FFCP PHASE1:Mm9::chr9:44946874..44946881,+: Difference between revisions
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{{FFCP|EntrezGene=399548|HGNC=|MCL_coexpression_id=955|UniProt=Q1MXF9,Q7M729|association_with_transcript=-243bp_to_NM_001013390,uc009pfh.1_5end|description=CAGE_peak_18_at_Scn4b_5end|id=chr9:44946874..44946881,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002298!1.06e-11!6;UBERON:0005418!6.58e-10!5;UBERON:0002472!6.58e-10!5;UBERON:0008784!6.58e-10!5;UBERON:0006058!6.58e-10!5;UBERON:0004709!6.58e-10!5;UBERON:0005420!6.58e-10!5;UBERON:0006057!6.58e-10!5;UBERON:0000978!6.58e-10!5;UBERON:0002103!6.58e-10!5;UBERON:0000376!6.58e-10!5;UBERON:0000154!6.58e-10!5;UBERON:0005730!6.58e-10!5;UBERON:0002529!3.69e-08!6;UBERON:0000981!4.44e-08!4;UBERON:0002495!4.44e-08!4;UBERON:0003608!4.44e-08!4;UBERON:0003826!4.44e-08!4;UBERON:0008202!4.44e-08!4;UBERON:0004375!4.44e-08!4;UBERON:0002428!4.44e-08!4;UBERON:0003464!4.44e-08!4;UBERON:0003606!4.44e-08!4;UBERON:0009749!4.44e-08!4;UBERON:0003860!4.44e-08!4;UBERON:0005856!4.44e-08!4;UBERON:0005866!4.44e-08!4;UBERON:0007828!4.44e-08!4;UBERON:0005254!4.44e-08!4;UBERON:0001271!4.44e-08!4;UBERON:0002091!4.44e-08!4;UBERON:0001464!4.44e-08!4;UBERON:0003285!4.44e-08!4;UBERON:0010129!4.44e-08!4;UBERON:0006234!4.44e-08!4;UBERON:0002616!5.14e-08!49;UBERON:0002950!5.23e-08!4;UBERON:0001891!5.23e-08!4;UBERON:0009616!5.23e-08!4;UBERON:0000955!9.14e-08!50;UBERON:0006238!9.14e-08!50;UBERON:0000075!1.27e-07!6;UBERON:0001049!2.82e-07!52;UBERON:0005068!2.82e-07!52;UBERON:0006241!2.82e-07!52;UBERON:0007135!2.82e-07!52;UBERON:0000033!6.23e-07!63;UBERON:0007811!7.45e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.57e-15,2;UBERON:0002298,5.57e-15,2;UBERON:0005290,5.57e-15,2;UBERON:0010096,5.57e-15,2;UBERON:0001723,2.16e-08,1;UBERON:0001033,2.16e-08,1;UBERON:0010056,2.16e-08,1;UBERON:0001374,2.98e-08,1;UBERON:0004252,2.98e-08,1;UBERON:0003663,2.98e-08,1;UBERON:0005090,2.98e-08,1;UBERON:0001630,2.98e-08,1;UBERON:0003661,2.98e-08,1;UBERON:0010890,2.98e-08,1;UBERON:0001383,2.98e-08,1;UBERON:0002259,6.57e-08,1;UBERON:0002314,6.57e-08,1;UBERON:0004061,6.57e-08,1;UBERON:0006777,6.57e-08,1;UBERON:0005882,6.57e-08,1;UBERON:0001049,1.21e-07,52;UBERON:0005068,1.21e-07,52;UBERON:0006241,1.21e-07,52;UBERON:0007135,1.21e-07,52;UBERON:0002950,1.80e-07,4;UBERON:0001891,1.80e-07,4;UBERON:0009616,1.80e-07,4;UBERON:0010286,1.80e-07,4;UBERON:0000073,3.07e-07,54|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14918604276669,0.921639199537461,0,0,0,1.11673199600552,0.56276261003168,0.30559649555362,0.294628585473668,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0.884610551949874,0.323533699894818,0.883366073841574,1.45462575940567,0,0.292780797011547,0.209446706813455,0,0,0,0,1.19832511523858,1.37250180845588,0,0.173824320192276,0,0.20778804455956,0.486723789203273,0,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69266356971921,1.75817529888305,0,2.01976741763498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,2.06271086496374,0,0.18006109403131,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0,0,3.8939313422207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576060012515731,0.316011120628178,0,0.102710957164827,0.129920822977795,0,0,0,0,0,0,0,0.0974578807397524,0.0962118416403295,0,2.72076460338254,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,1.5107877947794,0,0,0,1.03552062350364,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0,0.0936415074698824,0,0.114870937911227,0,0,0,0,0,0.342869252385415,0,0,0,0,0,0,0.263069711437843,0,0,0,0,0,0.154936841185966,0,0,0,0,0.191288332068843,0.441182838239031,0.927471342481686|short_description=p18@Scn4b}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:399548 | |||
|HGNC= | |||
|MCL_coexpression_id=955 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q1MXF9,uniprot:Q7M729 | |||
|association_with_transcript=-243bp_to_NM_001013390,uc009pfh.1_5end | |||
|cluster_id=chr9:44946874..44946881,+ | |||
|description=CAGE_peak_18_at_Scn4b_5end | |||
|id=chr9:44946874..44946881,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!1.06e-11!6;UBERON:0005418!6.58e-10!5;UBERON:0002472!6.58e-10!5;UBERON:0008784!6.58e-10!5;UBERON:0006058!6.58e-10!5;UBERON:0004709!6.58e-10!5;UBERON:0005420!6.58e-10!5;UBERON:0006057!6.58e-10!5;UBERON:0000978!6.58e-10!5;UBERON:0002103!6.58e-10!5;UBERON:0000376!6.58e-10!5;UBERON:0000154!6.58e-10!5;UBERON:0005730!6.58e-10!5;UBERON:0002529!3.69e-08!6;UBERON:0000981!4.44e-08!4;UBERON:0002495!4.44e-08!4;UBERON:0003608!4.44e-08!4;UBERON:0003826!4.44e-08!4;UBERON:0008202!4.44e-08!4;UBERON:0004375!4.44e-08!4;UBERON:0002428!4.44e-08!4;UBERON:0003464!4.44e-08!4;UBERON:0003606!4.44e-08!4;UBERON:0009749!4.44e-08!4;UBERON:0003860!4.44e-08!4;UBERON:0005856!4.44e-08!4;UBERON:0005866!4.44e-08!4;UBERON:0007828!4.44e-08!4;UBERON:0005254!4.44e-08!4;UBERON:0001271!4.44e-08!4;UBERON:0002091!4.44e-08!4;UBERON:0001464!4.44e-08!4;UBERON:0003285!4.44e-08!4;UBERON:0010129!4.44e-08!4;UBERON:0006234!4.44e-08!4;UBERON:0002616!5.14e-08!49;UBERON:0002950!5.23e-08!4;UBERON:0001891!5.23e-08!4;UBERON:0009616!5.23e-08!4;UBERON:0000955!9.14e-08!50;UBERON:0006238!9.14e-08!50;UBERON:0000075!1.27e-07!6;UBERON:0001049!2.82e-07!52;UBERON:0005068!2.82e-07!52;UBERON:0006241!2.82e-07!52;UBERON:0007135!2.82e-07!52;UBERON:0000033!6.23e-07!63;UBERON:0007811!7.45e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.57e-15,2;UBERON:0002298,5.57e-15,2;UBERON:0005290,5.57e-15,2;UBERON:0010096,5.57e-15,2;UBERON:0001723,2.16e-08,1;UBERON:0001033,2.16e-08,1;UBERON:0010056,2.16e-08,1;UBERON:0001374,2.98e-08,1;UBERON:0004252,2.98e-08,1;UBERON:0003663,2.98e-08,1;UBERON:0005090,2.98e-08,1;UBERON:0001630,2.98e-08,1;UBERON:0003661,2.98e-08,1;UBERON:0010890,2.98e-08,1;UBERON:0001383,2.98e-08,1;UBERON:0002259,6.57e-08,1;UBERON:0002314,6.57e-08,1;UBERON:0004061,6.57e-08,1;UBERON:0006777,6.57e-08,1;UBERON:0005882,6.57e-08,1;UBERON:0001049,1.21e-07,52;UBERON:0005068,1.21e-07,52;UBERON:0006241,1.21e-07,52;UBERON:0007135,1.21e-07,52;UBERON:0002950,1.80e-07,4;UBERON:0001891,1.80e-07,4;UBERON:0009616,1.80e-07,4;UBERON:0010286,1.80e-07,4;UBERON:0000073,3.07e-07,54 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14918604276669,0.921639199537461,0,0,0,1.11673199600552,0.56276261003168,0.30559649555362,0.294628585473668,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0.884610551949874,0.323533699894818,0.883366073841574,1.45462575940567,0,0.292780797011547,0.209446706813455,0,0,0,0,1.19832511523858,1.37250180845588,0,0.173824320192276,0,0.20778804455956,0.486723789203273,0,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69266356971921,1.75817529888305,0,2.01976741763498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,2.06271086496374,0,0.18006109403131,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0,0,3.8939313422207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576060012515731,0.316011120628178,0,0.102710957164827,0.129920822977795,0,0,0,0,0,0,0,0.0974578807397524,0.0962118416403295,0,2.72076460338254,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,1.5107877947794,0,0,0,1.03552062350364,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0,0.0936415074698824,0,0.114870937911227,0,0,0,0,0,0.342869252385415,0,0,0,0,0,0,0.263069711437843,0,0,0,0,0,0.154936841185966,0,0,0,0,0.191288332068843,0.441182838239031,0.927471342481686 | |||
|short_description=p18@Scn4b | |||
}} |
Revision as of 04:45, 5 August 2015
Short description: | p18@Scn4b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_18_at_Scn4b_5end |
Coexpression cluster: | MCL_coexpression_mm9:955 |
Association with transcript: | -243bp_to_NM_001013390, uc009pfh.1_5end |
EntrezGene: | 399548 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 5.57e-15 | 2 |
brainstem | 5.57e-15 | 2 |
myelencephalon | 5.57e-15 | 2 |
future myelencephalon | 5.57e-15 | 2 |
tongue | 2.16e-08 | 1 |
gustatory system | 2.16e-08 | 1 |
future tongue | 2.16e-08 | 1 |
biceps femoris | 2.98e-08 | 1 |
hindlimb stylopod muscle | 2.98e-08 | 1 |
hindlimb muscle | 2.98e-08 | 1 |
muscle structure | 2.98e-08 | 1 |
muscle organ | 2.98e-08 | 1 |
limb muscle | 2.98e-08 | 1 |
pelvic complex muscle | 2.98e-08 | 1 |
muscle of leg | 2.98e-08 | 1 |
corpora quadrigemina | 6.57e-08 | 1 |
midbrain tectum | 6.57e-08 | 1 |
neural tube mantle layer | 6.57e-08 | 1 |
tectal plate | 6.57e-08 | 1 |
neural tube alar plate | 6.57e-08 | 1 |
neural tube | 1.21e-07 | 52 |
neural rod | 1.21e-07 | 52 |
future spinal cord | 1.21e-07 | 52 |
neural keel | 1.21e-07 | 52 |
regional part of midbrain | 1.80e-07 | 4 |
midbrain | 1.80e-07 | 4 |
presumptive midbrain | 1.80e-07 | 4 |
midbrain neural tube | 1.80e-07 | 4 |
regional part of nervous system | 3.07e-07 | 54 |