FFCP PHASE1:Hg19::chr4:146402827..146402839,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4086 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6767 | |||
|TSSclassifier=strong | |||
|UniProt=D6RDN7 | |||
|association_with_transcript=-10bp_to_ENST00000514831_5end | |||
|cluster_id=chr4:146402827..146402839,+ | |||
|description=CAGE_peak_10_at_SMAD1_5end | |||
|id=chr4:146402827..146402839,+ | |||
|ontology_enrichment_celltype=CL:0002139!4.55e-10!24;CL:0000071!2.70e-07!18;CL:0002546!2.70e-07!18;CL:0000115!8.88e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.57e-49;24!CL:0000115;4.26e-28;36!CL:0000071;1.86e-27;18!CL:0002138;1.12e-26;6!CL:0002144;3.13e-20;3!CL:0002618;5.95e-20;3!CL:0002078;6.02e-18;45!CL:0000213;7.95e-15;58!CL:0000215;7.95e-15;58!CL:0002543;3.06e-10;6!CL:0002544;4.19e-10;6!CL:1000413;6.97e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.14e-49,24;CL:0000115,4.58e-37,36;CL:0002078,4.85e-29,45;CL:0000071,1.71e-27,18;CL:0002546,1.71e-27,18;CL:0005020,8.24e-27,6;CL:0002138,8.24e-27,6;CL:0005022,8.24e-27,6;CL:0000213,7.65e-22,58;CL:0000215,7.65e-22,58;CL:0002144,2.00e-20,3;CL:0002618,7.26e-20,3;CL:0002543,3.38e-10,6;CL:0000076,3.49e-10,63;CL:0002544,4.33e-10,6;CL:0000222,6.91e-09,121;CL:1000413,7.13e-07,9;CL:0000066,9.43e-07,253 | |||
|ontology_enrichment_development_v019=CL:0002546;1.86e-27;18!CL:0005022;1.12e-26;6!UBERON:0000358;6.35e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3111;1.58e-07;1!DOID:3603;1.58e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,2.80e-07,1;DOID:3603,2.80e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001986!2.70e-07!18;UBERON:0004638!2.70e-07!18;UBERON:0004852!2.70e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.86e-27;18!UBERON:0001986;1.86e-27;18!UBERON:0004852;1.86e-27;18!UBERON:0000487;3.35e-22;22!UBERON:0010523;3.13e-20;3!UBERON:0001915;3.13e-20;3!UBERON:0001982;3.13e-20;3!UBERON:0001473;5.63e-20;8!UBERON:0004536;5.63e-20;8!UBERON:0006558;5.63e-20;8!UBERON:0006914;2.32e-19;25!UBERON:0002465;6.00e-16;10!UBERON:0002066;3.43e-12;5!UBERON:0000490;3.93e-12;33!UBERON:0000055;3.70e-11;65!UBERON:0002049;5.00e-08;75!UBERON:0007798;5.00e-08;75!UBERON:0002405;5.32e-08;27!UBERON:0007500;8.00e-08;56!UBERON:0001981;8.00e-08;56!UBERON:0004537;8.00e-08;56!UBERON:0006834;1.58e-07;1!UBERON:0000996;1.58e-07;1!UBERON:0001638;5.69e-07;9!UBERON:0010260;5.69e-07;9!UBERON:0003920;5.69e-07;9!UBERON:0004582;5.69e-07;9!UBERON:0003915;6.97e-07;9!UBERON:0004700;6.97e-07;9!UBERON:0001917;6.97e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.71e-27,18;UBERON:0001986,1.71e-27,18;UBERON:0004852,1.71e-27,18;UBERON:0000487,3.13e-22,22;UBERON:0010523,2.00e-20,3;UBERON:0001915,2.00e-20,3;UBERON:0001982,2.00e-20,3;UBERON:0001473,4.47e-20,8;UBERON:0004536,4.47e-20,8;UBERON:0006558,4.47e-20,8;UBERON:0006914,2.18e-19,25;UBERON:0000055,3.53e-18,68;UBERON:0002465,5.01e-16,10;UBERON:0002049,1.87e-15,78;UBERON:0007798,1.87e-15,78;UBERON:0002066,3.86e-12,5;UBERON:0001009,2.50e-11,112;UBERON:0004535,3.40e-10,109;UBERON:0007500,3.97e-09,59;UBERON:0001981,3.97e-09,59;UBERON:0004537,3.97e-09,59;UBERON:0006965,3.97e-09,59;UBERON:0006834,7.76e-08,1;UBERON:0000996,1.22e-07,1;UBERON:0004872,2.88e-07,83;UBERON:0001638,6.06e-07,9;UBERON:0010260,6.06e-07,9;UBERON:0003920,6.06e-07,9;UBERON:0004582,6.06e-07,9;UBERON:0003915,7.13e-07,9;UBERON:0004700,7.13e-07,9;UBERON:0001917,7.13e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0.331397375727916,0,0.602694528023977,0.730310090387373,0.487932798790507,0.123121058076788,0.204000691244253,0.626909442956176,0.572471974262113,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689491361473237,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0.211255286311942,0,0,0,0.150176892841506,0,0,0.19891667719909,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,1.5905718941022,0,0.0945348171640679,0.221729397462564,0,0.327447688744282,0,0.741568885568859,0,0.174129737299267,0,0,0,0,1.59009925893364,0.860234595106124,1.04142150482278,0,0.419499436209906,0.275118041940067,0.835979866147242,2.06733407335463,1.42306505074684,3.3472061276467,3.22263453687318,1.52054421143703,7.07779966889692,3.30896772311282,0,2.76829157680647,1.12264686313085,2.25222960966644,0,0,0.732806975721629,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0.622422070799533,0.404132016209064,0.817309515567294,0.302714855289863,0,0.234321431833797,0,0,0.149448680551801,0.704606991862589,0.161872944368132,0.280901613404497,0,0.122834317311768,0.103325781175765,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0.150238058906597,0.226864366320042,0.179389635688862,0,0,0,0.103052529238439,0,0,0,0.292311015483596,0.504867548488229,0,0.323292113637624,0,0.10075209822764,0,0,0.545492241181669,0.286804595389004,0,0.397589304964456,0.116193942869518,0.310983165046111,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0.110293972732394,0.217879444092406,0.237270619111097,0.134831308160164,0,0,0,1.40241773803446,0.8231480226628,0,0,0,0,0,0.122988438543114,0.171567810298526,0.219500570817251,0,0.804231779293047,0.185176890317059,0,0,0,0.463721619900307,0.234817388471643,1.15493158208859,0,2.66355813128438,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0.102827492703324,0,0.571652865261156,0.336393253036082,0.87192013766656,0.5867062865676,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0.355391948742546,0,0.602878754119172,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0,0.178428988797162,0,0.117141414992713,0.300946099727719,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462629081407967,0.177561725313127,0.492762936082855,0,0.232420756919918,0,0,0.460404944679482,0.114814448164607,0,0.262248829918848,0.451199612907412,0.0770153371044148,0.784349769176855,0,0.105551628892876,0,0.680374821106063,0.647747748306418,0,0.270946437543853,0,0,0,0.223874754722178,0.438519753291869,0.261435451024901,0,0.328014645699706,0.325378394664303,0.206082023295445,0.366277859273374,0.495056999523528,1.14853107599234,0,0,0.48335359146061,0,0.307007349452259,0,0.107420244868274,0.290033387828457,0.170453254832202,0.356128142586949,0,0.192190067365106,1.14851441245126,0.30347334256665,0,0,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0.38126038784765,0,0,0.318203247925937,0,0.179872457583315,0,0.235624804691373,0.202182481573316,0,0,0,0,0,0,0.424216295861138,0,0,0,0,0,0,0.202910376962704,0,0.281695602532241,0.286822704408103,0,0,0,0.211107635297664,0,0,0.349934720244983,0.288666338176536,0.670302275535787,0,0.0941438007767792,1.29151611801369,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0.721346064882224,0.924843963529383,0,0,0,0,0.324621940274555,0,0,0,0,0.169291777801603,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0.33307196799782,0,0.561421621224659,0.73254089635947,0.36408156524854,0,0.284136146806413,0,0,0.614321404198464,0,0.140669416410513,0.333926115068718,0,0,0.398495976502139,0,0.503865495708552,0.715880777515084,0,0,0.0898683511473268,0,0,0.986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0,0.0874599999961957,0,0.341380344856499,0,0.236387681767936,0,0,0.173624994933292,0,0,0,0.221158519862449,0.295547618953547,0,0,0,0.769502585037971,0.113942055847001,0.23056390438806,0.269272933229316,0.217294743844016,0,0.457987967009312,1.06606955203727,0,0.31396051279005,0,0,0,0,0.189753732724185,0.317873157960757,0.210998064528027,0,0,0.432777279484182,0,0.0884575645033392,0,0,0,0.104421949505455,0.134802265961354,0,0,0,0,0.242780379534093,0,0,0.30607276163049,0.379119477770928,0,0,0,0.330991955875499,0,0,0,1.10939738410511,0.347119476670262,0.489961987071888,0.435296032902013,0.17472666824203,0.171986032471617,0.387025325156341,0.146178634172371,0.410577285266046,0.193978032976839,0.441280633457501,0.225980740780532,0.274083849293502,0.596143835108969,0.126621591911757,0.391102765469606,0.160317640503067,0.213452994739353,0.39961921916426,0,0.229073192331831,0,0,0.124252535565433,0,0.543616824294456,0,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0.399358000997982,0.858452096273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| |||
|short_description=p10@SMAD1 | |||
}} |
Latest revision as of 23:07, 15 September 2015
Short description: | p10@SMAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_SMAD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -10bp_to_ENST00000514831_5end |
EntrezGene: | SMAD1 |
HGNC: | 6767 |
UniProt: | D6RDN7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.14e-49 | 24 |
endothelial cell | 4.58e-37 | 36 |
meso-epithelial cell | 4.85e-29 | 45 |
blood vessel endothelial cell | 1.71e-27 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.71e-27 | 18 |
lymphangioblast | 8.24e-27 | 6 |
endothelial cell of lymphatic vessel | 8.24e-27 | 6 |
vascular lymphangioblast | 8.24e-27 | 6 |
lining cell | 7.65e-22 | 58 |
barrier cell | 7.65e-22 | 58 |
capillary endothelial cell | 2.00e-20 | 3 |
endothelial cell of umbilical vein | 7.26e-20 | 3 |
vein endothelial cell | 3.38e-10 | 6 |
squamous epithelial cell | 3.49e-10 | 63 |
aortic endothelial cell | 4.33e-10 | 6 |
mesodermal cell | 6.91e-09 | 121 |
endothelial cell of artery | 7.13e-07 | 9 |
epithelial cell | 9.43e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.71e-27 | 18 |
endothelium | 1.71e-27 | 18 |
cardiovascular system endothelium | 1.71e-27 | 18 |
simple squamous epithelium | 3.13e-22 | 22 |
microcirculatory vessel | 2.00e-20 | 3 |
endothelium of capillary | 2.00e-20 | 3 |
capillary | 2.00e-20 | 3 |
lymphatic vessel | 4.47e-20 | 8 |
lymph vasculature | 4.47e-20 | 8 |
lymphatic part of lymphoid system | 4.47e-20 | 8 |
squamous epithelium | 2.18e-19 | 25 |
vessel | 3.53e-18 | 68 |
lymphoid system | 5.01e-16 | 10 |
vasculature | 1.87e-15 | 78 |
vascular system | 1.87e-15 | 78 |
umbilical vein | 3.86e-12 | 5 |
circulatory system | 2.50e-11 | 112 |
cardiovascular system | 3.40e-10 | 109 |
epithelial tube open at both ends | 3.97e-09 | 59 |
blood vessel | 3.97e-09 | 59 |
blood vasculature | 3.97e-09 | 59 |
vascular cord | 3.97e-09 | 59 |
uterus or analog | 7.76e-08 | 1 |
vagina | 1.22e-07 | 1 |
splanchnic layer of lateral plate mesoderm | 2.88e-07 | 83 |
vein | 6.06e-07 | 9 |
umbilical blood vessel | 6.06e-07 | 9 |
venous blood vessel | 6.06e-07 | 9 |
venous system | 6.06e-07 | 9 |
endothelial tube | 7.13e-07 | 9 |
arterial system endothelium | 7.13e-07 | 9 |
endothelium of artery | 7.13e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 2.80e-07 | 1 |
mucinous cystadenocarcinoma | 2.80e-07 | 1 |