FFCP PHASE1:Mm9::chr15:98918857..98918860,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=224 | |MCL_coexpression_id=224 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr15:98918857..98918860,- | |||
|description=CAGE_peak_at_chr15:98918857..98918860,- | |description=CAGE_peak_at_chr15:98918857..98918860,- | ||
|id=chr15:98918857..98918860,- | |id=chr15:98918857..98918860,- | ||
|ontology_enrichment_celltype=CL:0000117!5.95e-14!23;CL:0000337!5.95e-14!23;CL:0000540!1.04e-07!33;CL:0000047!1.04e-07!33;CL:0000031!1.04e-07!33;CL:0000404!1.04e-07!33;CL:0000393!4.03e-07!39;CL:0000211!4.03e-07!39 | |ontology_enrichment_celltype=CL:0000117!5.95e-14!23;CL:0000337!5.95e-14!23;CL:0000540!1.04e-07!33;CL:0000047!1.04e-07!33;CL:0000031!1.04e-07!33;CL:0000404!1.04e-07!33;CL:0000393!4.03e-07!39;CL:0000211!4.03e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.25e-27,23;CL:0000337,5.25e-27,23;CL:0000540,7.92e-18,33;CL:0000047,7.92e-18,33;CL:0000031,7.92e-18,33;CL:0000404,7.92e-18,33;CL:0000393,1.40e-14,39;CL:0000211,1.40e-14,39;CL:0002319,6.38e-13,43;CL:0000221,1.49e-12,44;CL:0000133,1.49e-12,44;CL:0000120,1.08e-10,3;CL:0002613,6.61e-10,3;CL:0002610,1.22e-09,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.06e-12,73;UBERON:0000073,2.43e-12,54;UBERON:0001016,5.76e-12,75;UBERON:0004121,1.03e-10,95;UBERON:0000924,1.03e-10,95;UBERON:0006601,1.03e-10,95;UBERON:0004684,1.22e-09,3;UBERON:0002275,1.22e-09,3;UBERON:0001948,1.41e-09,5;UBERON:0002315,1.41e-09,5;UBERON:0002420,2.06e-09,8;UBERON:0007245,2.06e-09,8;UBERON:0010009,2.06e-09,8;UBERON:0010011,2.06e-09,8;UBERON:0000454,2.06e-09,8;UBERON:0002346,2.37e-08,64;UBERON:0003075,2.37e-08,64;UBERON:0007284,2.37e-08,64;UBERON:0001049,2.64e-08,52;UBERON:0005068,2.64e-08,52;UBERON:0006241,2.64e-08,52;UBERON:0007135,2.64e-08,52;UBERON:0003076,4.25e-08,12;UBERON:0003057,4.25e-08,12;UBERON:0002240,5.47e-08,6;UBERON:0005174,5.47e-08,6;UBERON:0001137,5.47e-08,6;UBERON:0002950,2.05e-07,4;UBERON:0001891,2.05e-07,4;UBERON:0009616,2.05e-07,4;UBERON:0010286,2.05e-07,4;UBERON:0010371,6.41e-07,73 | |||
|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0.234064526321993,0,0,0.171200729931206,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0,0.515672092277442,20.2316460859598,19.0436752537932,20.2826049121977,0,0,0,0,0,0,0,0,0,0,1.71390590642282,2.65042249141936,0.244981598429908,0.191690942036473,0,1.10115880999389,6.12899222808901,10.5988507946808,4.61602007055678,5.12330804173494,2.6045668527838,13.959149950069,1.68828783009504,0.15279824777681,0.883885756421003,2.56269025438385,3.16879057903011,0.075726193333184,0,0.289864488701678,0,0,0.539703191637817,0.649776417447669,0,0.140444420131752,0,0,0.35333957451034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.89455662452539,0,0.125654352112864,0,0,3.53239675751252,2.27137768294861,0,0,3.0326731012041,0,0,0,0,0.753524089178575,0.748401490664606,1.5373646434182,1.12442069471675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473489471170421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13800740571849,0.342745537829186,0,0.610953983535943,0.969762435838129,0.561086559122548,0.316182685621286,0.147610147979602,0,0,0.296452627087149,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60550589987792,2.22702204525186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0,0,0.177340233642274,0.356737635204141,0.164549020602121,0,0.23467170806371,0.42366414172764,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0.147689527174577,0.100966449948148,0.15241361331,0,0,0,0,0,4.66170502085536,0.807424709485281,3.69346156000973,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14166082342594,2.39414924040619,1.02440163452481,0,0.209613162627982,0.367687016900028,0.44449345560323,0,0.962757628775446,0.252697211763798,0.25347929989024,0,0.37456602987953,0.512201219238954,0.402048282689293,0,0.347652977834566,0.964546102318525,0,0.588795680537589,0,0,0.476872379894642,0.145346416632329,0.188218760830661,0.25384382367503,0.365855945745545,0.263069711437843,0.543216455383447,1.68342681497322,0.118635018124174,0.394017929502254,0.409231043169689,0.619747364743864,0.385813221962283,1.74867404556562,0.233931608445408,0.429742108096597,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0.234064526321993,0,0,0.171200729931206,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0,0.515672092277442,20.2316460859598,19.0436752537932,20.2826049121977,0,0,0,0,0,0,0,0,0,0,1.71390590642282,2.65042249141936,0.244981598429908,0.191690942036473,0,1.10115880999389,6.12899222808901,10.5988507946808,4.61602007055678,5.12330804173494,2.6045668527838,13.959149950069,1.68828783009504,0.15279824777681,0.883885756421003,2.56269025438385,3.16879057903011,0.075726193333184,0,0.289864488701678,0,0,0.539703191637817,0.649776417447669,0,0.140444420131752,0,0,0.35333957451034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.89455662452539,0,0.125654352112864,0,0,3.53239675751252,2.27137768294861,0,0,3.0326731012041,0,0,0,0,0.753524089178575,0.748401490664606,1.5373646434182,1.12442069471675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473489471170421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13800740571849,0.342745537829186,0,0.610953983535943,0.969762435838129,0.561086559122548,0.316182685621286,0.147610147979602,0,0,0.296452627087149,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60550589987792,2.22702204525186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0,0,0.177340233642274,0.356737635204141,0.164549020602121,0,0.23467170806371,0.42366414172764,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0.147689527174577,0.100966449948148,0.15241361331,0,0,0,0,0,4.66170502085536,0.807424709485281,3.69346156000973,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14166082342594,2.39414924040619,1.02440163452481,0,0.209613162627982,0.367687016900028,0.44449345560323,0,0.962757628775446,0.252697211763798,0.25347929989024,0,0.37456602987953,0.512201219238954,0.402048282689293,0,0.347652977834566,0.964546102318525,0,0.588795680537589,0,0,0.476872379894642,0.145346416632329,0.188218760830661,0.25384382367503,0.365855945745545,0.263069711437843,0.543216455383447,1.68342681497322,0.118635018124174,0.394017929502254,0.409231043169689,0.619747364743864,0.385813221962283,1.74867404556562,0.233931608445408,0.429742108096597,0,0,0 | ||
|short_description=p@chr15:98918857..98918860,- | |short_description=p@chr15:98918857..98918860,- | ||
}} | }} |
Latest revision as of 23:52, 5 August 2015
Short description: | p@chr15:98918857..98918860, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:98918857..98918860, - |
Coexpression cluster: | MCL_coexpression_mm9:224 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.25e-27 | 23 |
neuroblast (sensu Vertebrata) | 5.25e-27 | 23 |
neuron | 7.92e-18 | 33 |
neuronal stem cell | 7.92e-18 | 33 |
neuroblast | 7.92e-18 | 33 |
electrically signaling cell | 7.92e-18 | 33 |
electrically responsive cell | 1.40e-14 | 39 |
electrically active cell | 1.40e-14 | 39 |
neural cell | 6.38e-13 | 43 |
ectodermal cell | 1.49e-12 | 44 |
neurectodermal cell | 1.49e-12 | 44 |
granule cell | 1.08e-10 | 3 |
striatum neuron | 6.61e-10 | 3 |
raphe nuclei neuron | 1.22e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.06e-12 | 73 |
regional part of nervous system | 2.43e-12 | 54 |
nervous system | 5.76e-12 | 75 |
ectoderm-derived structure | 1.03e-10 | 95 |
ectoderm | 1.03e-10 | 95 |
presumptive ectoderm | 1.03e-10 | 95 |
raphe nuclei | 1.22e-09 | 3 |
reticular formation | 1.22e-09 | 3 |
regional part of spinal cord | 1.41e-09 | 5 |
gray matter of spinal cord | 1.41e-09 | 5 |
basal ganglion | 2.06e-09 | 8 |
nuclear complex of neuraxis | 2.06e-09 | 8 |
aggregate regional part of brain | 2.06e-09 | 8 |
collection of basal ganglia | 2.06e-09 | 8 |
cerebral subcortex | 2.06e-09 | 8 |
neurectoderm | 2.37e-08 | 64 |
neural plate | 2.37e-08 | 64 |
presumptive neural plate | 2.37e-08 | 64 |
neural tube | 2.64e-08 | 52 |
neural rod | 2.64e-08 | 52 |
future spinal cord | 2.64e-08 | 52 |
neural keel | 2.64e-08 | 52 |
posterior neural tube | 4.25e-08 | 12 |
chordal neural plate | 4.25e-08 | 12 |
spinal cord | 5.47e-08 | 6 |
dorsal region element | 5.47e-08 | 6 |
dorsum | 5.47e-08 | 6 |
regional part of midbrain | 2.05e-07 | 4 |
midbrain | 2.05e-07 | 4 |
presumptive midbrain | 2.05e-07 | 4 |
midbrain neural tube | 2.05e-07 | 4 |
ecto-epithelium | 6.41e-07 | 73 |