FFCP PHASE1:Hg19::chr17:48264220..48264260,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-46bp_to_ENST00000510710_5end | |association_with_transcript=-46bp_to_ENST00000510710_5end | ||
|cluster_id=chr17:48264220..48264260,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_16_at_COL1A1_5end | |description=CAGE_peak_16_at_COL1A1_5end | ||
|id=chr17:48264220..48264260,- | |id=chr17:48264220..48264260,- | ||
|ontology_enrichment_celltype=CL:0000055!7.08e-41!180;CL:0000057!1.47e-24!75;CL:0000183!4.18e-16!59;CL:0000680!9.28e-16!57;CL:0000056!9.28e-16!57;CL:0000355!9.28e-16!57;CL:0000187!4.28e-15!54;CL:0000393!6.90e-14!60;CL:0000211!6.90e-14!60;CL:0000192!2.09e-11!42;CL:0000514!2.09e-11!42;CL:0000048!5.28e-11!430;CL:0000723!3.23e-10!436;CL:0000034!7.01e-10!444;CL:0002620!2.69e-09!23;CL:0002371!7.09e-09!591;CL:0000144!1.38e-08!625;CL:0000359!2.31e-08!32;CL:0002334!3.79e-08!12;CL:0000222!1.29e-07!119;CL:0000499!2.57e-07!27 | |ontology_enrichment_celltype=CL:0000055!7.08e-41!180;CL:0000057!1.47e-24!75;CL:0000183!4.18e-16!59;CL:0000680!9.28e-16!57;CL:0000056!9.28e-16!57;CL:0000355!9.28e-16!57;CL:0000187!4.28e-15!54;CL:0000393!6.90e-14!60;CL:0000211!6.90e-14!60;CL:0000192!2.09e-11!42;CL:0000514!2.09e-11!42;CL:0000048!5.28e-11!430;CL:0000723!3.23e-10!436;CL:0000034!7.01e-10!444;CL:0002620!2.69e-09!23;CL:0002371!7.09e-09!591;CL:0000144!1.38e-08!625;CL:0000359!2.31e-08!32;CL:0002334!3.79e-08!12;CL:0000222!1.29e-07!119;CL:0000499!2.57e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000134;1.02e-10;55!CL:0000057;4.37e-10;73!CL:0000187;5.57e-10;55!CL:0002320;8.64e-10;188!CL:0000723;1.92e-09;61!CL:0000048;1.96e-09;58!CL:0002334;3.14e-09;12!CL:0000192;3.43e-09;43!CL:0002620;3.69e-09;23!CL:0000359;3.93e-08;32!CL:0000393;5.08e-08;61!CL:0000211;5.08e-08;61!CL:0000499;7.10e-08;28!CL:0002494;1.51e-07;16!CL:0000327;1.88e-07;15!CL:0002570;8.05e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.14e-27,76;CL:0000048,1.07e-17,427;CL:0000680,1.53e-17,58;CL:0000056,1.53e-17,58;CL:0000355,1.53e-17,58;CL:0000187,9.18e-17,55;CL:0000723,1.23e-16,433;CL:0000034,2.76e-15,441;CL:0000393,4.18e-14,61;CL:0000211,4.18e-14,61;CL:0000192,1.76e-12,43;CL:0000514,1.76e-12,43;CL:0002334,2.91e-09,12;CL:0002620,3.53e-09,23;CL:0002320,7.47e-09,361;CL:0000359,1.95e-08,32;CL:0000499,7.27e-08,28;CL:0000222,1.16e-07,121;CL:0002494,1.50e-07,16;CL:0000327,2.03e-07,15;CL:0000134,2.41e-07,354;CL:0002570,8.05e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000355;6.11e-10;58!CL:0000514;3.43e-09;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;8.65e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.96e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.80e-18!83;UBERON:0002329!1.80e-18!83;UBERON:0003077!1.80e-18!83;UBERON:0003059!1.80e-18!83;UBERON:0007282!1.80e-18!83;UBERON:0009618!1.80e-18!83;UBERON:0007285!1.80e-18!83;UBERON:0004290!8.50e-17!70;UBERON:0001134!2.52e-16!61;UBERON:0002036!2.52e-16!61;UBERON:0003082!2.52e-16!61;UBERON:0002385!7.18e-16!63;UBERON:0001015!7.18e-16!63;UBERON:0000383!7.18e-16!63;UBERON:0005256!1.53e-14!143;UBERON:0000486!1.99e-13!82;UBERON:0002100!1.08e-09!216;UBERON:0004872!3.40e-09!84;UBERON:0002199!5.14e-08!45;UBERON:0002416!5.14e-08!45;UBERON:0001013!8.18e-08!14;UBERON:0003102!2.92e-07!95;UBERON:0000475!2.94e-07!365;UBERON:0000490!4.97e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.66e-09;198!UBERON:0002385;4.02e-08;31!UBERON:0001015;4.02e-08;31!UBERON:0000383;4.02e-08;31!UBERON:0001013;4.46e-08;14!UBERON:0002204;6.45e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,8.19e-18,62;UBERON:0002036,8.19e-18,62;UBERON:0003082,8.19e-18,62;UBERON:0007503,1.27e-17,78;UBERON:0007524,1.60e-17,73;UBERON:0002385,1.96e-17,64;UBERON:0001015,1.96e-17,64;UBERON:0000383,1.96e-17,64;UBERON:0002329,2.24e-17,71;UBERON:0003059,2.24e-17,71;UBERON:0007282,2.24e-17,71;UBERON:0004290,2.24e-17,71;UBERON:0009618,2.24e-17,71;UBERON:0003077,7.35e-17,72;UBERON:0007285,7.35e-17,72;UBERON:0000486,9.62e-14,83;UBERON:0005256,8.30e-13,122;UBERON:0003104,1.35e-12,160;UBERON:0009142,1.35e-12,160;UBERON:0002384,4.42e-09,371;UBERON:0000926,4.84e-09,315;UBERON:0004120,4.84e-09,315;UBERON:0006603,4.84e-09,315;UBERON:0002199,6.63e-09,46;UBERON:0002416,6.63e-09,46;UBERON:0001013,4.36e-08,14;UBERON:0004872,4.44e-08,83;UBERON:0002097,6.04e-07,41;UBERON:0000948,7.91e-07,24;UBERON:0005498,7.91e-07,24;UBERON:0004140,7.91e-07,24;UBERON:0009881,7.91e-07,24;UBERON:0004141,7.91e-07,24;UBERON:0003084,7.91e-07,24;UBERON:0007005,7.91e-07,24;UBERON:0004139,7.91e-07,24;UBERON:0004291,7.91e-07,24 | |||
|phase1_expression=23.9815460637135,27.8330681058278,35.9433730444726,19.0139266870948,27.2646267600646,12.2127393374052,65.8579683237607,5.68547886084148,1.56711376919903,0.737201809504527,1.39560233594486,2.40285509343189,8.96807725976742,6.93091576576261,3.97676850873499,3.36162573225888,2.41077811209591,4.38186054232424,2.43966399395253,6.89477925230012,7.34402488479311,8.14982275843028,0,0.958120975510189,1.25542639594803,0.0764134057479513,0,0.0787107813136792,0,0,1.08371286321253,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.3806866313962,5.36560687762909,6.13740296848946,14.0961269429981,22.0588680679791,21.8718243630844,53.2841584524236,20.9252994230133,1.22895262313288,4.43458794925128,4.56740885604255,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0,0,0,0,0,0.549605231791222,0,0,0,46.2183915076646,14.8157698647558,4.50191214764944,82.0352735341607,20.2160977853064,8.41016400213461,8.5399196583764,38.9734726499113,3.42332138939743,3.3677668017422,3.10577615915572,16.8006744685874,12.09969441408,1.64025002283658,1.87296046098192,1.71141546463335,1.79338416662161,0.822041490506354,0.647491777472526,1.26405726032024,1.83738754129404,2.21101771161182,2.6864703105699,40.3920971475898,55.1405252291182,22.7540340484507,22.9957805381196,0.841680569770331,1.62654075833553,0.554128230968366,10.5354629011401,21.7606335017304,16.6764245386322,2.60894021268048,17.0420153904419,24.1319849364981,19.2858030055201,20.4061945337394,12.7785136255664,21.3841648237872,14.1448810812008,19.0717255432631,14.1283657483738,9.59248342127635,15.1882332759794,17.4577741364317,24.850671476163,6.54888638479662,6.10418132317755,0,0.818238361772504,0,0.365921118388786,0,0.69716365721711,0.310983165046111,0.756962552626885,0,1.56449532329816,12.8648187638577,0,5.10804720835177,5.0531563716871,0.236613600079688,0,0.241011029883482,0.110293972732394,0,0,0,0,0,0.738155454624648,7.01208869017229,19.3439785325758,32.3419165048192,0,0,0.590789906681404,0,0,3.77449182656756,0.219500570817251,0,0,0,1.3032332212413,1.03993478527958,2.88662684050547,0.34779121492523,5.28339124061197,0.433099343283221,0,0,0,0,0,0,0,0,1.17587489739202,0.141775097242386,0,0,0.383382679165211,0,0,0,0.288239906833923,0.12624243342638,0.063497894292169,0,0,0,0.925447434329912,0,0,4.26098120512371,6.10344096366592,4.400297149257,10.0831938291067,57.2250313363012,18.596660556232,18.6156681609409,12.4808924293639,3.60090323966999,2.83698264046557,2.1313774321288,28.5955987316295,66.7424574631475,13.1718453884923,7.81766842304964,11.727934308504,7.91951872933429,2.1100756394171,1.74306691720059,1.3996218765488,0,0,0,21.805861849734,28.7154839585285,5.70547620162874,3.18518874668674,6.1642896765115,1.79060963239896,0,0,0,0,0,0,0,0.502548796003046,0,0,0,0,5.03035116048474,12.0040925054323,1.89885516589815,85.6839949506925,96.3516539504674,49.6762607356894,17.1026465889361,15.9501432855691,22.7407504055985,12.4167685551006,12.6202863721733,15.8557484945865,6.95068915744663,22.3213319507524,21.6180357000839,0,0,0,2.12189300012382,24.9653159265746,16.6314661331324,39.6972492510043,15.8065832486704,72.410304363733,42.2859192543813,19.4448754645347,58.8725351385603,13.3576259800492,8.78995254675137,22.9054625653934,4.68124789278712,12.4621063004069,6.15915005837784,0,0.601519410909855,0,11.2518159201315,17.2986609606381,18.7507913391977,0,0,0.784349769176855,1.46139224653261,0.211103257785751,0,0,1.0795795805107,7.71136263451447,3.79325012561394,5.01689773854853,0,0,0.223874754722178,0,0,0,0,0,0.618246069886334,2.7470839445503,1.98022799809411,1.72279661398852,1.95018073810956,24.1025894766239,5.51023094265095,1.69453478826109,2.14905144616581,2.34322173223702,6.01553371262332,7.54086808353988,2.72725207731523,35.3457181517547,0.330569830721956,0.768760269460425,0.382838137483752,0.6069466851333,9.761756535243,57.6106594700071,1.3940745403212,7.39280592422613,2.12922412126809,0.869932992075073,2.7798632865588,0.858749320451947,2.97726695487734,5.69482964493707,9.53150969619124,7.67693373934002,8.55877976067841,2.54562598340749,9.41938368239076,5.93579110024939,15.099536635483,7.53999375012393,1.81964233415984,6.34041284692033,2.94880919367287,10.2403085208814,7.55511817856982,0,9.41849388715102,30.9677895978631,7.910568163417,8.27048015319186,3.3171948762061,1.31535265576129,10.4179596168004,10.4943160327461,4.46402829317949,2.16876448669825,5.63391205064483,4.01551786171344,10.4143983473908,2.49669736036875,0,10.9775970354785,10.5374365747169,2.65631221636001,4.54915136318478,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0.284136146806413,0,1.18785872333055,0.307160702099232,0,0,0,0,0,2.19172787076177,0,0,0.102268682502155,0,27.0604441265772,0,0,0,0.690503839458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| ||
|short_description=p16@COL1A1 | |short_description=p16@COL1A1 | ||
}} | }} |
Latest revision as of 00:03, 16 September 2015
Short description: | p16@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -46bp_to_ENST00000510710_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.14e-27 | 76 |
multi fate stem cell | 1.07e-17 | 427 |
muscle precursor cell | 1.53e-17 | 58 |
myoblast | 1.53e-17 | 58 |
multi-potent skeletal muscle stem cell | 1.53e-17 | 58 |
muscle cell | 9.18e-17 | 55 |
somatic stem cell | 1.23e-16 | 433 |
stem cell | 2.76e-15 | 441 |
electrically responsive cell | 4.18e-14 | 61 |
electrically active cell | 4.18e-14 | 61 |
smooth muscle cell | 1.76e-12 | 43 |
smooth muscle myoblast | 1.76e-12 | 43 |
preadipocyte | 2.91e-09 | 12 |
skin fibroblast | 3.53e-09 | 23 |
connective tissue cell | 7.47e-09 | 361 |
vascular associated smooth muscle cell | 1.95e-08 | 32 |
stromal cell | 7.27e-08 | 28 |
mesodermal cell | 1.16e-07 | 121 |
cardiocyte | 1.50e-07 | 16 |
extracellular matrix secreting cell | 2.03e-07 | 15 |
mesenchymal cell | 2.41e-07 | 354 |
mesenchymal stem cell of adipose | 8.05e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.96e-07 | 14 |