FFCP PHASE1:Mm9::chr12:81619544..81619562,+: Difference between revisions
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{{FFCP|EntrezGene=108760|HGNC=|MCL_coexpression_id=283|UniProt=|association_with_transcript=86bp_to_uc007oaw.1_5end|description=CAGE_peak_3_at_Galntl1_5end|id=chr12:81619544..81619562,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002319,4.87e-15,43;CL:0000221,1.28e-14,44;CL:0000133,1.28e-14,44;CL:0002453,5.22e-14,8;CL:0000128,4.19e-13,6;CL:0000126,4.19e-13,6;CL:0000127,4.19e-13,6;CL:0000117,2.67e-11,23;CL:0000337,2.67e-11,23;CL:0000333,4.50e-11,10;CL:0000095,4.50e-11,10;CL:0000243,4.50e-11,10;CL:0000123,4.50e-11,10;CL:0000125,4.50e-11,10;CL:0000030,4.50e-11,10;CL:0000339,4.50e-11,10;CL:0002610,1.83e-10,3;CL:0002614,2.22e-09,3;CL:0002321,4.04e-09,70;CL:0002605,2.21e-07,2;CL:0002604,2.21e-07,2;CL:0000540,2.46e-07,33;CL:0000047,2.46e-07,33;CL:0000031,2.46e-07,33;CL:0000404,2.46e-07,33;CL:0000393,3.17e-07,39;CL:0000211,3.17e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.50e-11!102;UBERON:0000924!2.50e-11!102;UBERON:0006601!2.50e-11!102;UBERON:0001017!7.95e-11!73;UBERON:0005743!7.95e-11!73;UBERON:0000073!1.75e-10!75;UBERON:0001016!1.75e-10!75;UBERON:0001049!5.17e-09!52;UBERON:0005068!5.17e-09!52;UBERON:0006241!5.17e-09!52;UBERON:0007135!5.17e-09!52;UBERON:0002346!1.88e-08!71;UBERON:0003075!1.88e-08!71;UBERON:0007284!1.88e-08!71;UBERON:0000033!3.04e-08!63;UBERON:0000955!4.38e-08!50;UBERON:0006238!4.38e-08!50;UBERON:0002616!7.53e-08!49|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.30e-19,73;UBERON:0001016,5.83e-19,75;UBERON:0000073,1.14e-14,54;UBERON:0004121,6.02e-14,95;UBERON:0000924,6.02e-14,95;UBERON:0006601,6.02e-14,95;UBERON:0002950,2.89e-12,4;UBERON:0001891,2.89e-12,4;UBERON:0009616,2.89e-12,4;UBERON:0010286,2.89e-12,4;UBERON:0001049,1.16e-11,52;UBERON:0005068,1.16e-11,52;UBERON:0006241,1.16e-11,52;UBERON:0007135,1.16e-11,52;UBERON:0004684,1.83e-10,3;UBERON:0002275,1.83e-10,3;UBERON:0002038,2.22e-09,3;UBERON:0009663,2.22e-09,3;UBERON:0009661,2.22e-09,3;UBERON:0000125,2.22e-09,3;UBERON:0002308,2.22e-09,3;UBERON:0002346,7.47e-09,64;UBERON:0003075,7.47e-09,64;UBERON:0007284,7.47e-09,64;UBERON:0003076,8.47e-09,12;UBERON:0003057,8.47e-09,12;UBERON:0002616,1.31e-08,46;UBERON:0000955,2.26e-08,47;UBERON:0006238,2.26e-08,47;UBERON:0010371,2.33e-07,73;UBERON:0001896,3.62e-07,2;UBERON:0002298,3.62e-07,2;UBERON:0005290,3.62e-07,2;UBERON:0010096,3.62e-07,2|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.183546752161682,0,3.92445281484804,3.07560655828261,2.3331587888914,2.37976916763116,1.43752564364972,0,0,0,0.257259436035947,1.43266719969378,0.515672092277442,0.606949382578793,1.05798195854407,1.90149421051854,0,0,0,0,0,0.599200221036809,4.2264013585371,0,0,0,0.856952953211411,1.54607978666129,0,0.0958454710182364,0,4.40463523997555,2.042997409363,2.91852413186863,0.131886287730194,0.182975287204819,0.52091337055676,1.67509799400829,1.12552522006336,1.68078072554491,1.17851434189467,0.854230084794618,0.559198337475902,0.151452386666368,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0.258937883647172,0.29688427812965,0,0,0.922461989024234,0.150722640552623,0.823120949949934,0,0,0.86759614151947,0,0.485300549842228,0,0,0,0.585561594023094,0,0,0,0,0,2.54644086988199,0.915001205637253,0.376963056338593,1.04294592115366,1.53429274398198,2.49345653471472,1.62241263067758,0.407357455401265,0,0,0.210441855886474,0.130120442962704,0,0,0.90422890701429,0.204109497453984,0.12811372028485,0.281105173679186,0.776110112217047,0,0,0.527853372491847,0.43839146485515,0.556094498451196,0.696504333044333,0.411564272815887,0,0,0,0,0,0,0,0,0.196764231747404,0,0.232533944750408,0,0,0.493679549740441,0.820837320395476,0.243206428637567,0.146199987425332,0,0,0.630869845692382,0.308713837137853,0,0,0.426576501070468,0,0.128867461322093,0,0,0.380451252225118,0.474529061544512,0.164698954724011,0.251335208800269,0,0,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339490171550376,0,0,0.238043640886014,0.195133647857799,0.157635144106191,0,0.318909537314974,0,0,0.144649058581512,0,0,0,0,1.44495530989013,3.16471553798949,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.283880170416537,0.712262414669021,0.488660878060728,0.659880491890142,0,0,0.604647113929502,0.188605079755898,1.18120757152309,0.307435147943927,0.258428293168221,0.363533729477506,0.356497378384721,0,0,0,0.340439605753788,0.36012218806262,0.258717367565509,0.214337035031592,0,0,0.822745103010605,0.304464949114599,0,0.21183207086382,0,0.16488625294148,0.968786560175433,0.361877549568935,0.477489376012546,0.328281799490123,0,3.15223013417866,0.170870880797853,0,0.370389054739423,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0,0.627264888043406,0.436725127492355,0.134864346384821,0.0826534557253359,0,0.129614973291793,0,0,0,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0,0.314578033277133,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0.147689527174577,0.100966449948148,0,0.201652370273681,0,0,0,0,0,0,0,1.54551675225752,3.37828455812128,0.915758121336325,1.07184189539533,0,0,0,0,0.68741272937475,0,0,0.675022500231806,0.45032120322422,1.35942722695261,0,0.207574695168353,0,0.170733605754134,0,0,0,0.666740183404846,0.206035057238894,0.64183841918363,0,0.25347929989024,0.188626341386076,0.280924522409647,0.576226371643824,0.402048282689293,0,0.579421629724277,0.192909220463705,0.412085900803307,0.294397840268795,0.685738504770831,0.177475806159338,0.715308569841963,0.581385666529314,0.376437521661322,0.25384382367503,0.182927972872773,0.263069711437843,0.135804113845862,0,0.355905054372522,0.197008964751127,0.409231043169689,0.929621047115796,0,0.999242311751784,0.233931608445408,0,0.191288332068843,0.441182838239031,0.695603506861264|short_description=p3@Galntl1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:108760 | |||
|HGNC= | |||
|MCL_coexpression_id=283 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=86bp_to_uc007oaw.1_5end | |||
|cluster_id=chr12:81619544..81619562,+ | |||
|description=CAGE_peak_3_at_Galntl1_5end | |||
|id=chr12:81619544..81619562,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.87e-15,43;CL:0000221,1.28e-14,44;CL:0000133,1.28e-14,44;CL:0002453,5.22e-14,8;CL:0000128,4.19e-13,6;CL:0000126,4.19e-13,6;CL:0000127,4.19e-13,6;CL:0000117,2.67e-11,23;CL:0000337,2.67e-11,23;CL:0000333,4.50e-11,10;CL:0000095,4.50e-11,10;CL:0000243,4.50e-11,10;CL:0000123,4.50e-11,10;CL:0000125,4.50e-11,10;CL:0000030,4.50e-11,10;CL:0000339,4.50e-11,10;CL:0002610,1.83e-10,3;CL:0002614,2.22e-09,3;CL:0002321,4.04e-09,70;CL:0002605,2.21e-07,2;CL:0002604,2.21e-07,2;CL:0000540,2.46e-07,33;CL:0000047,2.46e-07,33;CL:0000031,2.46e-07,33;CL:0000404,2.46e-07,33;CL:0000393,3.17e-07,39;CL:0000211,3.17e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.50e-11!102;UBERON:0000924!2.50e-11!102;UBERON:0006601!2.50e-11!102;UBERON:0001017!7.95e-11!73;UBERON:0005743!7.95e-11!73;UBERON:0000073!1.75e-10!75;UBERON:0001016!1.75e-10!75;UBERON:0001049!5.17e-09!52;UBERON:0005068!5.17e-09!52;UBERON:0006241!5.17e-09!52;UBERON:0007135!5.17e-09!52;UBERON:0002346!1.88e-08!71;UBERON:0003075!1.88e-08!71;UBERON:0007284!1.88e-08!71;UBERON:0000033!3.04e-08!63;UBERON:0000955!4.38e-08!50;UBERON:0006238!4.38e-08!50;UBERON:0002616!7.53e-08!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.30e-19,73;UBERON:0001016,5.83e-19,75;UBERON:0000073,1.14e-14,54;UBERON:0004121,6.02e-14,95;UBERON:0000924,6.02e-14,95;UBERON:0006601,6.02e-14,95;UBERON:0002950,2.89e-12,4;UBERON:0001891,2.89e-12,4;UBERON:0009616,2.89e-12,4;UBERON:0010286,2.89e-12,4;UBERON:0001049,1.16e-11,52;UBERON:0005068,1.16e-11,52;UBERON:0006241,1.16e-11,52;UBERON:0007135,1.16e-11,52;UBERON:0004684,1.83e-10,3;UBERON:0002275,1.83e-10,3;UBERON:0002038,2.22e-09,3;UBERON:0009663,2.22e-09,3;UBERON:0009661,2.22e-09,3;UBERON:0000125,2.22e-09,3;UBERON:0002308,2.22e-09,3;UBERON:0002346,7.47e-09,64;UBERON:0003075,7.47e-09,64;UBERON:0007284,7.47e-09,64;UBERON:0003076,8.47e-09,12;UBERON:0003057,8.47e-09,12;UBERON:0002616,1.31e-08,46;UBERON:0000955,2.26e-08,47;UBERON:0006238,2.26e-08,47;UBERON:0010371,2.33e-07,73;UBERON:0001896,3.62e-07,2;UBERON:0002298,3.62e-07,2;UBERON:0005290,3.62e-07,2;UBERON:0010096,3.62e-07,2 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.183546752161682,0,3.92445281484804,3.07560655828261,2.3331587888914,2.37976916763116,1.43752564364972,0,0,0,0.257259436035947,1.43266719969378,0.515672092277442,0.606949382578793,1.05798195854407,1.90149421051854,0,0,0,0,0,0.599200221036809,4.2264013585371,0,0,0,0.856952953211411,1.54607978666129,0,0.0958454710182364,0,4.40463523997555,2.042997409363,2.91852413186863,0.131886287730194,0.182975287204819,0.52091337055676,1.67509799400829,1.12552522006336,1.68078072554491,1.17851434189467,0.854230084794618,0.559198337475902,0.151452386666368,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0.258937883647172,0.29688427812965,0,0,0.922461989024234,0.150722640552623,0.823120949949934,0,0,0.86759614151947,0,0.485300549842228,0,0,0,0.585561594023094,0,0,0,0,0,2.54644086988199,0.915001205637253,0.376963056338593,1.04294592115366,1.53429274398198,2.49345653471472,1.62241263067758,0.407357455401265,0,0,0.210441855886474,0.130120442962704,0,0,0.90422890701429,0.204109497453984,0.12811372028485,0.281105173679186,0.776110112217047,0,0,0.527853372491847,0.43839146485515,0.556094498451196,0.696504333044333,0.411564272815887,0,0,0,0,0,0,0,0,0.196764231747404,0,0.232533944750408,0,0,0.493679549740441,0.820837320395476,0.243206428637567,0.146199987425332,0,0,0.630869845692382,0.308713837137853,0,0,0.426576501070468,0,0.128867461322093,0,0,0.380451252225118,0.474529061544512,0.164698954724011,0.251335208800269,0,0,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339490171550376,0,0,0.238043640886014,0.195133647857799,0.157635144106191,0,0.318909537314974,0,0,0.144649058581512,0,0,0,0,1.44495530989013,3.16471553798949,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.283880170416537,0.712262414669021,0.488660878060728,0.659880491890142,0,0,0.604647113929502,0.188605079755898,1.18120757152309,0.307435147943927,0.258428293168221,0.363533729477506,0.356497378384721,0,0,0,0.340439605753788,0.36012218806262,0.258717367565509,0.214337035031592,0,0,0.822745103010605,0.304464949114599,0,0.21183207086382,0,0.16488625294148,0.968786560175433,0.361877549568935,0.477489376012546,0.328281799490123,0,3.15223013417866,0.170870880797853,0,0.370389054739423,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0,0.627264888043406,0.436725127492355,0.134864346384821,0.0826534557253359,0,0.129614973291793,0,0,0,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0,0.314578033277133,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0.147689527174577,0.100966449948148,0,0.201652370273681,0,0,0,0,0,0,0,1.54551675225752,3.37828455812128,0.915758121336325,1.07184189539533,0,0,0,0,0.68741272937475,0,0,0.675022500231806,0.45032120322422,1.35942722695261,0,0.207574695168353,0,0.170733605754134,0,0,0,0.666740183404846,0.206035057238894,0.64183841918363,0,0.25347929989024,0.188626341386076,0.280924522409647,0.576226371643824,0.402048282689293,0,0.579421629724277,0.192909220463705,0.412085900803307,0.294397840268795,0.685738504770831,0.177475806159338,0.715308569841963,0.581385666529314,0.376437521661322,0.25384382367503,0.182927972872773,0.263069711437843,0.135804113845862,0,0.355905054372522,0.197008964751127,0.409231043169689,0.929621047115796,0,0.999242311751784,0.233931608445408,0,0.191288332068843,0.441182838239031,0.695603506861264 | |||
|short_description=p3@Galntl1 | |||
}} |
Revision as of 08:04, 5 August 2015
Short description: | p3@Galntl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Galntl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:283 |
Association with transcript: | 86bp_to_uc007oaw.1_5end |
EntrezGene: | 108760 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.87e-15 | 43 |
ectodermal cell | 1.28e-14 | 44 |
neurectodermal cell | 1.28e-14 | 44 |
oligodendrocyte precursor cell | 5.22e-14 | 8 |
oligodendrocyte | 4.19e-13 | 6 |
macroglial cell | 4.19e-13 | 6 |
astrocyte | 4.19e-13 | 6 |
CNS neuron (sensu Vertebrata) | 2.67e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.67e-11 | 23 |
migratory neural crest cell | 4.50e-11 | 10 |
neuron associated cell | 4.50e-11 | 10 |
glial cell (sensu Vertebrata) | 4.50e-11 | 10 |
neuron associated cell (sensu Vertebrata) | 4.50e-11 | 10 |
glial cell | 4.50e-11 | 10 |
glioblast | 4.50e-11 | 10 |
glioblast (sensu Vertebrata) | 4.50e-11 | 10 |
raphe nuclei neuron | 1.83e-10 | 3 |
neuron of the substantia nigra | 2.22e-09 | 3 |
embryonic cell | 4.04e-09 | 70 |
astrocyte of the cerebral cortex | 2.21e-07 | 2 |
astrocyte of the hippocampus | 2.21e-07 | 2 |
neuron | 2.46e-07 | 33 |
neuronal stem cell | 2.46e-07 | 33 |
neuroblast | 2.46e-07 | 33 |
electrically signaling cell | 2.46e-07 | 33 |
electrically responsive cell | 3.17e-07 | 39 |
electrically active cell | 3.17e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.30e-19 | 73 |
nervous system | 5.83e-19 | 75 |
regional part of nervous system | 1.14e-14 | 54 |
ectoderm-derived structure | 6.02e-14 | 95 |
ectoderm | 6.02e-14 | 95 |
presumptive ectoderm | 6.02e-14 | 95 |
regional part of midbrain | 2.89e-12 | 4 |
midbrain | 2.89e-12 | 4 |
presumptive midbrain | 2.89e-12 | 4 |
midbrain neural tube | 2.89e-12 | 4 |
neural tube | 1.16e-11 | 52 |
neural rod | 1.16e-11 | 52 |
future spinal cord | 1.16e-11 | 52 |
neural keel | 1.16e-11 | 52 |
raphe nuclei | 1.83e-10 | 3 |
reticular formation | 1.83e-10 | 3 |
substantia nigra | 2.22e-09 | 3 |
telencephalic nucleus | 2.22e-09 | 3 |
midbrain nucleus | 2.22e-09 | 3 |
neural nucleus | 2.22e-09 | 3 |
nucleus of brain | 2.22e-09 | 3 |
neurectoderm | 7.47e-09 | 64 |
neural plate | 7.47e-09 | 64 |
presumptive neural plate | 7.47e-09 | 64 |
posterior neural tube | 8.47e-09 | 12 |
chordal neural plate | 8.47e-09 | 12 |
regional part of brain | 1.31e-08 | 46 |
brain | 2.26e-08 | 47 |
future brain | 2.26e-08 | 47 |
ecto-epithelium | 2.33e-07 | 73 |
medulla oblongata | 3.62e-07 | 2 |
brainstem | 3.62e-07 | 2 |
myelencephalon | 3.62e-07 | 2 |
future myelencephalon | 3.62e-07 | 2 |