FFCP PHASE1:Hg19::chr9:131446097..131446114,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:131446097..131446114,+ to FFCP PHASE1:Hg19::chr9:131446097..131446114,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6418 | |EntrezGene=6418 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10760 | |HGNC=10760 | ||
|TSSclassifier=strong | |||
|UniProt=Q01105,Q5VXV3 | |UniProt=Q01105,Q5VXV3 | ||
|association_with_transcript=163bp_to_ENST00000372692,NM_001122821,uc004bvt.3_5end | |||
|cluster_id=chr9:131446097..131446114,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_4_at_SET_5end | |||
|id=chr9:131446097..131446114,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.13e-28!254;CL:0002076!6.40e-13!43;CL:0000012!1.55e-12!682;CL:0000548!1.64e-12!679;CL:0000004!1.64e-12!679;CL:0000255!1.64e-12!679;CL:0000223!1.75e-12!59;CL:0000063!5.83e-10!578;CL:0002251!6.49e-09!21;CL:0002321!2.71e-08!248;CL:0000220!1.03e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.07e-11;42!CL:0002251;2.28e-10;20!CL:0000039;3.11e-07;7!CL:0000586;3.11e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.06e-33,253;CL:0002076,1.48e-14,42;CL:0000223,6.82e-14,58;CL:0002251,1.70e-10,20;CL:0000039,3.48e-07,7;CL:0000586,3.48e-07,7;CL:0002077,4.95e-07,34;CL:0000076,6.72e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.65e-07;29!CL:0000223;7.94e-07;58 | |||
|ontology_enrichment_disease=DOID:14566!1.19e-30!239;DOID:162!5.60e-30!235;DOID:0050687!4.80e-28!143;DOID:305!6.16e-25!106;DOID:0050686!2.32e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:3095;8.52e-08;22!DOID:2994;8.52e-08;22!DOID:1749;1.07e-07;14!DOID:305;1.24e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.59e-32,235;DOID:14566,4.99e-32,239;DOID:0050687,2.33e-30,143;DOID:305,1.72e-27,106;DOID:0050686,5.09e-08,137;DOID:1749,7.95e-08,14;DOID:3095,9.86e-08,22;DOID:2994,9.86e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0001007!2.10e-12!155;UBERON:0001555!2.10e-12!155;UBERON:0007026!2.10e-12!155;UBERON:0004119!2.68e-12!169;UBERON:0000925!2.68e-12!169;UBERON:0006595!2.68e-12!169;UBERON:0000077!1.22e-10!130;UBERON:0004921!7.93e-10!129;UBERON:0004185!7.93e-10!129;UBERON:0001041!1.15e-08!98;UBERON:0001004!1.62e-08!72;UBERON:0008947!4.43e-07!38;UBERON:0003258!4.43e-07!38;UBERON:0001737!7.69e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.09e-08;9!UBERON:0001557;4.09e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.36e-10,160;UBERON:0000925,4.36e-10,160;UBERON:0006595,4.36e-10,160;UBERON:0001007,6.97e-10,145;UBERON:0001555,6.97e-10,145;UBERON:0007026,6.97e-10,145;UBERON:0001004,3.04e-08,74;UBERON:0001737,4.88e-08,9;UBERON:0004921,7.17e-08,118;UBERON:0008947,4.78e-07,38;UBERON:0003258,4.78e-07,38 | |||
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| ||
|short_description=p4@SET | |||
}} | }} |
Latest revision as of 20:27, 15 September 2015
Short description: | p4@SET |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SET_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 163bp_to_ENST00000372692, NM_001122821, uc004bvt.3_5end |
EntrezGene: | SET |
HGNC: | 10760 |
UniProt: | Q01105Q5VXV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.06e-33 | 253 |
endo-epithelial cell | 1.48e-14 | 42 |
endodermal cell | 6.82e-14 | 58 |
epithelial cell of alimentary canal | 1.70e-10 | 20 |
germ line cell | 3.48e-07 | 7 |
germ cell | 3.48e-07 | 7 |
ecto-epithelial cell | 4.95e-07 | 34 |
squamous epithelial cell | 6.72e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.36e-10 | 160 |
endoderm | 4.36e-10 | 160 |
presumptive endoderm | 4.36e-10 | 160 |
digestive system | 6.97e-10 | 145 |
digestive tract | 6.97e-10 | 145 |
primitive gut | 6.97e-10 | 145 |
respiratory system | 3.04e-08 | 74 |
larynx | 4.88e-08 | 9 |
subdivision of digestive tract | 7.17e-08 | 118 |
respiratory primordium | 4.78e-07 | 38 |
endoderm of foregut | 4.78e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.59e-32 | 235 |
disease of cellular proliferation | 4.99e-32 | 239 |
cell type cancer | 2.33e-30 | 143 |
carcinoma | 1.72e-27 | 106 |
organ system cancer | 5.09e-08 | 137 |
squamous cell carcinoma | 7.95e-08 | 14 |
germ cell and embryonal cancer | 9.86e-08 | 22 |
germ cell cancer | 9.86e-08 | 22 |