FFCP PHASE1:Hg19::chr2:234590530..234590553,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54577 | |EntrezGene=54577 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12539 | |HGNC=12539 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HAW7,Q5DSZ7 | |UniProt=Q9HAW7,Q5DSZ7 | ||
|association_with_transcript=-30bp_to_ENST00000373426,NM_019077,uc002vut.2,uc010zmx.1_5end | |association_with_transcript=-30bp_to_ENST00000373426,NM_019077,uc002vut.2,uc010zmx.1_5end | ||
|cluster_id=chr2:234590530..234590553,+ | |||
|coexpression_cluster_id=C60 | |||
|description=CAGE_peak_1_at_UGT1A7_5end | |description=CAGE_peak_1_at_UGT1A7_5end | ||
|id=chr2:234590530..234590553,+ | |id=chr2:234590530..234590553,+ | ||
|ontology_enrichment_celltype=CL:0002150!3.65e-11!3;CL:0000861!3.65e-11!3;CL:0001014!9.03e-08!2;CL:0001016!9.03e-08!2;CL:0000066!4.72e-07!254 | |ontology_enrichment_celltype=CL:0002150!3.65e-11!3;CL:0000861!3.65e-11!3;CL:0001014!9.03e-08!2;CL:0001016!9.03e-08!2;CL:0000066!4.72e-07!254 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.81e-39;29!UBERON:0009143;8.62e-12;1!UBERON:0006595;1.19e-09;86 | |||
|ontology_enrichment_disease=DOID:305!4.28e-10!106;DOID:0050687!1.44e-08!143 | |ontology_enrichment_disease=DOID:305!4.28e-10!106;DOID:0050687!1.44e-08!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.48e-11,106;DOID:0050687,4.33e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.19e-31!9;UBERON:0001557!3.83e-25!19;UBERON:0000072!3.28e-12!46;UBERON:0000065!3.74e-10!53;UBERON:0001041!2.14e-09!98;UBERON:0004921!2.70e-09!129;UBERON:0004185!2.70e-09!129;UBERON:0008947!3.44e-09!38;UBERON:0003258!3.44e-09!38;UBERON:0001004!8.61e-09!72;UBERON:0001007!1.47e-07!155;UBERON:0001555!1.47e-07!155;UBERON:0007026!1.47e-07!155;UBERON:0000077!1.69e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;9.17e-87;9!UBERON:0001557;9.17e-87;9!UBERON:0000072;1.69e-26;37!UBERON:0000065;5.82e-21;44!UBERON:0001723;1.15e-14;3!UBERON:0001033;1.15e-14;3!UBERON:0002372;9.57e-12;1!UBERON:0001961;9.57e-12;1!UBERON:0001744;9.57e-12;1!UBERON:0001042;9.57e-12;1!UBERON:0001735;9.57e-12;1!UBERON:0001004;1.28e-11;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.47e-87,9;UBERON:0001557,3.12e-73,19;UBERON:0000072,2.62e-39,47;UBERON:0000065,5.93e-34,54;UBERON:0008947,8.69e-30,38;UBERON:0003258,8.69e-30,38;UBERON:0001041,6.01e-27,87;UBERON:0001004,3.18e-24,74;UBERON:0004921,4.55e-19,118;UBERON:0001007,4.27e-15,145;UBERON:0001555,4.27e-15,145;UBERON:0007026,4.27e-15,145;UBERON:0001723,1.15e-14,3;UBERON:0001033,1.15e-14,3;UBERON:0010056,1.15e-14,3;UBERON:0004119,1.84e-13,160;UBERON:0000925,1.84e-13,160;UBERON:0006595,1.84e-13,160;UBERON:0002372,9.57e-12,1;UBERON:0001961,9.57e-12,1;UBERON:0001744,9.57e-12,1;UBERON:0001735,9.57e-12,1;UBERON:0001042,7.53e-10,10;UBERON:0009145,7.53e-10,10;UBERON:0006562,5.33e-09,11;UBERON:0011216,8.12e-09,223 | |||
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| ||
|short_description=p1@UGT1A7 | |short_description=p1@UGT1A7 | ||
}} | }} |
Latest revision as of 23:25, 15 September 2015
Short description: | p1@UGT1A7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UGT1A7_5end |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | -30bp_to_ENST00000373426, NM_019077, uc002vut.2, uc010zmx.1_5end |
EntrezGene: | UGT1A7 |
HGNC: | 12539 |
UniProt: | Q9HAW7Q5DSZ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 6.47e-87 | 9 |
upper respiratory tract | 3.12e-73 | 19 |
segment of respiratory tract | 2.62e-39 | 47 |
respiratory tract | 5.93e-34 | 54 |
respiratory primordium | 8.69e-30 | 38 |
endoderm of foregut | 8.69e-30 | 38 |
foregut | 6.01e-27 | 87 |
respiratory system | 3.18e-24 | 74 |
subdivision of digestive tract | 4.55e-19 | 118 |
digestive system | 4.27e-15 | 145 |
digestive tract | 4.27e-15 | 145 |
primitive gut | 4.27e-15 | 145 |
tongue | 1.15e-14 | 3 |
gustatory system | 1.15e-14 | 3 |
future tongue | 1.15e-14 | 3 |
endoderm-derived structure | 1.84e-13 | 160 |
endoderm | 1.84e-13 | 160 |
presumptive endoderm | 1.84e-13 | 160 |
tonsil | 9.57e-12 | 1 |
mucosa-associated lymphoid tissue | 9.57e-12 | 1 |
lymphoid tissue | 9.57e-12 | 1 |
tonsillar ring | 9.57e-12 | 1 |
chordate pharynx | 7.53e-10 | 10 |
pharyngeal region of foregut | 7.53e-10 | 10 |
pharynx | 5.33e-09 | 11 |
organ system subdivision | 8.12e-09 | 223 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.48e-11 | 106 |
cell type cancer | 4.33e-08 | 143 |