FFCP PHASE1:Hg19::chr10:105881088..105881102,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr10:105881088..105881102,+
|short_description=p10@SFR1
|description=CAGE_peak_10_at_SFR1_5end
|association_with_transcript=211bp_to_AK123954_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=119392 | |EntrezGene=119392 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29574 | |HGNC=29574 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=211bp_to_AK123954_5end | |||
|cluster_id=chr10:105881088..105881102,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_10_at_SFR1_5end | |||
|id=chr10:105881088..105881102,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.84e-70!42;CL:0000860!1.22e-64!45;CL:0002009!8.76e-44!65;CL:0002194!1.47e-42!63;CL:0000576!1.47e-42!63;CL:0000040!1.47e-42!63;CL:0000559!1.47e-42!63;CL:0000557!2.61e-39!71;CL:0002087!7.16e-38!119;CL:0000839!2.06e-37!70;CL:0000766!4.02e-36!76;CL:0000738!6.51e-34!140;CL:0002031!2.36e-32!124;CL:0000037!9.24e-27!172;CL:0000566!9.24e-27!172;CL:0000988!1.31e-24!182;CL:0000763!4.08e-23!112;CL:0000049!4.08e-23!112;CL:0002032!7.62e-23!165;CL:0000837!7.62e-23!165;CL:0000134!1.24e-09!358;CL:0002320!3.29e-09!365;CL:0000219!8.00e-09!390;CL:0000842!1.12e-08!3;CL:0000048!1.60e-07!430;CL:0000034!2.05e-07!444;CL:0000723!3.04e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.20e-97;33!CL:0002057;2.20e-97;33!CL:0000473;5.02e-66;39!CL:0000234;5.02e-66;39!CL:0000576;1.08e-52;48!CL:0000766;1.56e-34;69!CL:0002087;1.97e-17;104!CL:0000763;1.26e-14;100!CL:0000738;1.33e-07;136!CL:0002393;8.22e-07;6!CL:0002397;8.22e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.25e-101,42;CL:0002057,4.25e-101,42;CL:0000473,3.98e-88,48;CL:0000234,3.98e-88,48;CL:0002194,5.89e-70,59;CL:0000576,5.89e-70,59;CL:0000040,5.89e-70,59;CL:0000559,5.89e-70,59;CL:0002009,1.31e-67,61;CL:0000839,2.33e-62,66;CL:0000557,2.12e-61,67;CL:0000766,5.28e-57,72;CL:0000763,3.11e-37,108;CL:0000049,3.11e-37,108;CL:0002087,8.22e-35,115;CL:0002031,2.98e-33,120;CL:0000738,5.04e-29,136;CL:0002032,4.40e-24,161;CL:0000837,4.40e-24,161;CL:0000037,5.84e-23,168;CL:0000988,1.21e-21,177;CL:0000134,2.93e-09,354;CL:0002320,5.13e-09,361;CL:0000219,3.71e-08,386;CL:0000048,4.21e-07,427;CL:0000723,5.89e-07,433;CL:0000034,9.09e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;4.63e-70;42!CL:0000049;6.19e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.83e-36!80;UBERON:0001474!5.87e-33!86;UBERON:0002390!1.12e-31!102;UBERON:0003061!1.12e-31!102;UBERON:0002193!6.21e-28!112;UBERON:0004765!1.20e-26!101;UBERON:0001434!1.20e-26!101;UBERON:0002405!3.01e-22!115;UBERON:0002204!2.24e-14!167;UBERON:0003081!3.77e-12!216;UBERON:0002384!1.24e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.75e-54,76;UBERON:0001474,8.50e-50,82;UBERON:0004765,3.61e-45,90;UBERON:0002405,1.23e-43,93;UBERON:0002390,2.75e-41,98;UBERON:0003061,2.75e-41,98;UBERON:0001434,2.06e-40,100;UBERON:0002193,3.11e-37,108;UBERON:0002204,4.09e-23,167;UBERON:0003081,1.71e-18,203;UBERON:0000926,8.25e-11,315;UBERON:0004120,8.25e-11,315;UBERON:0006603,8.25e-11,315;UBERON:0002384,1.10e-08,371 | |||
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| ||
|short_description=p10@SFR1 | |||
}} | }} |
Latest revision as of 05:16, 16 September 2015
Short description: | p10@SFR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_SFR1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 211bp_to_AK123954_5end |
EntrezGene: | SFR1 |
HGNC: | 29574 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.25e-101 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.25e-101 | 42 |
defensive cell | 3.98e-88 | 48 |
phagocyte | 3.98e-88 | 48 |
monopoietic cell | 5.89e-70 | 59 |
monocyte | 5.89e-70 | 59 |
monoblast | 5.89e-70 | 59 |
promonocyte | 5.89e-70 | 59 |
macrophage dendritic cell progenitor | 1.31e-67 | 61 |
myeloid lineage restricted progenitor cell | 2.33e-62 | 66 |
granulocyte monocyte progenitor cell | 2.12e-61 | 67 |
myeloid leukocyte | 5.28e-57 | 72 |
myeloid cell | 3.11e-37 | 108 |
common myeloid progenitor | 3.11e-37 | 108 |
nongranular leukocyte | 8.22e-35 | 115 |
hematopoietic lineage restricted progenitor cell | 2.98e-33 | 120 |
leukocyte | 5.04e-29 | 136 |
hematopoietic oligopotent progenitor cell | 4.40e-24 | 161 |
hematopoietic multipotent progenitor cell | 4.40e-24 | 161 |
hematopoietic stem cell | 5.84e-23 | 168 |
hematopoietic cell | 1.21e-21 | 177 |
mesenchymal cell | 2.93e-09 | 354 |
connective tissue cell | 5.13e-09 | 361 |
motile cell | 3.71e-08 | 386 |
multi fate stem cell | 4.21e-07 | 427 |
somatic stem cell | 5.89e-07 | 433 |
stem cell | 9.09e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.75e-54 | 76 |
bone element | 8.50e-50 | 82 |
skeletal element | 3.61e-45 | 90 |
immune system | 1.23e-43 | 93 |
hematopoietic system | 2.75e-41 | 98 |
blood island | 2.75e-41 | 98 |
skeletal system | 2.06e-40 | 100 |
hemolymphoid system | 3.11e-37 | 108 |
musculoskeletal system | 4.09e-23 | 167 |
lateral plate mesoderm | 1.71e-18 | 203 |
mesoderm | 8.25e-11 | 315 |
mesoderm-derived structure | 8.25e-11 | 315 |
presumptive mesoderm | 8.25e-11 | 315 |
connective tissue | 1.10e-08 | 371 |