FFCP PHASE1:Hg19::chr5:145317356..145317369,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:145317356..145317369,+
|short_description=p6@SH3RF2
|description=CAGE_peak_6_at_SH3RF2_5end
|association_with_transcript=-16bp_to_uc011dbl.1_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=153769 | |EntrezGene=153769 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26299 | |HGNC=26299 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-16bp_to_uc011dbl.1_5end | |||
|cluster_id=chr5:145317356..145317369,+ | |||
|description=CAGE_peak_6_at_SH3RF2_5end | |||
|id=chr5:145317356..145317369,+ | |||
|ontology_enrichment_celltype=CL:0002076!5.88e-20!43;CL:0000223!1.89e-16!59;CL:0000066!2.56e-14!254;CL:0002251!2.96e-11!21;CL:0002368!2.45e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002623;1.75e-18;3!CL:0000244;2.76e-13;4!CL:0000731;2.76e-13;4!CL:0000622;2.68e-11;5!CL:0000154;1.72e-09;6!CL:0002328;1.04e-08;3!CL:0002076;1.71e-08;42!CL:0002368;2.21e-07;13!CL:0002251;3.66e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,3.16e-18,3;CL:0000244,1.88e-13,4;CL:0000731,1.88e-13,4;CL:0000622,3.80e-11,5;CL:0002076,1.04e-09,42;CL:0000154,2.29e-09,6;CL:0002328,1.10e-08,3;CL:0002368,2.74e-07,13;CL:0002251,4.16e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0006222;2.44e-07;1!UBERON:0006242;5.77e-07;1!UBERON:0005425;5.77e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;5.77e-07;1!DOID:4960;5.77e-07;1!DOID:0060061;5.77e-07;1!DOID:0070004;5.77e-07;1!DOID:8691;5.77e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,4.57e-07,1;DOID:0060061,4.57e-07,1;DOID:8691,4.57e-07,1;DOID:4960,6.49e-07,1;DOID:0070004,6.49e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001869!3.81e-14!32;UBERON:0001893!6.46e-13!34;UBERON:0002791!1.98e-12!33;UBERON:0002780!6.68e-12!41;UBERON:0001890!6.68e-12!41;UBERON:0006240!6.68e-12!41;UBERON:0002020!7.10e-12!34;UBERON:0003528!7.10e-12!34;UBERON:0003080!1.91e-11!42;UBERON:0004119!5.27e-10!169;UBERON:0000925!5.27e-10!169;UBERON:0006595!5.27e-10!169;UBERON:0003056!2.01e-09!61;UBERON:0000033!2.28e-09!123;UBERON:0000153!6.85e-09!129;UBERON:0007811!6.85e-09!129;UBERON:0002619!9.55e-09!22;UBERON:0001950!1.22e-08!20;UBERON:0000956!3.07e-08!25;UBERON:0000203!3.07e-08!25;UBERON:0000064!4.49e-08!219;UBERON:0004121!7.42e-08!169;UBERON:0000924!7.70e-08!173;UBERON:0006601!7.70e-08!173;UBERON:0000365!2.82e-07!5;UBERON:0000161!3.45e-07!35;UBERON:0009663!4.26e-07!7;UBERON:0002420!5.37e-07!9;UBERON:0007245!5.37e-07!9;UBERON:0010009!5.37e-07!9;UBERON:0010011!5.37e-07!9;UBERON:0000454!5.37e-07!9;UBERON:0001007!5.95e-07!155;UBERON:0001555!5.95e-07!155;UBERON:0007026!5.95e-07!155;UBERON:0000369!8.55e-07!4;UBERON:0002435!8.55e-07!4;UBERON:0000204!8.55e-07!4;UBERON:0010082!8.55e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000369;1.85e-14;4!UBERON:0002435;1.85e-14;4!UBERON:0000204;1.85e-14;4!UBERON:0009663;5.59e-14;7!UBERON:0002420;6.76e-11;9!UBERON:0000125;6.76e-11;9!UBERON:0007245;6.76e-11;9!UBERON:0002308;6.76e-11;9!UBERON:0010009;6.76e-11;9!UBERON:0010011;6.76e-11;9!UBERON:0000454;6.76e-11;9!UBERON:0000365;9.86e-11;5!UBERON:0001044;1.72e-09;6!UBERON:0003293;1.72e-09;6!UBERON:0003294;1.72e-09;6!UBERON:0010047;1.72e-09;6!UBERON:0003408;1.72e-09;6!UBERON:0000167;1.72e-09;6!UBERON:0005383;3.39e-09;3!UBERON:0005382;3.39e-09;3!UBERON:0005910;5.04e-09;6!UBERON:0004815;1.04e-08;3!UBERON:0002031;1.04e-08;3!UBERON:0005911;5.10e-08;36!UBERON:0000486;1.08e-07;12!UBERON:0000161;1.48e-07;19!UBERON:0000166;1.48e-07;19!UBERON:0001874;1.54e-07;1!UBERON:0001882;1.85e-07;1!UBERON:0005403;1.85e-07;1!UBERON:0000941;5.77e-07;1!UBERON:0001785;5.77e-07;1!UBERON:0002464;5.77e-07;1!UBERON:0004904;5.77e-07;1!UBERON:0001021;5.77e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,1.86e-14,4;UBERON:0002435,1.86e-14,4;UBERON:0000204,1.86e-14,4;UBERON:0010082,1.86e-14,4;UBERON:0009663,6.41e-14,7;UBERON:0000365,7.29e-11,5;UBERON:0002420,7.51e-11,9;UBERON:0000125,7.51e-11,9;UBERON:0007245,7.51e-11,9;UBERON:0002308,7.51e-11,9;UBERON:0010009,7.51e-11,9;UBERON:0010011,7.51e-11,9;UBERON:0000454,7.51e-11,9;UBERON:0001044,2.29e-09,6;UBERON:0003293,2.29e-09,6;UBERON:0003294,2.29e-09,6;UBERON:0010047,2.29e-09,6;UBERON:0000167,2.29e-09,6;UBERON:0005383,3.40e-09,3;UBERON:0005382,3.40e-09,3;UBERON:0005910,3.92e-09,6;UBERON:0004815,1.10e-08,3;UBERON:0002031,1.10e-08,3;UBERON:0001874,1.55e-07,1;UBERON:0001882,1.86e-07,1;UBERON:0005403,1.86e-07,1;UBERON:0000941,4.06e-07,1;UBERON:0001785,4.06e-07,1;UBERON:0002464,4.06e-07,1;UBERON:0004904,4.06e-07,1;UBERON:0001021,4.06e-07,1;UBERON:0003902,4.06e-07,1;UBERON:0005425,4.06e-07,1 | |||
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| ||
|short_description=p6@SH3RF2 | |||
}} | }} |
Latest revision as of 19:52, 15 September 2015
Short description: | p6@SH3RF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SH3RF2_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_uc011dbl.1_5end |
EntrezGene: | SH3RF2 |
HGNC: | 26299 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 3.16e-18 | 3 |
transitional epithelial cell | 1.88e-13 | 4 |
urothelial cell | 1.88e-13 | 4 |
acinar cell | 3.80e-11 | 5 |
endo-epithelial cell | 1.04e-09 | 42 |
protein secreting cell | 2.29e-09 | 6 |
bronchial epithelial cell | 1.10e-08 | 3 |
respiratory epithelial cell | 2.74e-07 | 13 |
epithelial cell of alimentary canal | 4.16e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 1.86e-14 | 4 |
striatum | 1.86e-14 | 4 |
ventral part of telencephalon | 1.86e-14 | 4 |
future corpus striatum | 1.86e-14 | 4 |
telencephalic nucleus | 6.41e-14 | 7 |
urothelium | 7.29e-11 | 5 |
basal ganglion | 7.51e-11 | 9 |
neural nucleus | 7.51e-11 | 9 |
nuclear complex of neuraxis | 7.51e-11 | 9 |
nucleus of brain | 7.51e-11 | 9 |
aggregate regional part of brain | 7.51e-11 | 9 |
collection of basal ganglia | 7.51e-11 | 9 |
cerebral subcortex | 7.51e-11 | 9 |
saliva-secreting gland | 2.29e-09 | 6 |
gland of oral region | 2.29e-09 | 6 |
gland of foregut | 2.29e-09 | 6 |
oral gland | 2.29e-09 | 6 |
oral cavity | 2.29e-09 | 6 |
caudate-putamen | 3.40e-09 | 3 |
dorsal striatum | 3.40e-09 | 3 |
transitional epithelium | 3.92e-09 | 6 |
lower respiratory tract epithelium | 1.10e-08 | 3 |
epithelium of bronchus | 1.10e-08 | 3 |
putamen | 1.55e-07 | 1 |
nucleus accumbens | 1.86e-07 | 1 |
ventral striatum | 1.86e-07 | 1 |
cranial nerve II | 4.06e-07 | 1 |
cranial nerve | 4.06e-07 | 1 |
nerve trunk | 4.06e-07 | 1 |
nerve connecting eye with brain | 4.06e-07 | 1 |
nerve | 4.06e-07 | 1 |
retinal neural layer | 4.06e-07 | 1 |
presumptive neural retina | 4.06e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 4.57e-07 | 1 |
cutaneous T cell lymphoma | 4.57e-07 | 1 |
mycosis fungoides | 4.57e-07 | 1 |
bone marrow cancer | 6.49e-07 | 1 |
myeloma | 6.49e-07 | 1 |