FFCP PHASE1:Hg19::chr4:146404160..146404186,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:146404160..146404186,+
|short_description=p13@SMAD1
|description=CAGE_peak_13_at_SMAD1_5end
|association_with_transcript=195bp_to_ENST00000514168_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4086 | |EntrezGene=4086 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6767 | |HGNC=6767 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=195bp_to_ENST00000514168_5end | |||
|cluster_id=chr4:146404160..146404186,+ | |||
|coexpression_cluster_id=C4376 | |||
|description=CAGE_peak_13_at_SMAD1_5end | |||
|id=chr4:146404160..146404186,+ | |||
|ontology_enrichment_celltype=CL:0002139!5.57e-29!24;CL:0000071!2.01e-20!18;CL:0002546!2.01e-20!18;CL:0000115!3.64e-19!35;CL:0002078!6.41e-15!44;CL:1000413!5.01e-14!9;CL:0000213!9.33e-12!57;CL:0000215!9.33e-12!57;CL:0005020!3.05e-10!6;CL:0002138!3.05e-10!6;CL:0005022!3.05e-10!6;CL:0002544!3.61e-10!6;CL:0000128!7.55e-07!7;CL:0000126!7.55e-07!7;CL:0000127!7.55e-07!7;CL:0002453!7.55e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.05e-68;24!CL:0002138;3.87e-39;6!CL:0000115;8.22e-38;36!CL:0000071;8.95e-36;18!CL:0002544;7.36e-28;6!CL:0002078;8.42e-27;45!CL:1000413;1.53e-18;9!CL:0000213;1.20e-15;58!CL:0000215;1.20e-15;58!CL:0002543;1.64e-10;6!CL:0002144;1.75e-10;3!CL:0000817;2.04e-08;1!CL:0000076;5.42e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.85e-68,24;CL:0000115,2.47e-44,36;CL:0005020,2.20e-39,6;CL:0002138,2.20e-39,6;CL:0005022,2.20e-39,6;CL:0000071,1.18e-35,18;CL:0002546,1.18e-35,18;CL:0002078,7.67e-35,45;CL:0002544,8.97e-28,6;CL:0000213,2.51e-26,58;CL:0000215,2.51e-26,58;CL:1000413,1.75e-18,9;CL:0000222,2.88e-14,121;CL:0002144,1.75e-10,3;CL:0002543,1.87e-10,6;CL:0000076,5.58e-09,63;CL:0002321,1.45e-07,250 | |||
|ontology_enrichment_development_v019=CL:0005022;3.87e-39;6!CL:0002546;8.95e-36;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.01e-20!18;UBERON:0004638!2.01e-20!18;UBERON:0004852!2.01e-20!18;UBERON:0000487!1.05e-15!22;UBERON:0006914!7.35e-15!25;UBERON:0003915!5.01e-14!9;UBERON:0004700!5.01e-14!9;UBERON:0001917!5.01e-14!9;UBERON:0002465!2.26e-09!10;UBERON:0000055!8.79e-08!69;UBERON:0001473!2.32e-07!8;UBERON:0004536!2.32e-07!8;UBERON:0006558!2.32e-07!8;UBERON:0002049!4.65e-07!79;UBERON:0007798!4.65e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.95e-36;18!UBERON:0001986;8.95e-36;18!UBERON:0004852;8.95e-36;18!UBERON:0001473;2.90e-29;8!UBERON:0004536;2.90e-29;8!UBERON:0006558;2.90e-29;8!UBERON:0000487;5.72e-29;22!UBERON:0006914;2.72e-25;25!UBERON:0002465;2.49e-23;10!UBERON:0003915;1.53e-18;9!UBERON:0004700;1.53e-18;9!UBERON:0001917;1.53e-18;9!UBERON:0000490;1.04e-17;33!UBERON:0000055;1.64e-15;65!UBERON:0002370;4.88e-15;2!UBERON:0005058;4.88e-15;2!UBERON:0009113;4.88e-15;2!UBERON:0002405;8.98e-15;27!UBERON:0000947;5.80e-11;21!UBERON:0010191;5.80e-11;21!UBERON:0010523;1.75e-10;3!UBERON:0001915;1.75e-10;3!UBERON:0001982;1.75e-10;3!UBERON:0002049;1.55e-09;75!UBERON:0007798;1.55e-09;75!UBERON:0004535;2.89e-08;109!UBERON:0007029;2.90e-08;1!UBERON:0002426;2.90e-08;1!UBERON:0003831;2.90e-08;1!UBERON:0003898;2.90e-08;1!UBERON:0004830;2.90e-08;1!UBERON:0003830;2.90e-08;1!UBERON:0005175;2.90e-08;1!UBERON:0001774;2.90e-08;1!UBERON:0001103;2.90e-08;1!UBERON:0006834;8.12e-08;1!UBERON:0007500;9.46e-08;56!UBERON:0001981;9.46e-08;56!UBERON:0004537;9.46e-08;56!UBERON:0001009;1.97e-07;112!UBERON:0002193;2.34e-07;42!UBERON:0004573;2.68e-07;33!UBERON:0004571;2.68e-07;33!UBERON:0001638;3.65e-07;9!UBERON:0003920;3.65e-07;9!UBERON:0004582;3.65e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.18e-35,18;UBERON:0001986,1.18e-35,18;UBERON:0004852,1.18e-35,18;UBERON:0001473,1.90e-29,8;UBERON:0004536,1.90e-29,8;UBERON:0006558,1.90e-29,8;UBERON:0000487,7.18e-29,22;UBERON:0006914,3.32e-25,25;UBERON:0000055,5.93e-25,68;UBERON:0002465,1.78e-23,10;UBERON:0002049,2.54e-21,78;UBERON:0007798,2.54e-21,78;UBERON:0003915,1.75e-18,9;UBERON:0004700,1.75e-18,9;UBERON:0001917,1.75e-18,9;UBERON:0004535,2.68e-14,109;UBERON:0001009,7.97e-14,112;UBERON:0007500,9.27e-12,59;UBERON:0001981,9.27e-12,59;UBERON:0004537,9.27e-12,59;UBERON:0006965,9.27e-12,59;UBERON:0000947,6.41e-11,21;UBERON:0010191,6.41e-11,21;UBERON:0010523,1.75e-10,3;UBERON:0001915,1.75e-10,3;UBERON:0001982,1.75e-10,3;UBERON:0000490,1.94e-08,148;UBERON:0007029,2.52e-08,1;UBERON:0002426,2.90e-08,1;UBERON:0003831,2.90e-08,1;UBERON:0003898,2.90e-08,1;UBERON:0004830,2.90e-08,1;UBERON:0003830,2.90e-08,1;UBERON:0005175,2.90e-08,1;UBERON:0001774,2.90e-08,1;UBERON:0001103,2.90e-08,1;UBERON:0010084,2.90e-08,1;UBERON:0006834,5.40e-08,1;UBERON:0002370,6.00e-08,4;UBERON:0005058,6.00e-08,4;UBERON:0009113,6.00e-08,4;UBERON:0003295,6.00e-08,4;UBERON:0005562,6.00e-08,4;UBERON:0004872,8.46e-08,83;UBERON:0001638,3.98e-07,9;UBERON:0003920,3.98e-07,9;UBERON:0004582,3.98e-07,9;UBERON:0004573,9.35e-07,33;UBERON:0004571,9.35e-07,33 | |||
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| ||
|short_description=p13@SMAD1 | |||
}} | }} |
Latest revision as of 23:15, 15 September 2015
Short description: | p13@SMAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SMAD1_5end |
Coexpression cluster: | C4376_Endothelial_acute_Neural_Lymphatic_uterus_thymus_skin |
Association with transcript: | 195bp_to_ENST00000514168_5end |
EntrezGene: | SMAD1 |
HGNC: | 6767 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.85e-68 | 24 |
endothelial cell | 2.47e-44 | 36 |
lymphangioblast | 2.20e-39 | 6 |
endothelial cell of lymphatic vessel | 2.20e-39 | 6 |
vascular lymphangioblast | 2.20e-39 | 6 |
blood vessel endothelial cell | 1.18e-35 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.18e-35 | 18 |
meso-epithelial cell | 7.67e-35 | 45 |
aortic endothelial cell | 8.97e-28 | 6 |
lining cell | 2.51e-26 | 58 |
barrier cell | 2.51e-26 | 58 |
endothelial cell of artery | 1.75e-18 | 9 |
mesodermal cell | 2.88e-14 | 121 |
capillary endothelial cell | 1.75e-10 | 3 |
vein endothelial cell | 1.87e-10 | 6 |
squamous epithelial cell | 5.58e-09 | 63 |
embryonic cell | 1.45e-07 | 250 |