FFCP PHASE1:Hg19::chr5:143550159..143550236,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:143550159..143550236,- to FFCP PHASE1:Hg19::chr5:143550159..143550236,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=81555 | |EntrezGene=81555 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24877 | |HGNC=24877 | ||
|TSSclassifier=strong | |||
|UniProt=Q969M3,E5RHH4,F5H3P9 | |UniProt=Q969M3,E5RHH4,F5H3P9 | ||
|association_with_transcript=0bp_to_ENST00000274496,ENST00000377986,ENST00000448443,ENST00000508754,ENST00000513112,ENST00000519064,ENST00000536767_5end | |||
|cluster_id=chr5:143550159..143550236,- | |||
|coexpression_cluster_id=C811 | |||
|description=CAGE_peak_1_at_YIPF5_5end | |||
|id=chr5:143550159..143550236,- | |||
|ontology_enrichment_celltype=CL:0000055!5.97e-19!180;CL:0000057!1.05e-15!75;CL:0000680!3.37e-11!57;CL:0000056!3.37e-11!57;CL:0000355!3.37e-11!57;CL:0000187!1.35e-10!54;CL:0000359!6.99e-10!32;CL:0000192!1.25e-09!42;CL:0000514!1.25e-09!42;CL:0002620!2.79e-09!23;CL:0000393!7.56e-08!60;CL:0000211!7.56e-08!60;CL:0000222!1.42e-07!119;CL:0000183!2.02e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.64e-09;23!CL:0000359;3.24e-09;32!CL:0000134;3.27e-07;55!CL:0000192;3.32e-07;43!CL:0000057;7.01e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.90e-16,76;CL:0000680,1.58e-11,58;CL:0000056,1.58e-11,58;CL:0000355,1.58e-11,58;CL:0000187,6.34e-11,55;CL:0000192,5.81e-10,43;CL:0000514,5.81e-10,43;CL:0000359,6.99e-10,32;CL:0002620,2.79e-09,23;CL:0000393,3.89e-08,61;CL:0000211,3.89e-08,61;CL:0000222,1.53e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;3.32e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!9.91e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.91e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.41e-15!83;UBERON:0002329!5.41e-15!83;UBERON:0003077!5.41e-15!83;UBERON:0003059!5.41e-15!83;UBERON:0007282!5.41e-15!83;UBERON:0009618!5.41e-15!83;UBERON:0007285!5.41e-15!83;UBERON:0000468!6.53e-12!659;UBERON:0004290!2.65e-11!70;UBERON:0000480!3.08e-10!626;UBERON:0000475!3.42e-10!365;UBERON:0000486!3.79e-10!82;UBERON:0002385!4.18e-10!63;UBERON:0001015!4.18e-10!63;UBERON:0000383!4.18e-10!63;UBERON:0000467!4.30e-10!625;UBERON:0001134!4.89e-10!61;UBERON:0002036!4.89e-10!61;UBERON:0003082!4.89e-10!61;UBERON:0003102!5.02e-10!95;UBERON:0005256!1.66e-08!143;UBERON:0002199!1.82e-08!45;UBERON:0002416!1.82e-08!45;UBERON:0002097!7.24e-08!40;UBERON:0001637!9.26e-08!42;UBERON:0003509!9.26e-08!42;UBERON:0004572!9.26e-08!42;UBERON:0004872!1.76e-07!84;UBERON:0000490!2.94e-07!138;UBERON:0004573!6.36e-07!33;UBERON:0004571!6.36e-07!33;UBERON:0002100!7.15e-07!216;UBERON:0000481!9.38e-07!347 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,6.75e-12,73;UBERON:0002329,1.28e-11,71;UBERON:0003059,1.28e-11,71;UBERON:0007282,1.28e-11,71;UBERON:0004290,1.28e-11,71;UBERON:0009618,1.28e-11,71;UBERON:0003077,1.66e-11,72;UBERON:0007285,1.66e-11,72;UBERON:0003102,2.84e-11,99;UBERON:0000486,1.92e-10,83;UBERON:0002385,2.04e-10,64;UBERON:0001015,2.04e-10,64;UBERON:0000383,2.04e-10,64;UBERON:0001134,2.37e-10,62;UBERON:0002036,2.37e-10,62;UBERON:0003082,2.37e-10,62;UBERON:0002199,7.07e-09,46;UBERON:0002416,7.07e-09,46;UBERON:0000490,1.34e-08,148;UBERON:0002097,2.80e-08,41;UBERON:0007503,3.85e-08,78;UBERON:0005256,5.91e-08,122;UBERON:0001637,9.26e-08,42;UBERON:0003509,9.26e-08,42;UBERON:0004572,9.26e-08,42;UBERON:0002050,3.65e-07,564;UBERON:0004872,4.25e-07,83;UBERON:0004573,6.36e-07,33;UBERON:0004571,6.36e-07,33 | |||
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| ||
|short_description=p1@YIPF5 | |||
}} | }} |
Latest revision as of 18:33, 15 September 2015
Short description: | p1@YIPF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_YIPF5_5end |
Coexpression cluster: | C811_Smooth_Fibroblast_Preadipocyte_Chondrocyte_hepatic_basal_Adipocyte |
Association with transcript: | 0bp_to_ENST00000274496, ENST00000377986, ENST00000448443, ENST00000508754, ENST00000513112, ENST00000519064, ENST00000536767_5end |
EntrezGene: | YIPF5 |
HGNC: | 24877 |
UniProt: | Q969M3E5RHH4F5H3P9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.90e-16 | 76 |
muscle precursor cell | 1.58e-11 | 58 |
myoblast | 1.58e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.58e-11 | 58 |
muscle cell | 6.34e-11 | 55 |
smooth muscle cell | 5.81e-10 | 43 |
smooth muscle myoblast | 5.81e-10 | 43 |
vascular associated smooth muscle cell | 6.99e-10 | 32 |
skin fibroblast | 2.79e-09 | 23 |
electrically responsive cell | 3.89e-08 | 61 |
electrically active cell | 3.89e-08 | 61 |
mesodermal cell | 1.53e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 6.75e-12 | 73 |
somite | 1.28e-11 | 71 |
presomitic mesoderm | 1.28e-11 | 71 |
presumptive segmental plate | 1.28e-11 | 71 |
dermomyotome | 1.28e-11 | 71 |
trunk paraxial mesoderm | 1.28e-11 | 71 |
paraxial mesoderm | 1.66e-11 | 72 |
presumptive paraxial mesoderm | 1.66e-11 | 72 |
surface structure | 2.84e-11 | 99 |
multilaminar epithelium | 1.92e-10 | 83 |
muscle tissue | 2.04e-10 | 64 |
musculature | 2.04e-10 | 64 |
musculature of body | 2.04e-10 | 64 |
skeletal muscle tissue | 2.37e-10 | 62 |
striated muscle tissue | 2.37e-10 | 62 |
myotome | 2.37e-10 | 62 |
integument | 7.07e-09 | 46 |
integumental system | 7.07e-09 | 46 |
unilaminar epithelium | 1.34e-08 | 148 |
skin of body | 2.80e-08 | 41 |
epithelial vesicle | 3.85e-08 | 78 |
trunk mesenchyme | 5.91e-08 | 122 |
artery | 9.26e-08 | 42 |
arterial blood vessel | 9.26e-08 | 42 |
arterial system | 9.26e-08 | 42 |
embryonic structure | 3.65e-07 | 564 |
splanchnic layer of lateral plate mesoderm | 4.25e-07 | 83 |
systemic artery | 6.36e-07 | 33 |
systemic arterial system | 6.36e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.91e-07 | 14 |