FFCP PHASE1:Hg19::chr4:141348789..141348819,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1047 | |EntrezGene=1047 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2060 | |HGNC=2060 | ||
|TSSclassifier=strong | |||
|UniProt=O14967,B4DRG2 | |UniProt=O14967,B4DRG2 | ||
|association_with_transcript=0bp_to_ENST00000414773,ENST00000545667,NM_001130675,NM_004362,uc003iii.2,uc011chi.1_5end | |association_with_transcript=0bp_to_ENST00000414773,ENST00000545667,NM_001130675,NM_004362,uc003iii.2,uc011chi.1_5end | ||
|cluster_id=chr4:141348789..141348819,- | |||
|description=CAGE_peak_1_at_CLGN_5end | |description=CAGE_peak_1_at_CLGN_5end | ||
|id=chr4:141348789..141348819,- | |id=chr4:141348789..141348819,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.14e-10!143;DOID:14566!1.08e-09!239;DOID:162!1.57e-08!235;DOID:305!1.09e-07!106 | |ontology_enrichment_disease=DOID:0050687!2.14e-10!143;DOID:14566!1.08e-09!239;DOID:162!1.57e-08!235;DOID:305!1.09e-07!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.09e-09,143;DOID:14566,6.84e-09,239;DOID:162,1.01e-07,235;DOID:305,4.88e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000481!4.56e-14!347;UBERON:0000483!2.05e-11!309;UBERON:0002346!6.54e-11!90;UBERON:0000119!6.86e-11!312;UBERON:0000475!7.91e-11!365;UBERON:0000073!2.38e-10!94;UBERON:0001016!2.38e-10!94;UBERON:0003075!2.89e-10!86;UBERON:0007284!2.89e-10!86;UBERON:0000468!6.52e-09!659;UBERON:0003056!9.00e-09!61;UBERON:0005743!1.14e-08!86;UBERON:0001048!2.10e-08!168;UBERON:0000922!2.27e-08!612;UBERON:0000025!2.74e-08!194;UBERON:0000480!4.59e-08!626;UBERON:0000467!5.87e-08!625;UBERON:0001049!8.71e-08!57;UBERON:0005068!8.71e-08!57;UBERON:0006241!8.71e-08!57;UBERON:0007135!8.71e-08!57;UBERON:0001017!1.36e-07!82;UBERON:0000923!1.37e-07!604;UBERON:0005291!1.37e-07!604;UBERON:0006598!1.37e-07!604;UBERON:0002532!1.37e-07!604;UBERON:0002050!1.53e-07!605;UBERON:0005423!1.53e-07!605;UBERON:0000477!1.94e-07!286;UBERON:0002616!7.96e-07!59;UBERON:0004111!9.83e-07!241 | |ontology_enrichment_uberon=UBERON:0000481!4.56e-14!347;UBERON:0000483!2.05e-11!309;UBERON:0002346!6.54e-11!90;UBERON:0000119!6.86e-11!312;UBERON:0000475!7.91e-11!365;UBERON:0000073!2.38e-10!94;UBERON:0001016!2.38e-10!94;UBERON:0003075!2.89e-10!86;UBERON:0007284!2.89e-10!86;UBERON:0000468!6.52e-09!659;UBERON:0003056!9.00e-09!61;UBERON:0005743!1.14e-08!86;UBERON:0001048!2.10e-08!168;UBERON:0000922!2.27e-08!612;UBERON:0000025!2.74e-08!194;UBERON:0000480!4.59e-08!626;UBERON:0000467!5.87e-08!625;UBERON:0001049!8.71e-08!57;UBERON:0005068!8.71e-08!57;UBERON:0006241!8.71e-08!57;UBERON:0007135!8.71e-08!57;UBERON:0001017!1.36e-07!82;UBERON:0000923!1.37e-07!604;UBERON:0005291!1.37e-07!604;UBERON:0006598!1.37e-07!604;UBERON:0002532!1.37e-07!604;UBERON:0002050!1.53e-07!605;UBERON:0005423!1.53e-07!605;UBERON:0000477!1.94e-07!286;UBERON:0002616!7.96e-07!59;UBERON:0004111!9.83e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;5.58e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.79e-11,86;UBERON:0003075,9.20e-11,82;UBERON:0007284,9.20e-11,82;UBERON:0000483,2.74e-10,306;UBERON:0000119,1.02e-09,309;UBERON:0001016,1.24e-09,89;UBERON:0003056,4.21e-09,61;UBERON:0000073,2.84e-08,53;UBERON:0002616,2.84e-08,53;UBERON:0001049,3.69e-08,56;UBERON:0005068,3.69e-08,56;UBERON:0006241,3.69e-08,56;UBERON:0007135,3.69e-08,56;UBERON:0011216,6.27e-08,223;UBERON:0000025,6.90e-08,192;UBERON:0001017,1.13e-07,81;UBERON:0010314,1.23e-07,132;UBERON:0007625,5.65e-07,11;UBERON:0005156,9.15e-07,59;UBERON:0000990,9.15e-07,59 | |||
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|phase1_expression=0.181678379270557,0.214100523890983,1.40954404095971,0,0.446961094427288,0,0,3.79031924056099,0.522371256399677,0.491467873003018,0,0,0,82.6759237773112,39.7676850873499,4.70627602516243,3.01347264011988,2.19093027116212,2.92759679274304,3.0780264519197,0.612002073732759,1.25381888591235,14.3117993565528,10.2655818804663,10.0434111675842,0,0.164201178899891,0,0.393364276848904,0,0,0,0,1.10926203050036,0,0,10.2760153767197,0,0,0,0,0.32389366601898,0,0,0,0,0,0.411167888021826,0,0.28769239232215,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580418477257168,1.70215567407342,0.622822248995575,0,0,0,0,0,2.21523671208619,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0.764546456250458,3.96513985737078,1.68152568894461,9.74521113667785,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.511450247374121,0,0,0.724232594804119,0.795285947051099,3.89307896242109,32.047303018619,12.8603050528287,11.4185221401064,28.6844175339991,0,0,0,0,0,0.476981248610684,1.14398982156026,0.371457501329565,0.198762407366705,0.860234595106124,0,0,0,0,0,3.6178346283706,7.1153252537342,3.68192674041137,0.402829317109147,0,0,0.367663080345869,0,4.01848777278359,1.34717623575702,2.36484109014977,0,0,0.549605231791222,0,0,0,0,2.02608818663328,4.8991396900891,14.3418310374407,1.77334191099179,1.12135520028461,0,0.24666754841716,0.311211035399766,0.269421344139376,0,0.302714855289863,0,0.937285727335186,3.1216007683032,1.1409436430889,4.48346041655403,4.11020745253177,0.809364721840658,1.54495887372473,5.71631679513701,7.24722472139431,10.0226007740492,0,0.247266929278557,0,0,6.39677233025452,2.25213335769535,3.04770527032601,0.877955241761676,0,0.45071417671979,0.113432183160021,1.25572744982203,0.85422955527427,0.847727604638247,3.30100205692843,1.8549455262919,0.515281080091258,0.18611685633159,15.0210935694727,2.43592512902997,1.7670364197088,2.66944706062668,0.161646056818812,3.55009592516614,0.806016785821122,0.508681776931463,0,0,0,2.31750041646231,5.03613119621644,2.90484857173796,6.3233243559376,4.54177531576131,5.10968302706162,0,3.85944562915731,0,0,0,1.41968160047813,0.674338760312407,0.964044119533928,1.21323370005633,2.61455332910887,3.55905928666645,1.34831308160164,1.76599318612811,1.15424147083917,0,0,0,0,1.26755034821831,11.7939266001315,12.9973779469909,0,0.614942192715568,27.6224174580626,0,0,0.100528972411631,0.0925884451585296,0.977424915930974,2.07986957055916,18.7630744632855,42.198667410928,4.22671299248958,0.144366447761074,0,0.761016608938393,0,0.858486162094873,0,0,0,0,0,0,0,0,0.383382679165211,2.95597942737566,0.616339038092582,0.621984346622316,2.30591925467138,0.37872730027914,0.063497894292169,0,0,1.71072446022705,0,0,0,0.112131084345361,0,0.22001485746285,1.42198887333556,0,0,1.32969058292435,0,0,0,0.266422179016099,3.14551586047925,0,0,0,6.75244702610837,0,0.602878754119172,0.871533458600294,0.099972991182057,0,0,0,0,0,18.5427976552934,3.04040744001916,11.0957214177207,4.47652408099739,0,0,0,0,4.57370323600434,9.10978977003352,5.41302168944387,11.3911060427357,1.27587750330633,0,0,0.414415513436035,32.3905538138529,0.500170521059677,12.4781910901878,0,0.713715955188647,0,0.702848489956279,2.10662269809403,2.27407504055985,16.5556914068008,11.2918351751024,1.29058417979192,7.21134000085088,0,0,0.206768026122887,0,0.213455115606889,0,0,0,0.248107807818777,0.61384789315225,0.561320188866147,4.86928767171664,0.511707249066704,0.321707842287215,0,9.09837193435668,12.2517590466058,33.5078796536341,17.1353961630595,11.388617089076,3.38406458856542,0,16.022092074846,9.52959919766236,3.45973219212762,5.37610101333639,1.80479845162965,10.9361778688269,2.35304930753057,1.46139224653261,10.2385080026089,0,1.02056223165909,0.863663664408557,0,1.08378575017541,3.01013864312912,1.52925763827023,2.49322802678617,2.23874754722178,3.06963827304308,0.784306353074702,29.4917643883848,4.92021968549559,34.1647314397518,0.721287081534056,21.7019631619474,33.5813664676793,0.574265537996172,0,8.03419649220798,21.4608994608511,0.924291702687866,0.767518373630648,1.10269257987624,2.90034661144339,2.46528379654188,2.98293195956353,2.67096106940212,8.92538542949282,4.42037154939744,0.255225424989168,24.8848140904653,0.929691098594572,51.3144125333943,23.0022299152998,1.84820148105653,1.06461206063404,20.8783918098017,3.7064843820784,0.715624433709956,1.116475108079,1.2655176988749,0.38126038784765,1.535386747868,7.27496279657665,3.81843897511124,0,3.23770423649967,8.5106479218177,3.53437207037059,1.61745985258653,4.75530963519025,5.05510147486777,0.975267478179181,7.55511817856982,1.05650146756755,7.6439950388472,4.66637925447252,0,2.75682671773062,5.97095077717098,4.82295973779139,1.73632660280006,7.87073702455959,2.84074527747786,3.717881977197,1.40847801266121,3.44187245289724,0.491245205065606,1.78335525740625,32.638017894495,16.0441802826225,0.987884678879706,1.13841952129715,0,3.36777394539292,0,1.08890984861323,0.376575203107117,0.43050537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| ||
|short_description=p1@CLGN | |short_description=p1@CLGN | ||
}} | }} |
Latest revision as of 19:37, 15 September 2015
Short description: | p1@CLGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CLGN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000414773, ENST00000545667, NM_001130675, NM_004362, uc003iii.2, uc011chi.1_5end |
EntrezGene: | CLGN |
HGNC: | 2060 |
UniProt: | O14967B4DRG2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.79e-11 | 86 |
neural plate | 9.20e-11 | 82 |
presumptive neural plate | 9.20e-11 | 82 |
epithelium | 2.74e-10 | 306 |
cell layer | 1.02e-09 | 309 |
nervous system | 1.24e-09 | 89 |
pre-chordal neural plate | 4.21e-09 | 61 |
regional part of nervous system | 2.84e-08 | 53 |
regional part of brain | 2.84e-08 | 53 |
neural tube | 3.69e-08 | 56 |
neural rod | 3.69e-08 | 56 |
future spinal cord | 3.69e-08 | 56 |
neural keel | 3.69e-08 | 56 |
organ system subdivision | 6.27e-08 | 223 |
tube | 6.90e-08 | 192 |
central nervous system | 1.13e-07 | 81 |
structure with developmental contribution from neural crest | 1.23e-07 | 132 |
pigment epithelium of eye | 5.65e-07 | 11 |
reproductive structure | 9.15e-07 | 59 |
reproductive system | 9.15e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.09e-09 | 143 |
disease of cellular proliferation | 6.84e-09 | 239 |
cancer | 1.01e-07 | 235 |
carcinoma | 4.88e-07 | 106 |