FFCP PHASE1:Hg19::chr19:13227173..13227192,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55621 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25980 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NXH9 | |||
|association_with_transcript=20bp_to_AF196479_5end | |||
|cluster_id=chr19:13227173..13227192,- | |||
|description=CAGE_peak_3_at_TRMT1_5end | |||
|id=chr19:13227173..13227192,- | |||
|ontology_enrichment_celltype=CL:0000012!4.54e-17!682;CL:0000144!5.19e-17!625;CL:0000003!2.55e-16!722;CL:0000222!3.39e-16!119;CL:0000548!4.34e-16!679;CL:0000004!4.34e-16!679;CL:0000255!4.34e-16!679;CL:0002371!9.75e-14!591;CL:0000680!2.15e-13!57;CL:0000056!2.15e-13!57;CL:0000355!2.15e-13!57;CL:0000183!1.92e-12!59;CL:0000187!2.60e-12!54;CL:0002321!4.97e-12!248;CL:0000055!5.51e-12!180;CL:0000192!6.62e-12!42;CL:0000514!6.62e-12!42;CL:0000359!6.76e-12!32;CL:0000220!9.15e-12!246;CL:0000393!1.07e-11!60;CL:0000211!1.07e-11!60;CL:0002139!1.03e-07!24;CL:0002539!6.71e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.83e-15;32!CL:0000192;7.01e-10;43!CL:0002539;1.82e-09;10!CL:0002139;7.37e-09;24!CL:0000187;4.22e-08;55!CL:0000071;2.22e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.34e-18,121;CL:0000359,2.10e-16,32;CL:0000680,7.17e-14,58;CL:0000056,7.17e-14,58;CL:0000355,7.17e-14,58;CL:0000192,1.57e-13,43;CL:0000514,1.57e-13,43;CL:0000187,5.54e-13,55;CL:0000393,1.95e-12,61;CL:0000211,1.95e-12,61;CL:0002321,1.15e-10,250;CL:0002539,1.36e-09,10;CL:0002139,6.96e-09,24;CL:0000115,4.57e-08,36;CL:0000071,1.06e-07,18;CL:0002546,1.06e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000514;7.01e-10;43!CL:0000355;6.63e-08;58!CL:0002546;2.22e-07;18 | |||
|ontology_enrichment_disease=DOID:2531!5.75e-07!51;DOID:0060083!5.75e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001981!7.30e-17!60;UBERON:0007500!7.30e-17!60;UBERON:0004537!7.30e-17!60;UBERON:0006965!7.30e-17!60;UBERON:0001637!9.19e-17!42;UBERON:0003509!9.19e-17!42;UBERON:0004572!9.19e-17!42;UBERON:0000055!1.74e-16!69;UBERON:0004573!8.12e-14!33;UBERON:0004571!8.12e-14!33;UBERON:0004872!1.31e-13!84;UBERON:0002049!1.44e-13!79;UBERON:0007798!1.44e-13!79;UBERON:0004290!3.57e-12!70;UBERON:0001134!5.88e-12!61;UBERON:0002036!5.88e-12!61;UBERON:0003082!5.88e-12!61;UBERON:0000486!2.60e-11!82;UBERON:0002385!7.75e-11!63;UBERON:0001015!7.75e-11!63;UBERON:0000383!7.75e-11!63;UBERON:0000914!1.11e-10!83;UBERON:0002329!1.11e-10!83;UBERON:0003077!1.11e-10!83;UBERON:0003059!1.11e-10!83;UBERON:0007282!1.11e-10!83;UBERON:0009618!1.11e-10!83;UBERON:0007285!1.11e-10!83;UBERON:0003914!3.47e-10!118;UBERON:0004535!7.93e-10!110;UBERON:0000490!1.27e-09!138;UBERON:0001009!8.50e-09!113;UBERON:0000947!1.83e-08!21;UBERON:0010191!1.83e-08!21;UBERON:0004237!6.71e-07!10;UBERON:0004695!6.71e-07!10;UBERON:0002111!6.71e-07!10;UBERON:0004178!6.71e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.51e-17;33!UBERON:0004571;2.51e-17;33!UBERON:0001637;1.02e-16;42!UBERON:0003509;1.02e-16;42!UBERON:0004572;1.02e-16;42!UBERON:0007500;5.52e-13;56!UBERON:0001981;5.52e-13;56!UBERON:0004537;5.52e-13;56!UBERON:0000947;8.52e-12;21!UBERON:0010191;8.52e-12;21!UBERON:0003914;4.15e-10;74!UBERON:0000055;6.13e-10;65!UBERON:0004237;1.82e-09;10!UBERON:0004695;1.82e-09;10!UBERON:0002111;1.82e-09;10!UBERON:0004178;1.82e-09;10!UBERON:0002049;4.05e-08;75!UBERON:0007798;4.05e-08;75!UBERON:0004638;2.22e-07;18!UBERON:0001986;2.22e-07;18!UBERON:0004852;2.22e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,6.06e-24,42;UBERON:0003509,6.06e-24,42;UBERON:0004572,6.06e-24,42;UBERON:0007500,3.82e-21,59;UBERON:0001981,3.82e-21,59;UBERON:0004537,3.82e-21,59;UBERON:0006965,3.82e-21,59;UBERON:0000055,8.01e-21,68;UBERON:0004573,3.13e-19,33;UBERON:0004571,3.13e-19,33;UBERON:0002049,4.54e-18,78;UBERON:0007798,4.54e-18,78;UBERON:0004872,7.92e-17,83;UBERON:0004535,1.35e-15,109;UBERON:0001009,9.58e-15,112;UBERON:0007503,9.41e-14,78;UBERON:0003914,2.45e-13,117;UBERON:0002329,2.36e-12,71;UBERON:0003059,2.36e-12,71;UBERON:0007282,2.36e-12,71;UBERON:0004290,2.36e-12,71;UBERON:0009618,2.36e-12,71;UBERON:0001134,2.67e-12,62;UBERON:0002036,2.67e-12,62;UBERON:0003082,2.67e-12,62;UBERON:0003077,5.00e-12,72;UBERON:0007285,5.00e-12,72;UBERON:0000947,7.56e-12,21;UBERON:0010191,7.56e-12,21;UBERON:0007524,1.04e-11,73;UBERON:0002385,1.35e-11,64;UBERON:0001015,1.35e-11,64;UBERON:0000383,1.35e-11,64;UBERON:0000486,1.08e-09,83;UBERON:0004237,1.36e-09,10;UBERON:0004695,1.36e-09,10;UBERON:0002111,1.36e-09,10;UBERON:0004178,1.36e-09,10;UBERON:0000490,2.53e-09,148;UBERON:0004638,1.06e-07,18;UBERON:0001986,1.06e-07,18;UBERON:0004852,1.06e-07,18 | |||
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| |||
|short_description=p3@TRMT1 | |||
}} |
Latest revision as of 00:15, 16 September 2015
Short description: | p3@TRMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRMT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_AF196479_5end |
EntrezGene: | TRMT1 |
HGNC: | 25980 |
UniProt: | Q9NXH9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.34e-18 | 121 |
vascular associated smooth muscle cell | 2.10e-16 | 32 |
muscle precursor cell | 7.17e-14 | 58 |
myoblast | 7.17e-14 | 58 |
multi-potent skeletal muscle stem cell | 7.17e-14 | 58 |
smooth muscle cell | 1.57e-13 | 43 |
smooth muscle myoblast | 1.57e-13 | 43 |
muscle cell | 5.54e-13 | 55 |
electrically responsive cell | 1.95e-12 | 61 |
electrically active cell | 1.95e-12 | 61 |
embryonic cell | 1.15e-10 | 250 |
aortic smooth muscle cell | 1.36e-09 | 10 |
endothelial cell of vascular tree | 6.96e-09 | 24 |
endothelial cell | 4.57e-08 | 36 |
blood vessel endothelial cell | 1.06e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.06e-07 | 18 |