FFCP PHASE1:Hg19::chr14:75422292..75422308,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5228 | |EntrezGene=5228 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8893 | |HGNC=8893 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000555234,ENST00000556939_5end | |association_with_transcript=0bp_to_ENST00000555234,ENST00000556939_5end | ||
|cluster_id=chr14:75422292..75422308,- | |||
|coexpression_cluster_id=C1203 | |||
|description=CAGE_peak_1_at_PGF_5end | |description=CAGE_peak_1_at_PGF_5end | ||
|id=chr14:75422292..75422308,- | |id=chr14:75422292..75422308,- | ||
|ontology_enrichment_celltype=CL:0000220!1.08e-16!246;CL:0002321!1.63e-16!248;CL:0002139!2.88e-16!24;CL:0000115!1.31e-15!35;CL:0000071!4.72e-13!18;CL:0002546!4.72e-13!18;CL:0002078!9.45e-13!44;CL:0000055!5.12e-08!180;CL:0000222!1.00e-07!119;CL:1000413!1.25e-07!9;CL:0000213!5.12e-07!57;CL:0000215!5.12e-07!57 | |ontology_enrichment_celltype=CL:0000220!1.08e-16!246;CL:0002321!1.63e-16!248;CL:0002139!2.88e-16!24;CL:0000115!1.31e-15!35;CL:0000071!4.72e-13!18;CL:0002546!4.72e-13!18;CL:0002078!9.45e-13!44;CL:0000055!5.12e-08!180;CL:0000222!1.00e-07!119;CL:1000413!1.25e-07!9;CL:0000213!5.12e-07!57;CL:0000215!5.12e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002139;2.38e-17;24!CL:0000115;8.72e-15;36!CL:0000071;6.57e-14;18!CL:0002078;2.60e-09;45!CL:1000413;4.40e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.65e-17,36;CL:0002139,2.55e-17,24;CL:0002321,1.01e-14,250;CL:0000071,7.11e-14,18;CL:0002546,7.11e-14,18;CL:0002078,1.62e-13,45;CL:1000413,4.57e-08,9;CL:0000213,1.10e-07,58;CL:0000215,1.10e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002546;6.57e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.39e-17!312;UBERON:0000483!1.17e-16!309;UBERON:0000467!1.75e-13!625;UBERON:0000468!2.01e-13!659;UBERON:0000480!2.16e-13!626;UBERON:0001986!4.72e-13!18;UBERON:0004638!4.72e-13!18;UBERON:0004852!4.72e-13!18;UBERON:0002049!1.68e-12!79;UBERON:0007798!1.68e-12!79;UBERON:0000475!2.48e-12!365;UBERON:0000477!4.23e-11!286;UBERON:0004872!1.82e-10!84;UBERON:0004111!1.93e-10!241;UBERON:0000055!2.26e-10!69;UBERON:0006914!5.74e-10!25;UBERON:0000490!2.66e-09!138;UBERON:0000487!3.61e-09!22;UBERON:0001009!7.51e-09!113;UBERON:0000481!1.06e-08!347;UBERON:0003914!2.15e-08!118;UBERON:0004535!2.37e-08!110;UBERON:0001981!2.42e-08!60;UBERON:0007500!2.42e-08!60;UBERON:0004537!2.42e-08!60;UBERON:0006965!2.42e-08!60;UBERON:0003102!2.62e-08!95;UBERON:0003915!1.25e-07!9;UBERON:0004700!1.25e-07!9;UBERON:0001917!1.25e-07!9;UBERON:0000922!3.30e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.57e-14;18!UBERON:0001986;6.57e-14;18!UBERON:0004852;6.57e-14;18!UBERON:0006914;1.18e-10;25!UBERON:0000487;7.44e-10;22!UBERON:0000490;9.93e-10;33!UBERON:0003915;4.40e-08;9!UBERON:0004700;4.40e-08;9!UBERON:0001917;4.40e-08;9!UBERON:0010371;1.79e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,8.56e-15,309;UBERON:0000483,6.46e-14,306;UBERON:0004638,7.11e-14,18;UBERON:0001986,7.11e-14,18;UBERON:0004852,7.11e-14,18;UBERON:0002049,7.00e-13,78;UBERON:0007798,7.00e-13,78;UBERON:0004872,4.90e-11,83;UBERON:0006914,8.41e-11,25;UBERON:0000055,1.17e-10,68;UBERON:0000487,5.99e-10,22;UBERON:0001009,6.36e-10,112;UBERON:0004111,2.22e-09,240;UBERON:0004535,2.24e-09,109;UBERON:0007500,6.48e-09,59;UBERON:0001981,6.48e-09,59;UBERON:0004537,6.48e-09,59;UBERON:0006965,6.48e-09,59;UBERON:0000490,8.98e-09,148;UBERON:0003102,9.35e-09,99;UBERON:0003914,1.69e-08,117;UBERON:0003915,4.57e-08,9;UBERON:0004700,4.57e-08,9;UBERON:0001917,4.57e-08,9;UBERON:0000033,6.84e-07,56 | |||
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| ||
|short_description=p1@PGF | |short_description=p1@PGF | ||
}} | }} |
Latest revision as of 01:56, 16 September 2015
Short description: | p1@PGF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGF_5end |
Coexpression cluster: | C1203_Endothelial_placenta_choriocarcinoma_Renal_Hair_Fibroblast_Myoblast |
Association with transcript: | 0bp_to_ENST00000555234, ENST00000556939_5end |
EntrezGene: | PGF |
HGNC: | 8893 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.65e-17 | 36 |
endothelial cell of vascular tree | 2.55e-17 | 24 |
embryonic cell | 1.01e-14 | 250 |
blood vessel endothelial cell | 7.11e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.11e-14 | 18 |
meso-epithelial cell | 1.62e-13 | 45 |
endothelial cell of artery | 4.57e-08 | 9 |
lining cell | 1.10e-07 | 58 |
barrier cell | 1.10e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
cell layer | 8.56e-15 | 309 |
epithelium | 6.46e-14 | 306 |
blood vessel endothelium | 7.11e-14 | 18 |
endothelium | 7.11e-14 | 18 |
cardiovascular system endothelium | 7.11e-14 | 18 |
vasculature | 7.00e-13 | 78 |
vascular system | 7.00e-13 | 78 |
splanchnic layer of lateral plate mesoderm | 4.90e-11 | 83 |
squamous epithelium | 8.41e-11 | 25 |
vessel | 1.17e-10 | 68 |
simple squamous epithelium | 5.99e-10 | 22 |
circulatory system | 6.36e-10 | 112 |
anatomical conduit | 2.22e-09 | 240 |
cardiovascular system | 2.24e-09 | 109 |
epithelial tube open at both ends | 6.48e-09 | 59 |
blood vessel | 6.48e-09 | 59 |
blood vasculature | 6.48e-09 | 59 |
vascular cord | 6.48e-09 | 59 |
unilaminar epithelium | 8.98e-09 | 148 |
surface structure | 9.35e-09 | 99 |
epithelial tube | 1.69e-08 | 117 |
endothelial tube | 4.57e-08 | 9 |
arterial system endothelium | 4.57e-08 | 9 |
endothelium of artery | 4.57e-08 | 9 |
head | 6.84e-07 | 56 |