FFCP PHASE1:Hg19::chr1:109419596..109419640,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29899 | |EntrezGene=29899 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29501 | |HGNC=29501 | ||
|TSSclassifier=strong | |||
|UniProt=P81274,Q5T1N9 | |UniProt=P81274,Q5T1N9 | ||
|association_with_transcript=0bp_to_ENST00000264126,ENST00000435987,NM_013296,uc010ovc.1,uc010ovd.1,uc010ove.1_5end | |association_with_transcript=0bp_to_ENST00000264126,ENST00000435987,NM_013296,uc010ovc.1,uc010ovd.1,uc010ove.1_5end | ||
|cluster_id=chr1:109419596..109419640,+ | |||
|description=CAGE_peak_1_at_GPSM2_5end | |description=CAGE_peak_1_at_GPSM2_5end | ||
|id=chr1:109419596..109419640,+ | |id=chr1:109419596..109419640,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.86e-09!254;CL:0002076!5.86e-08!43 | |ontology_enrichment_celltype=CL:0000066!9.86e-09!254;CL:0002076!5.86e-08!43 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.26e-08,253;CL:0002076,1.96e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!9.22e-22!235;DOID:14566!5.29e-21!239;DOID:0050687!1.32e-15!143;DOID:305!6.37e-13!106;DOID:0050686!3.09e-10!137 | |ontology_enrichment_disease=DOID:162!9.22e-22!235;DOID:14566!5.29e-21!239;DOID:0050687!1.32e-15!143;DOID:305!6.37e-13!106;DOID:0050686!3.09e-10!137 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.65e-22,235;DOID:14566,6.34e-21,239;DOID:0050687,1.21e-15,143;DOID:305,5.94e-13,106;DOID:0050686,3.37e-10,137 | |||
|ontology_enrichment_uberon=UBERON:0004121!3.70e-16!169;UBERON:0000924!5.69e-16!173;UBERON:0006601!5.69e-16!173;UBERON:0000153!6.72e-12!129;UBERON:0007811!6.72e-12!129;UBERON:0000033!1.48e-11!123;UBERON:0000064!1.86e-10!219;UBERON:0001049!2.71e-10!57;UBERON:0005068!2.71e-10!57;UBERON:0006241!2.71e-10!57;UBERON:0007135!2.71e-10!57;UBERON:0000955!9.17e-10!69;UBERON:0006238!9.17e-10!69;UBERON:0001017!1.18e-09!82;UBERON:0000073!1.51e-09!94;UBERON:0001016!1.51e-09!94;UBERON:0005743!1.11e-08!86;UBERON:0001004!1.45e-08!72;UBERON:0002616!2.06e-08!59;UBERON:0004119!2.44e-08!169;UBERON:0000925!2.44e-08!169;UBERON:0006595!2.44e-08!169;UBERON:0000475!3.73e-08!365;UBERON:0003080!1.17e-07!42;UBERON:0002780!1.23e-07!41;UBERON:0001890!1.23e-07!41;UBERON:0006240!1.23e-07!41;UBERON:0003102!1.70e-07!95;UBERON:0001007!4.79e-07!155;UBERON:0001555!4.79e-07!155;UBERON:0007026!4.79e-07!155;UBERON:0003075!7.88e-07!86;UBERON:0007284!7.88e-07!86;UBERON:0000065!9.06e-07!53 | |ontology_enrichment_uberon=UBERON:0004121!3.70e-16!169;UBERON:0000924!5.69e-16!173;UBERON:0006601!5.69e-16!173;UBERON:0000153!6.72e-12!129;UBERON:0007811!6.72e-12!129;UBERON:0000033!1.48e-11!123;UBERON:0000064!1.86e-10!219;UBERON:0001049!2.71e-10!57;UBERON:0005068!2.71e-10!57;UBERON:0006241!2.71e-10!57;UBERON:0007135!2.71e-10!57;UBERON:0000955!9.17e-10!69;UBERON:0006238!9.17e-10!69;UBERON:0001017!1.18e-09!82;UBERON:0000073!1.51e-09!94;UBERON:0001016!1.51e-09!94;UBERON:0005743!1.11e-08!86;UBERON:0001004!1.45e-08!72;UBERON:0002616!2.06e-08!59;UBERON:0004119!2.44e-08!169;UBERON:0000925!2.44e-08!169;UBERON:0006595!2.44e-08!169;UBERON:0000475!3.73e-08!365;UBERON:0003080!1.17e-07!42;UBERON:0002780!1.23e-07!41;UBERON:0001890!1.23e-07!41;UBERON:0006240!1.23e-07!41;UBERON:0003102!1.70e-07!95;UBERON:0001007!4.79e-07!155;UBERON:0001555!4.79e-07!155;UBERON:0007026!4.79e-07!155;UBERON:0003075!7.88e-07!86;UBERON:0007284!7.88e-07!86;UBERON:0000065!9.06e-07!53 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.95e-15,171;UBERON:0000924,3.95e-15,171;UBERON:0006601,3.95e-15,171;UBERON:0011216,1.44e-13,223;UBERON:0010371,1.27e-10,104;UBERON:0001016,1.49e-10,89;UBERON:0001049,2.33e-10,56;UBERON:0005068,2.33e-10,56;UBERON:0006241,2.33e-10,56;UBERON:0007135,2.33e-10,56;UBERON:0000955,8.33e-10,68;UBERON:0006238,8.33e-10,68;UBERON:0001017,1.10e-09,81;UBERON:0000073,1.77e-09,53;UBERON:0002616,1.77e-09,53;UBERON:0001004,3.10e-08,74;UBERON:0004119,5.47e-08,160;UBERON:0000925,5.47e-08,160;UBERON:0006595,5.47e-08,160;UBERON:0002780,1.03e-07,41;UBERON:0001890,1.03e-07,41;UBERON:0003080,1.03e-07,41;UBERON:0006240,1.03e-07,41;UBERON:0003102,1.28e-07,99;UBERON:0010314,8.67e-07,132;UBERON:0000065,8.89e-07,54 | |||
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| ||
|short_description=p1@GPSM2 | |short_description=p1@GPSM2 | ||
}} | }} |
Latest revision as of 20:25, 15 September 2015
Short description: | p1@GPSM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPSM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000264126, ENST00000435987, NM_013296, uc010ovc.1, uc010ovd.1, uc010ove.1_5end |
EntrezGene: | GPSM2 |
HGNC: | 29501 |
UniProt: | P81274Q5T1N9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.26e-08 | 253 |
endo-epithelial cell | 1.96e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.95e-15 | 171 |
ectoderm | 3.95e-15 | 171 |
presumptive ectoderm | 3.95e-15 | 171 |
organ system subdivision | 1.44e-13 | 223 |
ecto-epithelium | 1.27e-10 | 104 |
nervous system | 1.49e-10 | 89 |
neural tube | 2.33e-10 | 56 |
neural rod | 2.33e-10 | 56 |
future spinal cord | 2.33e-10 | 56 |
neural keel | 2.33e-10 | 56 |
brain | 8.33e-10 | 68 |
future brain | 8.33e-10 | 68 |
central nervous system | 1.10e-09 | 81 |
regional part of nervous system | 1.77e-09 | 53 |
regional part of brain | 1.77e-09 | 53 |
respiratory system | 3.10e-08 | 74 |
endoderm-derived structure | 5.47e-08 | 160 |
endoderm | 5.47e-08 | 160 |
presumptive endoderm | 5.47e-08 | 160 |
regional part of forebrain | 1.03e-07 | 41 |
forebrain | 1.03e-07 | 41 |
anterior neural tube | 1.03e-07 | 41 |
future forebrain | 1.03e-07 | 41 |
surface structure | 1.28e-07 | 99 |
structure with developmental contribution from neural crest | 8.67e-07 | 132 |
respiratory tract | 8.89e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.65e-22 | 235 |
disease of cellular proliferation | 6.34e-21 | 239 |
cell type cancer | 1.21e-15 | 143 |
carcinoma | 5.94e-13 | 106 |
organ system cancer | 3.37e-10 | 137 |