FFCP PHASE1:Hg19::chr4:146403912..146403972,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4086 | |EntrezGene=4086 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6767 | |HGNC=6767 | ||
|TSSclassifier=strong | |||
|UniProt=Q15797 | |UniProt=Q15797 | ||
|association_with_transcript=0bp_to_ENST00000394092,ENST00000507367,ENST00000514168,ENST00000515385,NM_001003688,uc003ikd.2,uc010iov.2_5end | |association_with_transcript=0bp_to_ENST00000394092,ENST00000507367,ENST00000514168,ENST00000515385,NM_001003688,uc003ikd.2,uc010iov.2_5end | ||
|cluster_id=chr4:146403912..146403972,+ | |||
|coexpression_cluster_id=C4376 | |coexpression_cluster_id=C4376 | ||
|description=CAGE_peak_5_at_SMAD1_5end | |description=CAGE_peak_5_at_SMAD1_5end | ||
|id=chr4:146403912..146403972,+ | |id=chr4:146403912..146403972,+ | ||
|ontology_enrichment_celltype=CL:0002139;5.42e-32;24!CL:0000115;2.63e-25;36!CL:0000071;1.42e-23;18!CL:0002078;1.79e-15;45!CL:1000413;6.28e-12;9!CL:0000213;1.99e-10;58!CL:0000215;1.99e-10;58!CL:0002138;5.61e-10;6!CL:0002543;4.44e-09;6!CL:0002544;4.54e-09;6!CL:0002319;1.42e-08;25!CL:0000540;6.78e-08;6!CL:0000404;6.78e-08;6 | |ontology_enrichment_celltype=CL:0002139!4.81e-17!24;CL:0000115!4.51e-14!35;CL:0000071!8.41e-13!18;CL:0002546!8.41e-13!18;CL:0002078!3.02e-11!44;CL:0002319!3.22e-07!25;CL:1000413!7.03e-07!9 | ||
| | |ontology_enrichment_celltype_v019=CL:0002139;5.42e-32;24!CL:0000115;2.63e-25;36!CL:0000071;1.42e-23;18!CL:0002078;1.79e-15;45!CL:1000413;6.28e-12;9!CL:0000213;1.99e-10;58!CL:0000215;1.99e-10;58!CL:0002138;5.61e-10;6!CL:0002543;4.44e-09;6!CL:0002544;4.54e-09;6!CL:0002319;1.42e-08;25!CL:0000540;6.78e-08;6!CL:0000404;6.78e-08;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.27e-32,24;CL:0000115,4.05e-30,36;CL:0000071,1.06e-23,18;CL:0002546,1.06e-23,18;CL:0002078,3.29e-23,45;CL:0000213,1.16e-16,58;CL:0000215,1.16e-16,58;CL:1000413,4.80e-12,9;CL:0000047,3.09e-10,8;CL:0005020,6.02e-10,6;CL:0002138,6.02e-10,6;CL:0005022,6.02e-10,6;CL:0002543,4.27e-09,6;CL:0002544,5.47e-09,6;CL:0002319,1.28e-08,25;CL:0000540,3.42e-08,6;CL:0000031,3.42e-08,6;CL:0000404,3.42e-08,6;CL:0000222,5.67e-08,121 | |||
|ontology_enrichment_development_v019=CL:0002546;1.42e-23;18!CL:0005022;5.61e-10;6!CL:0000031;6.78e-08;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0004638;1.42e-23;18!UBERON:0001986;1.42e-23;18!UBERON:0004852;1.42e-23;18!UBERON:0000487;4.30e-18;22!UBERON:0006914;8.32e-17;25!UBERON:0003915;6.28e-12;9!UBERON:0004700;6.28e-12;9!UBERON:0001917;6.28e-12;9!UBERON:0000490;3.10e-10;33!UBERON:0000055;2.99e-09;65!UBERON:0007500;1.37e-07;56!UBERON:0001981;1.37e-07;56!UBERON:0004537;1.37e-07;56!UBERON:0001638;3.09e-07;9!UBERON:0003920;3.09e-07;9!UBERON:0004582;3.09e-07;9!UBERON:0001473;3.97e-07;8!UBERON:0004536;3.97e-07;8!UBERON:0006558;3.97e-07;8 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!2.36e-14!241;UBERON:0000025!2.28e-13!194;UBERON:0001986!8.41e-13!18;UBERON:0004638!8.41e-13!18;UBERON:0004852!8.41e-13!18;UBERON:0000119!1.08e-11!312;UBERON:0000483!1.22e-11!309;UBERON:0000477!2.55e-11!286;UBERON:0000073!2.13e-10!94;UBERON:0001016!2.13e-10!94;UBERON:0006914!8.37e-10!25;UBERON:0000487!1.53e-09!22;UBERON:0000467!1.70e-09!625;UBERON:0000480!2.66e-09!626;UBERON:0001017!3.11e-09!82;UBERON:0000468!4.12e-09!659;UBERON:0005743!7.04e-09!86;UBERON:0007023!1.19e-07!115;UBERON:0001049!2.76e-07!57;UBERON:0005068!2.76e-07!57;UBERON:0006241!2.76e-07!57;UBERON:0007135!2.76e-07!57;UBERON:0000922!5.75e-07!612;UBERON:0003915!7.03e-07!9;UBERON:0004700!7.03e-07!9;UBERON:0001917!7.03e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.42e-23;18!UBERON:0001986;1.42e-23;18!UBERON:0004852;1.42e-23;18!UBERON:0000487;4.30e-18;22!UBERON:0006914;8.32e-17;25!UBERON:0003915;6.28e-12;9!UBERON:0004700;6.28e-12;9!UBERON:0001917;6.28e-12;9!UBERON:0000490;3.10e-10;33!UBERON:0000055;2.99e-09;65!UBERON:0007500;1.37e-07;56!UBERON:0001981;1.37e-07;56!UBERON:0004537;1.37e-07;56!UBERON:0001638;3.09e-07;9!UBERON:0003920;3.09e-07;9!UBERON:0004582;3.09e-07;9!UBERON:0001473;3.97e-07;8!UBERON:0004536;3.97e-07;8!UBERON:0006558;3.97e-07;8 | |||
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|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,2.6893005858071,0,0,0.975865597581014,0.738726348460727,0.204000691244253,1.25381888591235,6.86966369114536,3.83248390204076,1.88313959392204,0,0,0,0.393364276848904,0,0.154816123316076,0.919421224478927,0.6024118375565,0.369754010166788,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0.242584061187816,0,0,0.309706370895104,0.28769239232215,0,0.236482229888585,0.689491361473237,0.645484683583826,0,0,0.272906150057846,0,1.83650335422542,1.28371610830437,1.27867425159808,0,0,0,0.290209238628584,0.56738522469114,0.622822248995575,0,0.521482918420201,0,0.605399502633369,0,0,0.211255286311942,0.212604299965044,0.209658645508376,0.22465726229299,0,0.16072558669708,1.14005097496499,0.39783335439818,0.91332076882317,0,0,0.889509253863555,0,0,0,0,0,0,0,0,2.64342657158052,3.92355994087075,1.84368859342554,0,0,0,0,0,0,0,0.557052284425868,0,0.443067789167242,1.08321545506006,1.5370958367081,1.04047478047903,0,0,0,0,0,0,0.906474741580529,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0.255725123687061,0,0,0.144846518960824,0,0,0.567208902984407,0.443458794925128,0.966182642624386,0.523916301990851,0,0,0.97364218096405,1.0447784237956,0.797747763113191,0,0.571994910780128,0,5.76410981363445,2.58070378531837,5.20710752411391,2.26123176769604,1.67799774483962,2.75118041940067,2.29894463190492,11.8871709217891,11.7402866686614,24.7693253445856,18.9329779041299,7.60272105718513,13.4234131651493,9.92690316933846,3.24056779152704,7.76907636071494,3.14341121676638,2.81528701208306,3.06633274931766,4.74632829784064,3.11442964681692,0,0,0,0,0,0.264818361626438,1.14734648299525,0,0,4.2699598291882,0.24666754841716,0.622422070799533,0.942974704487816,1.63461903113459,0.302714855289863,0,0.937285727335186,0,0,0,0.587172493218824,0.161872944368132,0.561803226808994,0.204154171254893,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.340296549480063,0.538168907066586,0.213557388818567,0.211931901159562,0.600182192168805,0.618315175430633,1.28820270022815,0.18611685633159,0.675105328965065,0.389748020644795,0.504867548488229,0.736399189138395,1.13152239773168,0.710019185033229,0.302256294682921,0,0.773043412653187,0.818238361772504,0.286804595389004,0.243947412259191,0.397589304964456,0.348581828608555,0.829288440122964,0.756962552626885,0.36497735907583,0,0,2.76269842704961,0,0,0.118306800039844,0,0,0,0,0,0.134831308160164,0,0,2.95262181849859,2.80483547606892,0,0,0,2.94848165003288,0.590789906681404,0.441463099414651,0,0.686271241194102,0.109750285408626,0,0,0.833296006426766,0.325808305310325,0,0,1.39116485970092,0.70445216541493,8.66198686566443,5.09284063834272,9.32245345949531,0,0,0,0,0,0,0.16798212819886,0.992425680696705,0.179117045405697,0,0,0.985326475791887,0,0,0,0.12624243342638,0,0,0,0,0.308482478109971,0,0,0.784917590417525,0,0.66004457238855,0.129271715757778,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,1.62868092146868,0,0,0,0,0.199945982364114,0,0,0,0,1.14861935834114,1.42636905040718,0.144781306667579,0.410952645100767,0.179060963239896,0,0,0,0,7.11464947822898,1.30139853857622,1.54657762555539,3.18280904135263,4.46557126157214,0,0,0,0.12269149171914,0,0.271265023699736,0.207970861530807,0.178428988797162,0,0.35142424497814,0.300946099727719,0,0,0,0.184369168541703,0.347534457872331,0.195801157462741,0,0.206768026122887,0.215714200818617,0,0.303127571446259,0,0.30239029332968,0.248107807818777,0.306923946576125,0,0,0.511707249066704,0,0,0.308419387605311,0.532685175939381,0.9033987161519,0,0.232420756919918,0.120859449591622,0.200506470303285,0.460404944679482,0.459257792658427,0,0.131124414959424,0.451199612907412,0.539107359730903,0.784349769176855,1.46139224653261,2.63879072232189,1.13733384070897,1.36074964221213,4.31831832204279,6.16909010761157,0,0.501689773854853,0.509752546090077,0,0.223874754722178,0.657779629937804,0,0,0.656029291399411,0.325378394664303,1.03041011647722,0.732555718546747,0.495056999523528,0,1.30012049207304,0,1.54673149267395,0.154048617114644,0.307007349452259,0.413509717453592,0.644521469209642,0.290033387828457,0,2.67096106940212,0.991709492165869,0.576570202095319,1.27612712494584,0.910420027699949,0,0,0,2.15623506123262,0,0,0.74129687641568,0.572499546967965,0.372158369359667,0,0,0,0.42793898803392,0.636406495851874,0,0.719489830333259,0.274537029736055,0.353437207037059,0,0,0.842516912477962,0,0.243713489631284,1.05650146756755,0.272999822815972,0.848432591722276,1.13008116620243,0,0,1.31535265576129,0.578775534266688,0.655894752046633,0.202910376962704,0,0.281695602532241,0.286822704408103,0.294747123039363,0,0,0.844430541190656,0.329294892959902,0,0,0.673554789078584,0,0,1.50630081242847,0.43050537267123,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0.185803175125719,12.6956907419271,0.711418433484141,1.59426272728822,0,0,2.11673582723883,0.324621940274555,1.12318871245384,0,0,2.50634477090067,0.507875333404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| ||
|short_description=p5@SMAD1 | |short_description=p5@SMAD1 | ||
}} | }} |
Latest revision as of 23:12, 15 September 2015
Short description: | p5@SMAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SMAD1_5end |
Coexpression cluster: | C4376_Endothelial_acute_Neural_Lymphatic_uterus_thymus_skin |
Association with transcript: | 0bp_to_ENST00000394092, ENST00000507367, ENST00000514168, ENST00000515385, NM_001003688, uc003ikd.2, uc010iov.2_5end |
EntrezGene: | SMAD1 |
HGNC: | 6767 |
UniProt: | Q15797 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.27e-32 | 24 |
endothelial cell | 4.05e-30 | 36 |
blood vessel endothelial cell | 1.06e-23 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.06e-23 | 18 |
meso-epithelial cell | 3.29e-23 | 45 |
lining cell | 1.16e-16 | 58 |
barrier cell | 1.16e-16 | 58 |
endothelial cell of artery | 4.80e-12 | 9 |
neuronal stem cell | 3.09e-10 | 8 |
lymphangioblast | 6.02e-10 | 6 |
endothelial cell of lymphatic vessel | 6.02e-10 | 6 |
vascular lymphangioblast | 6.02e-10 | 6 |
vein endothelial cell | 4.27e-09 | 6 |
aortic endothelial cell | 5.47e-09 | 6 |
neural cell | 1.28e-08 | 25 |
neuron | 3.42e-08 | 6 |
neuroblast | 3.42e-08 | 6 |
electrically signaling cell | 3.42e-08 | 6 |
mesodermal cell | 5.67e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.06e-23 | 18 |
endothelium | 1.06e-23 | 18 |
cardiovascular system endothelium | 1.06e-23 | 18 |
simple squamous epithelium | 3.38e-18 | 22 |
squamous epithelium | 9.26e-17 | 25 |
vessel | 3.18e-14 | 68 |
anatomical conduit | 4.06e-12 | 240 |
endothelial tube | 4.80e-12 | 9 |
arterial system endothelium | 4.80e-12 | 9 |
endothelium of artery | 4.80e-12 | 9 |
splanchnic layer of lateral plate mesoderm | 3.62e-11 | 83 |
vasculature | 4.82e-11 | 78 |
vascular system | 4.82e-11 | 78 |
tube | 8.51e-11 | 192 |
epithelial tube open at both ends | 2.75e-10 | 59 |
blood vessel | 2.75e-10 | 59 |
blood vasculature | 2.75e-10 | 59 |
vascular cord | 2.75e-10 | 59 |
cardiovascular system | 2.90e-09 | 109 |
circulatory system | 1.02e-08 | 112 |
epithelial tube | 1.43e-08 | 117 |
epithelium | 1.53e-07 | 306 |
vein | 2.72e-07 | 9 |
venous blood vessel | 2.72e-07 | 9 |
venous system | 2.72e-07 | 9 |
cell layer | 2.77e-07 | 309 |
lymphatic vessel | 4.17e-07 | 8 |
lymph vasculature | 4.17e-07 | 8 |
lymphatic part of lymphoid system | 4.17e-07 | 8 |