001049,3.62e-20,56;UBERON:0005068,3.62e-20,56;UBERON:0006241,3.62e-20,56;UBERON:0007135,3.62e-20,56;UBERON:0000073,8.42e-19,53;UBERON:0002616,8.42e-19,53;UBERON:0011216,2.55e-18,223;UBERON:0002346,1.36e-17,86;UBERON:0003075,2.47e-16,82;UBERON:0007284,2.47e-16,82;UBERON:0002780,3.56e-16,41;UBERON:0001890,3.56e-16,41;UBERON:0003080,3.56e-16,41;UBERON:0006240,3.56e-16,41;UBERON:0001893,1.14e-14,34;UBERON:0003528,1.34e-14,34;UBERON:0002020,1.34e-14,34;UBERON:0003056,2.15e-14,61;UBERON:0001869,7.67e-14,32;UBERON:0002791,1.02e-13,32;UBERON:0010371,1.15e-12,104;UBERON:0004121,4.00e-12,171;UBERON:0000924,4.00e-12,171;UBERON:0006601,4.00e-12,171;UBERON:0000956,5.23e-12,25;UBERON:0000203,5.23e-12,25;UBERON:0002619,2.07e-10,22;UBERON:0001950,6.50e-10,20;UBERON:0007023,4.97e-08,114 | |||
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| ||
|short_description=p1@HES6 | |||
}} | }} |
Latest revision as of 05:40, 16 September 2015
Short description: | p1@HES6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HES6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000409160, ENST00000409574, NM_001142853, NM_018645, uc002vxz.2, uc002vya.2, uc002vyb.2_5end |
EntrezGene: | HES6 |
HGNC: | 18254 |
UniProt: | B8ZZA9Q96HZ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 2.34e-07 | 59 |
neural cell | 6.31e-07 | 25 |
melanocyte | 7.68e-07 | 10 |
melanoblast | 7.68e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.70e-26 | 89 |
central nervous system | 1.28e-25 | 81 |
brain | 1.81e-20 | 68 |
future brain | 1.81e-20 | 68 |
neural tube | 3.62e-20 | 56 |
neural rod | 3.62e-20 | 56 |
future spinal cord | 3.62e-20 | 56 |
neural keel | 3.62e-20 | 56 |
regional part of nervous system | 8.42e-19 | 53 |
regional part of brain | 8.42e-19 | 53 |
organ system subdivision | 2.55e-18 | 223 |
neurectoderm | 1.36e-17 | 86 |
neural plate | 2.47e-16 | 82 |
presumptive neural plate | 2.47e-16 | 82 |
regional part of forebrain | 3.56e-16 | 41 |
forebrain | 3.56e-16 | 41 |
anterior neural tube | 3.56e-16 | 41 |
future forebrain | 3.56e-16 | 41 |
telencephalon | 1.14e-14 | 34 |
brain grey matter | 1.34e-14 | 34 |
gray matter | 1.34e-14 | 34 |
pre-chordal neural plate | 2.15e-14 | 61 |
cerebral hemisphere | 7.67e-14 | 32 |
regional part of telencephalon | 1.02e-13 | 32 |
ecto-epithelium | 1.15e-12 | 104 |
ectoderm-derived structure | 4.00e-12 | 171 |
ectoderm | 4.00e-12 | 171 |
presumptive ectoderm | 4.00e-12 | 171 |
cerebral cortex | 5.23e-12 | 25 |
pallium | 5.23e-12 | 25 |
regional part of cerebral cortex | 2.07e-10 | 22 |
neocortex | 6.50e-10 | 20 |
adult organism | 4.97e-08 | 114 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.29e-19 | 235 |
disease of cellular proliferation | 9.58e-19 | 239 |
cell type cancer | 4.30e-15 | 143 |
organ system cancer | 2.32e-10 | 137 |
carcinoma | 6.19e-09 | 106 |
leukemia | 4.07e-08 | 39 |
myeloid leukemia | 4.02e-07 | 31 |