FFCP PHASE1:Hg19::chr2:238592039..238592054,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:238592039..238592054,+
|short_description=p4@LRRFIP1
|description=CAGE_peak_4_at_LRRFIP1_5end
|association_with_transcript=0bp_to_ENST00000489295,ENST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9208 | |EntrezGene=9208 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6702 | |HGNC=6702 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000489295,ENST00000498053_5end | |||
|cluster_id=chr2:238592039..238592054,+ | |||
|coexpression_cluster_id=C106 | |||
|description=CAGE_peak_4_at_LRRFIP1_5end | |||
|id=chr2:238592039..238592054,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.07e-13!254;CL:0002076!1.92e-09!43;CL:0000223!4.97e-09!59;CL:0002368!1.20e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002537;9.09e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.05e-07,253;CL:0002537,8.91e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.91e-38;29!UBERON:0006595;3.03e-14;86!UBERON:0001041;4.08e-09;30 | |||
|ontology_enrichment_disease=DOID:305!3.97e-22!106;DOID:0050687!1.95e-13!143;DOID:1749!3.68e-10!14;DOID:299!4.00e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.55e-13;14!DOID:5093;1.40e-07;4!DOID:1612;1.40e-07;4!DOID:305;1.45e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.65e-20,106;DOID:1749,1.35e-13,14;DOID:0050687,4.72e-13,143;DOID:5093,1.36e-07,4;DOID:1612,1.36e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001004!4.75e-28!72;UBERON:0000065!1.18e-26!53;UBERON:0004119!3.27e-23!169;UBERON:0000925!3.27e-23!169;UBERON:0006595!3.27e-23!169;UBERON:0008947!6.65e-20!38;UBERON:0003258!6.65e-20!38;UBERON:0001041!8.21e-20!98;UBERON:0000077!1.14e-19!130;UBERON:0001007!2.93e-19!155;UBERON:0001555!2.93e-19!155;UBERON:0007026!2.93e-19!155;UBERON:0004921!4.26e-19!129;UBERON:0004185!4.26e-19!129;UBERON:0000072!4.30e-19!46;UBERON:0001557!2.03e-17!19;UBERON:0001737!1.94e-16!9;UBERON:0003104!9.19e-11!238;UBERON:0009142!9.19e-11!238;UBERON:0005181!3.92e-09!35;UBERON:0005178!2.47e-08!34;UBERON:0002224!2.47e-08!34;UBERON:0001048!4.32e-08!168;UBERON:0000915!4.88e-08!52;UBERON:0005631!2.79e-07!14;UBERON:0000158!2.79e-07!14;UBERON:0005911!5.32e-07!82;UBERON:0002048!7.28e-07!22;UBERON:0000117!7.28e-07!22;UBERON:0000171!7.28e-07!22;UBERON:0000170!7.28e-07!22;UBERON:0005597!7.28e-07!22;UBERON:0000118!7.28e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.11e-31;9!UBERON:0001557;5.11e-31;9!UBERON:0000065;1.14e-21;44!UBERON:0000072;4.92e-17;37!UBERON:0001004;2.14e-16;65!UBERON:0000002;7.86e-09;6!UBERON:0001560;7.86e-09;6!UBERON:0002048;1.58e-08;22!UBERON:0000117;1.58e-08;22!UBERON:0000171;1.58e-08;22!UBERON:0000170;1.58e-08;22!UBERON:0005178;6.38e-08;34!UBERON:0002224;6.38e-08;34!UBERON:0006562;4.35e-07;2!UBERON:0005181;5.15e-07;35!UBERON:0003127;5.77e-07;2!UBERON:0001829;7.39e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.21e-31,9;UBERON:0000065,2.02e-29,54;UBERON:0008947,1.01e-27,38;UBERON:0003258,1.01e-27,38;UBERON:0001004,1.16e-27,74;UBERON:0004921,1.04e-24,118;UBERON:0001041,1.33e-24,87;UBERON:0001557,7.33e-24,19;UBERON:0001007,1.05e-22,145;UBERON:0001555,1.05e-22,145;UBERON:0007026,1.05e-22,145;UBERON:0004119,2.83e-22,160;UBERON:0000925,2.83e-22,160;UBERON:0006595,2.83e-22,160;UBERON:0000072,2.69e-21,47;UBERON:0005178,2.15e-09,34;UBERON:0002224,2.15e-09,34;UBERON:0005181,4.66e-09,35;UBERON:0000915,5.67e-09,52;UBERON:0000002,7.47e-09,6;UBERON:0001560,7.47e-09,6;UBERON:0011216,7.98e-09,223;UBERON:0002048,1.60e-08,22;UBERON:0000117,1.60e-08,22;UBERON:0000171,1.60e-08,22;UBERON:0000170,1.60e-08,22;UBERON:0005597,1.60e-08,22;UBERON:0000118,1.60e-08,22;UBERON:0001048,1.87e-07,160;UBERON:0003127,7.17e-07,2;UBERON:0001829,7.86e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,1.39560233594486,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916853528483988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,25.0810416084469,31.8625064247612,30.8494118250857,26.2499655103098,29.6316043965672,29.1842861506649,29.1235625625955,36.1047495830637,31.549266869604,0,0,0,0,3.80265104465493,0,18.3144871071235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1608175918371,3.43394464837949,0,0,0,0,0.16798212819886,0,0.179117045405697,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29731237272711,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0,0.0852266274161009,0.267096106940212,0.165284915360978,0.384380134730212,1.14851441245126,1.4162089319777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0.670302275535787,0,2.91845782408015,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68426486367398,0,0,0,0,10.2660128437207,10.690728509975,27.3373024868317,0,0,0,0,0,0,0,0,0,0,0,4.49341755736634,0.537063524026827,0,2.86065876347107,0,0,0,0,0,3.9064164162785,0.174919999992391,0,4.43794448313449,12.2041752140528,16.7835254055235,0,0,0,0,0,0,0,0,0,7.7346309098483,9.89908584378083,1.61595542857974,0,0,0,0,2.87101043758728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98104772431402,0.973033209536731,0,0,0,0,0,0.802577647298789,0,0,5.47860933009851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,5.29158946037639,9.05415748436187,0.52418000472609,0,0.677294319023596,0.803982487948041,0.164230914106418,7.75912131907355,0,0.225980740780532,0,0,0,4.69323318563527,0.160317640503067,0,0.999048047910651,0,0,0,0.288109595976299,0,25.2192617039971,0,0,0,0,0,0,0,0,0,0.837847203816763,0,0.717873024576814,0.798716001995964,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.670869375198532,0,0.0524545881349981,0,0,9.78767506329171,0,0,0,0,0,0,0,0,0,0,3.51725360827398,0,0,0,0,14.8011154686501,6.30045734149399,8.96064539068096,5.38510771951354,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0.219284049578707,0,0,0.675769762612291,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9184532121559,0,1.65085738669511,0.693153996902029,0,0,0,0.0752103283492573,0,0,0,0.327543835020193,0.443568258651136,0,0,0,0,0,2.74128883428591,0.496211178389294,0,2.55524855279191,0,0,0,0,0.266107110487916,0,0.857440047187092,0,0,0,0,1.17739639275771,0,0,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,1.14553434272025,0.31020638566432,0,0,0.098150233615243,0,0.647428837187895,0.718639647993729,1.1598144313382,0.971421986118279,0,0,0,0.11294608203896,0,0,1.389134845943,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0.178553938605658,0,14.8446528374961,0,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.75731751132648,0.23806443146374,0.0645889098360061,0.186224142887574,0,0,0.404234377916439,10.2326871511572,3.08009970976753,3.7717149688169,3.01233262649241,1.33064142618405,0,0,0,0,0,0,5.2896503181046,3.32878387092756,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,1.39560233594486,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916853528483988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,25.0810416084469,31.8625064247612,30.8494118250857,26.2499655103098,29.6316043965672,29.1842861506649,29.1235625625955,36.1047495830637,31.549266869604,0,0,0,0,3.80265104465493,0,18.3144871071235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1608175918371,3.43394464837949,0,0,0,0,0.16798212819886,0,0.179117045405697,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29731237272711,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0,0.0852266274161009,0.267096106940212,0.165284915360978,0.384380134730212,1.14851441245126,1.4162089319777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0.670302275535787,0,2.91845782408015,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68426486367398,0,0,0,0,10.2660128437207,10.690728509975,27.3373024868317,0,0,0,0,0,0,0,0,0,0,0,4.49341755736634,0.537063524026827,0,2.86065876347107,0,0,0,0,0,3.9064164162785,0.174919999992391,0,4.43794448313449,12.2041752140528,16.7835254055235,0,0,0,0,0,0,0,0,0,7.7346309098483,9.89908584378083,1.61595542857974,0,0,0,0,2.87101043758728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98104772431402,0.973033209536731,0,0,0,0,0,0.802577647298789,0,0,5.47860933009851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,5.29158946037639,9.05415748436187,0.52418000472609,0,0.677294319023596,0.803982487948041,0.164230914106418,7.75912131907355,0,0.225980740780532,0,0,0,4.69323318563527,0.160317640503067,0,0.999048047910651,0,0,0,0.288109595976299,0,25.2192617039971,0,0,0,0,0,0,0,0,0,0.837847203816763,0,0.717873024576814,0.798716001995964,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.670869375198532,0,0.0524545881349981,0,0,9.78767506329171,0,0,0,0,0,0,0,0,0,0,3.51725360827398,0,0,0,0,14.8011154686501,6.30045734149399,8.96064539068096,5.38510771951354,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0.219284049578707,0,0,0.675769762612291,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9184532121559,0,1.65085738669511,0.693153996902029,0,0,0,0.0752103283492573,0,0,0,0.327543835020193,0.443568258651136,0,0,0,0,0,2.74128883428591,0.496211178389294,0,2.55524855279191,0,0,0,0,0.266107110487916,0,0.857440047187092,0,0,0,0,1.17739639275771,0,0,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,1.14553434272025,0.31020638566432,0,0,0.098150233615243,0,0.647428837187895,0.718639647993729,1.1598144313382,0.971421986118279,0,0,0,0.11294608203896,0,0,1.389134845943,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0.178553938605658,0,14.8446528374961,0,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.75731751132648,0.23806443146374,0.0645889098360061,0.186224142887574,0,0,0.404234377916439,10.2326871511572,3.08009970976753,3.7717149688169,3.01233262649241,1.33064142618405,0,0,0,0,0,0,5.2896503181046,3.32878387092756,0,0 | ||
|short_description=p4@LRRFIP1 | |||
}} | }} |
Latest revision as of 04:35, 16 September 2015
Short description: | p4@LRRFIP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LRRFIP1_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | 0bp_to_ENST00000489295, ENST00000498053_5end |
EntrezGene: | LRRFIP1 |
HGNC: | 6702 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.05e-07 | 253 |
amnion mesenchymal stem cell | 8.91e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.21e-31 | 9 |
respiratory tract | 2.02e-29 | 54 |
respiratory primordium | 1.01e-27 | 38 |
endoderm of foregut | 1.01e-27 | 38 |
respiratory system | 1.16e-27 | 74 |
subdivision of digestive tract | 1.04e-24 | 118 |
foregut | 1.33e-24 | 87 |
upper respiratory tract | 7.33e-24 | 19 |
digestive system | 1.05e-22 | 145 |
digestive tract | 1.05e-22 | 145 |
primitive gut | 1.05e-22 | 145 |
endoderm-derived structure | 2.83e-22 | 160 |
endoderm | 2.83e-22 | 160 |
presumptive endoderm | 2.83e-22 | 160 |
segment of respiratory tract | 2.69e-21 | 47 |
thoracic cavity element | 2.15e-09 | 34 |
thoracic cavity | 2.15e-09 | 34 |
thoracic segment organ | 4.66e-09 | 35 |
thoracic segment of trunk | 5.67e-09 | 52 |
uterine cervix | 7.47e-09 | 6 |
neck of organ | 7.47e-09 | 6 |
organ system subdivision | 7.98e-09 | 223 |
lung | 1.60e-08 | 22 |
respiratory tube | 1.60e-08 | 22 |
respiration organ | 1.60e-08 | 22 |
pair of lungs | 1.60e-08 | 22 |
lung primordium | 1.60e-08 | 22 |
lung bud | 1.60e-08 | 22 |
primordium | 1.87e-07 | 160 |
open tracheal system trachea | 7.17e-07 | 2 |
major salivary gland | 7.86e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.65e-20 | 106 |
squamous cell carcinoma | 1.35e-13 | 14 |
cell type cancer | 4.72e-13 | 143 |
thoracic cancer | 1.36e-07 | 4 |
breast cancer | 1.36e-07 | 4 |