FFCP PHASE1:Hg19::chr2:234398471..234398487,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55230 | |EntrezGene=55230 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20069 | |HGNC=20069 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_ENST00000496298_5end | |association_with_transcript=27bp_to_ENST00000496298_5end | ||
|cluster_id=chr2:234398471..234398487,- | |||
|coexpression_cluster_id=C4198 | |||
|description=CAGE_peak_4_at_USP40_5end | |description=CAGE_peak_4_at_USP40_5end | ||
|id=chr2:234398471..234398487,- | |id=chr2:234398471..234398487,- | ||
|ontology_enrichment_celltype=CL:0000077!1.17e-17!19;CL:0000220!1.45e-08!246;CL:0002321!2.31e-08!248;CL:0002368!5.16e-08!13;CL:0000076!4.48e-07!62 | |ontology_enrichment_celltype=CL:0000077!1.17e-17!19;CL:0000220!1.45e-08!246;CL:0002321!2.31e-08!248;CL:0002368!5.16e-08!13;CL:0000076!4.48e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0000077;2.37e-28;19!CL:0000244;1.47e-11;4!CL:0000731;1.47e-11;4!CL:0002097;3.13e-11;2!CL:0000317;2.18e-10;2!CL:1000448;2.18e-10;2!CL:0002308;2.18e-10;2!CL:0002536;2.18e-10;2!CL:0002140;2.18e-10;2!CL:0000150;7.05e-09;9!CL:0000349;2.42e-08;19!CL:0000174;9.41e-08;3!CL:0002541;3.38e-07;3!CL:0000076;5.20e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.68e-28,19;CL:0000076,9.33e-12,63;CL:0000244,1.35e-11,4;CL:0000731,1.35e-11,4;CL:0002097,3.14e-11,2;CL:0000317,1.42e-10,2;CL:1000448,1.42e-10,2;CL:0002308,1.42e-10,2;CL:0002140,1.42e-10,2;CL:0002536,3.04e-10,2;CL:0000213,2.19e-09,58;CL:0000215,2.19e-09,58;CL:0000066,2.57e-09,253;CL:0000150,5.87e-09,9;CL:0000349,2.98e-08,19;CL:0000174,9.43e-08,3;CL:0002541,4.76e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.34e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.14e-10!14;UBERON:0000158!1.14e-10!14;UBERON:0000478!7.03e-09!24;UBERON:0003124!4.58e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;5.80e-16;5!UBERON:0005910;2.55e-13;6!UBERON:0002419;2.18e-10;2!UBERON:0007771;2.18e-10;2!UBERON:0003297;2.18e-10;2!UBERON:0001821;2.18e-10;2!UBERON:0003487;2.18e-10;2!UBERON:0001820;2.18e-10;2!UBERON:0000486;7.09e-10;12!UBERON:0002369;9.41e-08;3!UBERON:0001235;9.41e-08;3!UBERON:0006858;9.41e-08;3!UBERON:0005631;1.11e-07;10!UBERON:0000158;1.11e-07;10!UBERON:0001280;2.28e-07;3!UBERON:0004647;2.28e-07;3!UBERON:0003124;3.38e-07;3!UBERON:0000920;3.38e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,5.10e-16,5;UBERON:0005910,2.29e-13,6;UBERON:0002419,1.42e-10,2;UBERON:0007771,1.42e-10,2;UBERON:0003297,1.42e-10,2;UBERON:0001821,1.42e-10,2;UBERON:0003487,1.42e-10,2;UBERON:0001820,1.42e-10,2;UBERON:0005089,1.42e-10,2;UBERON:0005088,1.42e-10,2;UBERON:0005631,4.81e-08,14;UBERON:0000158,4.81e-08,14;UBERON:0002369,9.43e-08,3;UBERON:0001235,9.43e-08,3;UBERON:0006858,9.43e-08,3;UBERON:0001280,2.47e-07,3;UBERON:0004647,2.47e-07,3;UBERON:0005171,2.47e-07,3;UBERON:0000920,4.76e-07,3 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.563817616383885,0,0,0,0,0,0,0.245733936501509,0.697801167972428,2.18441372130172,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.496971951695318,0.12663051166458,0.264818361626438,0,0.709336764396714,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0.45071417671979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,1.09098448236334,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0,0,0.219500570817251,1.1240175325762,0.703702806881416,0.0925884451585296,0,0,0,0,0.469634776943287,0,0,0,0,0,0,0,0,0.93733833986777,1.6798212819886,0.708875486211932,0,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,2.19761916788222,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0.791951872933429,2.41151501647669,1.74306691720059,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0,1.57702415033935,0.819989904948992,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,1.66435439510497,0.604780586659361,3.72161711728165,0.61384789315225,0.561320188866147,0.512556597022804,0,0.321707842287215,2.96836132889982,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,2.29706215198469,1.95018073810956,0,0,0,0,0.137836572484531,0,0,0,0,0.330569830721956,0.384380134730212,0.382838137483752,0.30347334256665,0,0.31481234683064,0,0,0,0,0.55597265731176,0.715624433709956,0,0.632758849437452,0.571890581771475,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,2.11300293513511,0,0,0,0,1.99031692572366,0,0,0,0.405820753925408,0,0,0.430234056612155,1.27723753317057,0.7133421029625,0,0.422215270595328,0,0,0,0.0962221127255121,0.670302275535787,0,0,2.58303223602738,0,2.21715076768338,2.29723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.593929361665277,0.614321404198464,0,0,1.55832187032068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.49469718327907,0,0,0,0.31900115973192,1.19076871422421,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.876214728748802,0,0.234264445725339,0,0.19566461893209,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0.0633107959558787,0.195551382734803,0.0801588202515337,0,0,0,0,0,0,0,0,0.135904206073614,0,0,1.44475294950759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0.113312091520126,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14681839138014,0.221858103073705,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0.159296767163702,0.899606224327209,0.776314784381297,0,0.797525143673985,1.5652351854352,1.50257608997218,0,0.406870733204662,0.181848659202559,1.18151612746737,0,0.398095888698616,0,0,0,0,3.65977677773876,7.07657251537255,0.260994291965212,6.5744718398559,3.00979216620984,1.71315693154527,1.61179956973339,0.617602894321944,0.657852148736121,1.41351316756705,0.38582807654183,3.54779125371453,0,0,1.21543982470953,0.138258436151731,0,0,0,0,6.14432271884298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0.0691572524642179,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0.266107110487916,0,2.7438081509987,0.271878931907327,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.594092800654172,0,0.169927114687817,0,0,0,0.178553938605658,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0,0.865253124247578,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.620597975171371,0,0,0,0,0,0,0,0,0,0,0,0,3.66314708749385,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.54503513781167,0.214100523890983,0.563817616383885,0,0,0,0,0,0,0.245733936501509,0.697801167972428,2.18441372130172,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.496971951695318,0.12663051166458,0.264818361626438,0,0.709336764396714,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0.45071417671979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,1.09098448236334,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0,0,0.219500570817251,1.1240175325762,0.703702806881416,0.0925884451585296,0,0,0,0,0.469634776943287,0,0,0,0,0,0,0,0,0.93733833986777,1.6798212819886,0.708875486211932,0,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,2.19761916788222,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0.791951872933429,2.41151501647669,1.74306691720059,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0,1.57702415033935,0.819989904948992,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,1.66435439510497,0.604780586659361,3.72161711728165,0.61384789315225,0.561320188866147,0.512556597022804,0,0.321707842287215,2.96836132889982,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,2.29706215198469,1.95018073810956,0,0,0,0,0.137836572484531,0,0,0,0,0.330569830721956,0.384380134730212,0.382838137483752,0.30347334256665,0,0.31481234683064,0,0,0,0,0.55597265731176,0.715624433709956,0,0.632758849437452,0.571890581771475,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,2.11300293513511,0,0,0,0,1.99031692572366,0,0,0,0.405820753925408,0,0,0.430234056612155,1.27723753317057,0.7133421029625,0,0.422215270595328,0,0,0,0.0962221127255121,0.670302275535787,0,0,2.58303223602738,0,2.21715076768338,2.29723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.593929361665277,0.614321404198464,0,0,1.55832187032068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.49469718327907,0,0,0,0.31900115973192,1.19076871422421,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.876214728748802,0,0.234264445725339,0,0.19566461893209,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0.0633107959558787,0.195551382734803,0.0801588202515337,0,0,0,0,0,0,0,0,0.135904206073614,0,0,1.44475294950759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0.113312091520126,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14681839138014,0.221858103073705,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0.159296767163702,0.899606224327209,0.776314784381297,0,0.797525143673985,1.5652351854352,1.50257608997218,0,0.406870733204662,0.181848659202559,1.18151612746737,0,0.398095888698616,0,0,0,0,3.65977677773876,7.07657251537255,0.260994291965212,6.5744718398559,3.00979216620984,1.71315693154527,1.61179956973339,0.617602894321944,0.657852148736121,1.41351316756705,0.38582807654183,3.54779125371453,0,0,1.21543982470953,0.138258436151731,0,0,0,0,6.14432271884298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0.0691572524642179,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0.266107110487916,0,2.7438081509987,0.271878931907327,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.594092800654172,0,0.169927114687817,0,0,0,0.178553938605658,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0,0.865253124247578,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.620597975171371,0,0,0,0,0,0,0,0,0,0,0,0,3.66314708749385,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@USP40 | |short_description=p4@USP40 | ||
}} | }} |
Latest revision as of 23:12, 15 September 2015
Short description: | p4@USP40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_USP40_5end |
Coexpression cluster: | C4198_mesothelioma_mucinous_cholangiocellular_Urothelial_transitionalcell_anaplastic_pleomorphic |
Association with transcript: | 27bp_to_ENST00000496298_5end |
EntrezGene: | USP40 |
HGNC: | 20069 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.68e-28 | 19 |
squamous epithelial cell | 9.33e-12 | 63 |
transitional epithelial cell | 1.35e-11 | 4 |
urothelial cell | 1.35e-11 | 4 |
cortical cell of adrenal gland | 3.14e-11 | 2 |
sebum secreting cell | 1.42e-10 | 2 |
epithelial cell of sweat gland | 1.42e-10 | 2 |
epithelial cell of skin gland | 1.42e-10 | 2 |
acinar cell of sebaceous gland | 1.42e-10 | 2 |
amniotic epithelial cell | 3.04e-10 | 2 |
lining cell | 2.19e-09 | 58 |
barrier cell | 2.19e-09 | 58 |
epithelial cell | 2.57e-09 | 253 |
glandular epithelial cell | 5.87e-09 | 9 |
extraembryonic cell | 2.98e-08 | 19 |
steroid hormone secreting cell | 9.43e-08 | 3 |
chorionic membrane mesenchymal stem cell | 4.76e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
urothelium | 5.10e-16 | 5 |
transitional epithelium | 2.29e-13 | 6 |
skin gland | 1.42e-10 | 2 |
epidermis gland | 1.42e-10 | 2 |
gland of integumental system | 1.42e-10 | 2 |
sebaceous gland | 1.42e-10 | 2 |
skin sebaceous gland | 1.42e-10 | 2 |
sweat gland | 1.42e-10 | 2 |
sweat gland placode | 1.42e-10 | 2 |
sebaceous gland placode | 1.42e-10 | 2 |
extraembryonic membrane | 4.81e-08 | 14 |
membranous layer | 4.81e-08 | 14 |
adrenal gland | 9.43e-08 | 3 |
adrenal cortex | 9.43e-08 | 3 |
adrenal/interrenal gland | 9.43e-08 | 3 |
liver parenchyma | 2.47e-07 | 3 |
liver lobule | 2.47e-07 | 3 |
hepatic duct | 2.47e-07 | 3 |
egg chorion | 4.76e-07 | 3 |