FFCP PHASE1:Hg19::chr3:149191723..149191760,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7104 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11856 | |||
|TSSclassifier=strong | |||
|UniProt=P48230 | |||
|association_with_transcript=0bp_to_ENST00000305354_5end | |||
|cluster_id=chr3:149191723..149191760,+ | |||
|coexpression_cluster_id=C2725 | |||
|description=CAGE_peak_4_at_TM4SF4_5end | |||
|id=chr3:149191723..149191760,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002097;6.43e-14;2!CL:0000174;1.01e-09;3!CL:0002586;1.19e-09;3!CL:0000149;1.49e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002097,6.43e-14,2;CL:0000174,1.01e-09,3;CL:0002586,1.19e-09,3;CL:0000149,1.49e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006242;4.61e-26;1!UBERON:0009497;1.39e-08;13 | |||
|ontology_enrichment_disease=DOID:305!9.23e-08!106;DOID:4468!9.62e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:4468;7.30e-14;2!DOID:3493;1.29e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,7.30e-14,2;DOID:3493,1.07e-13,2 | |||
|ontology_enrichment_uberon=UBERON:0002294!8.51e-07!7;UBERON:0001173!8.51e-07!7;UBERON:0004912!8.51e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;4.22e-15;7!UBERON:0001173;4.22e-15;7!UBERON:0002369;1.01e-09;3!UBERON:0001235;1.01e-09;3!UBERON:0006858;1.01e-09;3!UBERON:0001781;1.19e-09;3!UBERON:0001782;1.19e-09;3!UBERON:0002110;1.30e-09;3!UBERON:0002394;1.86e-07;4!UBERON:0003928;1.86e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002294,5.52e-12,9;UBERON:0001173,5.52e-12,9;UBERON:0004912,5.52e-12,9;UBERON:0002369,1.01e-09,3;UBERON:0001235,1.01e-09,3;UBERON:0006858,1.01e-09,3;UBERON:0001782,1.19e-09,3;UBERON:0005424,1.19e-09,3;UBERON:0002110,1.30e-09,3;UBERON:0006242,1.30e-09,3;UBERON:0001781,1.49e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0.336985893439485,0.150176892841506,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0.612975591598039,0,0,0,0,0,0,0.103052529238439,0.515281080091258,0,0.337552664482532,0.194874010322397,0,0,0,0.355009592516614,0.403008392910561,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0.686286847621712,0,0.431428401637234,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,3.07740150139667,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0.211125408127993,0,0,0,0.20453736500431,0,0,0.359473404589307,1.79021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.210998064528027,5.54991547741102,0,0,0,0.265372693510018,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0,0,0,0.0730893170861856,0,0,0,0,0,0,0,0.195551382734803,0,2.34798294213288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0.688992370603241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684347351537318,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,1.14241563650639,0,0,0,0,0,0.400027764663154,0,0,0,0,7.29101410674747,0,0,0,0,0,0.617602894321944,0.219284049578707,0,0.771656153083659,0,0.256241518587947,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,1.51149313853035,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95068679971631,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@TM4SF4 | |||
}} |
Latest revision as of 21:29, 15 September 2015
Short description: | p4@TM4SF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TM4SF4_5end |
Coexpression cluster: | C2725_clear_mesothelioma_Retinal_serous_gall_signet_bile |
Association with transcript: | 0bp_to_ENST00000305354_5end |
EntrezGene: | TM4SF4 |
HGNC: | 11856 |
UniProt: | P48230 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cortical cell of adrenal gland | 6.43e-14 | 2 |
steroid hormone secreting cell | 1.01e-09 | 3 |
retinal pigment epithelial cell | 1.19e-09 | 3 |
visual pigment cell | 1.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
biliary system | 5.52e-12 | 9 |
biliary tree | 5.52e-12 | 9 |
biliary bud | 5.52e-12 | 9 |
adrenal gland | 1.01e-09 | 3 |
adrenal cortex | 1.01e-09 | 3 |
adrenal/interrenal gland | 1.01e-09 | 3 |
pigmented layer of retina | 1.19e-09 | 3 |
presumptive retinal pigmented epithelium | 1.19e-09 | 3 |
gallbladder | 1.30e-09 | 3 |
gall bladder primordium | 1.30e-09 | 3 |
layer of retina | 1.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 7.30e-14 | 2 |
signet ring cell adenocarcinoma | 1.07e-13 | 2 |