FFCP PHASE1:Hg19::chr11:118955583..118955629,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3145 | |EntrezGene=3145 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4982 | |HGNC=4982 | ||
|TSSclassifier=strong | |||
|UniProt=P08397,F5H4W5,F5H0P4,G3V1P4,F5H4Y7,G5EA58,F5H4X2,F5H226,Q68Y91 | |UniProt=P08397,F5H4W5,F5H0P4,G3V1P4,F5H4Y7,G5EA58,F5H4X2,F5H226,Q68Y91 | ||
|association_with_transcript=0bp_to_ENST00000278715,ENST00000442944,ENST00000535793,ENST00000536813,ENST00000537841,ENST00000542044,ENST00000542729,ENST00000542822,ENST00000543821,ENST00000544387,ENST00000545621,ENST00000545901,ENST00000546302,NM_000190,uc001puz.1,uc001pva.1,uc001pvb.1,uc001pvc.1,uc001pvd.1,uc001pve.1,uc009zao.1,uc009zap.1_5end | |association_with_transcript=0bp_to_ENST00000278715,ENST00000442944,ENST00000535793,ENST00000536813,ENST00000537841,ENST00000542044,ENST00000542729,ENST00000542822,ENST00000543821,ENST00000544387,ENST00000545621,ENST00000545901,ENST00000546302,NM_000190,uc001puz.1,uc001pva.1,uc001pvb.1,uc001pvc.1,uc001pvd.1,uc001pve.1,uc009zao.1,uc009zap.1_5end | ||
|cluster_id=chr11:118955583..118955629,+ | |||
|description=CAGE_peak_1_at_HMBS_5end | |description=CAGE_peak_1_at_HMBS_5end | ||
|id=chr11:118955583..118955629,+ | |id=chr11:118955583..118955629,+ | ||
|ontology_enrichment_celltype=CL:0000548!7.35e-27!679;CL:0000004!7.35e-27!679;CL:0000255!7.35e-27!679;CL:0000012!9.33e-27!682;CL:0002321!5.20e-21!248;CL:0000220!1.50e-20!246;CL:0000066!8.78e-17!254;CL:0000055!1.23e-15!180;CL:0000003!5.45e-15!722;CL:0000144!8.11e-15!625;CL:0000183!9.27e-11!59;CL:0002371!1.75e-10!591;CL:0000393!2.93e-10!60;CL:0000211!2.93e-10!60;CL:0000187!2.75e-09!54;CL:0000680!7.35e-09!57;CL:0000056!7.35e-09!57;CL:0000355!7.35e-09!57;CL:0000221!8.68e-08!71;CL:0000222!2.35e-07!119;CL:0000063!3.95e-07!578;CL:0000192!4.25e-07!42;CL:0000514!4.25e-07!42 | |ontology_enrichment_celltype=CL:0000548!7.35e-27!679;CL:0000004!7.35e-27!679;CL:0000255!7.35e-27!679;CL:0000012!9.33e-27!682;CL:0002321!5.20e-21!248;CL:0000220!1.50e-20!246;CL:0000066!8.78e-17!254;CL:0000055!1.23e-15!180;CL:0000003!5.45e-15!722;CL:0000144!8.11e-15!625;CL:0000183!9.27e-11!59;CL:0002371!1.75e-10!591;CL:0000393!2.93e-10!60;CL:0000211!2.93e-10!60;CL:0000187!2.75e-09!54;CL:0000680!7.35e-09!57;CL:0000056!7.35e-09!57;CL:0000355!7.35e-09!57;CL:0000221!8.68e-08!71;CL:0000222!2.35e-07!119;CL:0000063!3.95e-07!578;CL:0000192!4.25e-07!42;CL:0000514!4.25e-07!42 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.06e-21,250;CL:0000066,9.79e-17,253;CL:0000393,3.05e-10,61;CL:0000211,3.05e-10,61;CL:0000187,2.87e-09,55;CL:0000680,7.52e-09,58;CL:0000056,7.52e-09,58;CL:0000355,7.52e-09,58;CL:0000221,9.10e-08,72;CL:0000222,1.65e-07,121;CL:0000192,4.39e-07,43;CL:0000514,4.39e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.79e-15!235;DOID:14566!2.34e-15!239;DOID:0050687!2.07e-08!143;DOID:305!5.63e-07!106;DOID:2531!6.13e-07!51;DOID:0060083!6.13e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.79e-15,235;DOID:14566,2.33e-15,239;DOID:0050687,2.07e-08,143;DOID:305,5.63e-07,106;DOID:2531,6.13e-07,51;DOID:0060083,6.13e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0003104!2.01e-14!238;UBERON:0009142!2.01e-14!238;UBERON:0002100!2.63e-13!216;UBERON:0005256!1.38e-12!143;UBERON:0004290!2.79e-11!70;UBERON:0000486!1.00e-10!82;UBERON:0000914!3.01e-10!83;UBERON:0002329!3.01e-10!83;UBERON:0003077!3.01e-10!83;UBERON:0003059!3.01e-10!83;UBERON:0007282!3.01e-10!83;UBERON:0009618!3.01e-10!83;UBERON:0007285!3.01e-10!83;UBERON:0001134!2.90e-08!61;UBERON:0002036!2.90e-08!61;UBERON:0003082!2.90e-08!61;UBERON:0000490!4.49e-08!138;UBERON:0002385!1.96e-07!63;UBERON:0001015!1.96e-07!63;UBERON:0000383!1.96e-07!63;UBERON:0000481!4.23e-07!347 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,2.36e-14,199;UBERON:0007503,3.31e-13,78;UBERON:0003104,2.98e-12,160;UBERON:0009142,2.98e-12,160;UBERON:0002329,2.87e-11,71;UBERON:0003059,2.87e-11,71;UBERON:0007282,2.87e-11,71;UBERON:0004290,2.87e-11,71;UBERON:0009618,2.87e-11,71;UBERON:0005256,4.64e-11,122;UBERON:0000486,9.95e-11,83;UBERON:0003077,1.06e-10,72;UBERON:0007285,1.06e-10,72;UBERON:0007524,1.33e-10,73;UBERON:0000490,1.67e-10,148;UBERON:0001134,2.90e-08,62;UBERON:0002036,2.90e-08,62;UBERON:0003082,2.90e-08,62;UBERON:0002385,1.93e-07,64;UBERON:0001015,1.93e-07,64;UBERON:0000383,1.93e-07,64 | |||
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| ||
|short_description=p1@HMBS | |short_description=p1@HMBS | ||
}} | }} |
Latest revision as of 02:46, 16 September 2015
Short description: | p1@HMBS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMBS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000278715, ENST00000442944, ENST00000535793, ENST00000536813, ENST00000537841, ENST00000542044, ENST00000542729, ENST00000542822, ENST00000543821, ENST00000544387, ENST00000545621, ENST00000545901, ENST00000546302, NM_000190, uc001puz.1, uc001pva.1, uc001pvb.1, uc001pvc.1, uc001pvd.1, uc001pve.1, uc009zao.1, uc009zap.1_5end |
EntrezGene: | HMBS |
HGNC: | 4982 |
UniProt: | P08397F5H4W5F5H0P4G3V1P4F5H4Y7G5EA58F5H4X2F5H226Q68Y91 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.06e-21 | 250 |
epithelial cell | 9.79e-17 | 253 |
electrically responsive cell | 3.05e-10 | 61 |
electrically active cell | 3.05e-10 | 61 |
muscle cell | 2.87e-09 | 55 |
muscle precursor cell | 7.52e-09 | 58 |
myoblast | 7.52e-09 | 58 |
multi-potent skeletal muscle stem cell | 7.52e-09 | 58 |
ectodermal cell | 9.10e-08 | 72 |
mesodermal cell | 1.65e-07 | 121 |
smooth muscle cell | 4.39e-07 | 43 |
smooth muscle myoblast | 4.39e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 2.36e-14 | 199 |
epithelial vesicle | 3.31e-13 | 78 |
mesenchyme | 2.98e-12 | 160 |
entire embryonic mesenchyme | 2.98e-12 | 160 |
somite | 2.87e-11 | 71 |
presomitic mesoderm | 2.87e-11 | 71 |
presumptive segmental plate | 2.87e-11 | 71 |
dermomyotome | 2.87e-11 | 71 |
trunk paraxial mesoderm | 2.87e-11 | 71 |
trunk mesenchyme | 4.64e-11 | 122 |
multilaminar epithelium | 9.95e-11 | 83 |
paraxial mesoderm | 1.06e-10 | 72 |
presumptive paraxial mesoderm | 1.06e-10 | 72 |
dense mesenchyme tissue | 1.33e-10 | 73 |
unilaminar epithelium | 1.67e-10 | 148 |
skeletal muscle tissue | 2.90e-08 | 62 |
striated muscle tissue | 2.90e-08 | 62 |
myotome | 2.90e-08 | 62 |
muscle tissue | 1.93e-07 | 64 |
musculature | 1.93e-07 | 64 |
musculature of body | 1.93e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.79e-15 | 235 |
disease of cellular proliferation | 2.33e-15 | 239 |
cell type cancer | 2.07e-08 | 143 |
carcinoma | 5.63e-07 | 106 |
hematologic cancer | 6.13e-07 | 51 |
immune system cancer | 6.13e-07 | 51 |