FFCP PHASE1:Hg19::chr17:48796951..48796996,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51747 | |EntrezGene=51747 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24309 | |HGNC=24309 | ||
|TSSclassifier=strong | |||
|UniProt=O95232,C9JL41,D6RDI2,E7EN55,F5H1W9,B4DJ96 | |UniProt=O95232,C9JL41,D6RDI2,E7EN55,F5H1W9,B4DJ96 | ||
|association_with_transcript=0bp_to_ENST00000240304,ENST00000311571,ENST00000393227,ENST00000504563,ENST00000505619,ENST00000506686,ENST00000508218,ENST00000508482,ENST00000509335,ENST00000542316,ENST00000544170,uc002isp.1,uc002isq.2,uc002isr.2,uc002iss.2,uc010wmw.1_5end | |association_with_transcript=0bp_to_ENST00000240304,ENST00000311571,ENST00000393227,ENST00000504563,ENST00000505619,ENST00000506686,ENST00000508218,ENST00000508482,ENST00000509335,ENST00000542316,ENST00000544170,uc002isp.1,uc002isq.2,uc002isr.2,uc002iss.2,uc010wmw.1_5end | ||
|cluster_id=chr17:48796951..48796996,+ | |||
|coexpression_cluster_id=C1724 | |||
|description=CAGE_peak_1_at_LUC7L3_5end | |description=CAGE_peak_1_at_LUC7L3_5end | ||
|id=chr17:48796951..48796996,+ | |id=chr17:48796951..48796996,+ | ||
|ontology_enrichment_celltype=CL:0000542!2.96e-10!53;CL:0000051!2.96e-10!53;CL:0000838!4.03e-10!52;CL:0000037!8.15e-10!172;CL:0000566!8.15e-10!172;CL:0002032!1.29e-08!165;CL:0000837!1.29e-08!165;CL:0000988!3.91e-08!182;CL:0000945!5.11e-07!24;CL:0000826!5.11e-07!24 | |ontology_enrichment_celltype=CL:0000542!2.96e-10!53;CL:0000051!2.96e-10!53;CL:0000838!4.03e-10!52;CL:0000037!8.15e-10!172;CL:0000566!8.15e-10!172;CL:0002032!1.29e-08!165;CL:0000837!1.29e-08!165;CL:0000988!3.91e-08!182;CL:0000945!5.11e-07!24;CL:0000826!5.11e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000945;4.97e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,2.96e-10,53;CL:0000051,2.96e-10,53;CL:0000838,4.03e-10,52;CL:0000037,2.35e-09,168;CL:0002032,3.53e-08,161;CL:0000837,3.53e-08,161;CL:0000988,4.77e-08,177;CL:0000945,5.11e-07,24;CL:0000826,5.11e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!5.03e-18!235;DOID:14566!6.76e-17!239;DOID:0050686!5.64e-11!137;DOID:0050687!8.47e-10!143;DOID:2531!8.41e-09!51;DOID:0060083!8.41e-09!51;DOID:305!1.67e-08!106;DOID:1240!2.34e-08!39;DOID:8692!7.13e-07!31 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.03e-18,235;DOID:14566,6.76e-17,239;DOID:0050686,5.64e-11,137;DOID:0050687,8.47e-10,143;DOID:2531,8.41e-09,51;DOID:0060083,8.41e-09,51;DOID:305,1.67e-08,106;DOID:1240,2.34e-08,39;DOID:8692,7.13e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0001049!6.91e-12!57;UBERON:0005068!6.91e-12!57;UBERON:0006241!6.91e-12!57;UBERON:0007135!6.91e-12!57;UBERON:0000073!2.78e-11!94;UBERON:0001016!2.78e-11!94;UBERON:0002780!3.15e-11!41;UBERON:0001890!3.15e-11!41;UBERON:0006240!3.15e-11!41;UBERON:0001017!8.31e-11!82;UBERON:0003080!1.10e-10!42;UBERON:0005743!1.14e-09!86;UBERON:0000955!2.37e-09!69;UBERON:0006238!2.37e-09!69;UBERON:0002020!3.50e-09!34;UBERON:0003528!3.50e-09!34;UBERON:0002616!1.20e-08!59;UBERON:0002791!3.24e-08!33;UBERON:0001893!4.88e-08!34;UBERON:0001869!9.71e-08!32;UBERON:0007023!4.09e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.98e-08;41!UBERON:0001890;1.98e-08;41!UBERON:0003528;5.01e-08;34!UBERON:0002020;5.01e-08;34!UBERON:0002791;6.53e-08;32!UBERON:0000073;2.47e-07;53!UBERON:0002616;2.47e-07;53!UBERON:0001869;2.72e-07;32!UBERON:0001893;5.63e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.84e-13,89;UBERON:0001049,2.30e-12,56;UBERON:0005068,2.30e-12,56;UBERON:0006241,2.30e-12,56;UBERON:0007135,2.30e-12,56;UBERON:0000073,1.90e-11,53;UBERON:0002616,1.90e-11,53;UBERON:0002780,3.15e-11,41;UBERON:0001890,3.15e-11,41;UBERON:0003080,3.15e-11,41;UBERON:0006240,3.15e-11,41;UBERON:0001017,3.74e-11,81;UBERON:0000955,1.06e-09,68;UBERON:0006238,1.06e-09,68;UBERON:0003528,3.50e-09,34;UBERON:0002020,3.50e-09,34;UBERON:0002791,1.96e-08,32;UBERON:0001893,4.88e-08,34;UBERON:0001869,9.71e-08,32;UBERON:0011216,1.30e-07,223;UBERON:0002346,2.62e-07,86;UBERON:0007023,8.13e-07,114;UBERON:0003075,8.55e-07,82;UBERON:0007284,8.55e-07,82 | |||
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| ||
|short_description=p1@LUC7L3 | |short_description=p1@LUC7L3 | ||
}} | }} |
Latest revision as of 03:50, 16 September 2015
Short description: | p1@LUC7L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LUC7L3_5end |
Coexpression cluster: | C1724_Mast_medulloblastoma_small_non_cerebellum_hepatoblastoma_merkel |
Association with transcript: | 0bp_to_ENST00000240304, ENST00000311571, ENST00000393227, ENST00000504563, ENST00000505619, ENST00000506686, ENST00000508218, ENST00000508482, ENST00000509335, ENST00000542316, ENST00000544170, uc002isp.1, uc002isq.2, uc002isr.2, uc002iss.2, uc010wmw.1_5end |
EntrezGene: | LUC7L3 |
HGNC: | 24309 |
UniProt: | O95232C9JL41D6RDI2E7EN55F5H1W9B4DJ96 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 2.96e-10 | 53 |
common lymphoid progenitor | 2.96e-10 | 53 |
lymphoid lineage restricted progenitor cell | 4.03e-10 | 52 |
hematopoietic stem cell | 2.35e-09 | 168 |
hematopoietic oligopotent progenitor cell | 3.53e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.53e-08 | 161 |
hematopoietic cell | 4.77e-08 | 177 |
lymphocyte of B lineage | 5.11e-07 | 24 |
pro-B cell | 5.11e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.84e-13 | 89 |
neural tube | 2.30e-12 | 56 |
neural rod | 2.30e-12 | 56 |
future spinal cord | 2.30e-12 | 56 |
neural keel | 2.30e-12 | 56 |
regional part of nervous system | 1.90e-11 | 53 |
regional part of brain | 1.90e-11 | 53 |
regional part of forebrain | 3.15e-11 | 41 |
forebrain | 3.15e-11 | 41 |
anterior neural tube | 3.15e-11 | 41 |
future forebrain | 3.15e-11 | 41 |
central nervous system | 3.74e-11 | 81 |
brain | 1.06e-09 | 68 |
future brain | 1.06e-09 | 68 |
brain grey matter | 3.50e-09 | 34 |
gray matter | 3.50e-09 | 34 |
regional part of telencephalon | 1.96e-08 | 32 |
telencephalon | 4.88e-08 | 34 |
cerebral hemisphere | 9.71e-08 | 32 |
organ system subdivision | 1.30e-07 | 223 |
neurectoderm | 2.62e-07 | 86 |
adult organism | 8.13e-07 | 114 |
neural plate | 8.55e-07 | 82 |
presumptive neural plate | 8.55e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.03e-18 | 235 |
disease of cellular proliferation | 6.76e-17 | 239 |
organ system cancer | 5.64e-11 | 137 |
cell type cancer | 8.47e-10 | 143 |
hematologic cancer | 8.41e-09 | 51 |
immune system cancer | 8.41e-09 | 51 |
carcinoma | 1.67e-08 | 106 |
leukemia | 2.34e-08 | 39 |
myeloid leukemia | 7.13e-07 | 31 |