FFCP PHASE1:Mm9::chr12:17999645..17999656,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2775 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-15bp_to_uc007nda.1_5end | |association_with_transcript=-15bp_to_uc007nda.1_5end | ||
|cluster_id=chr12:17999645..17999656,+ | |||
|description=CAGE_peak_2_at_uc007nda.1_5end | |description=CAGE_peak_2_at_uc007nda.1_5end | ||
|id=chr12:17999645..17999656,+ | |id=chr12:17999645..17999656,+ | ||
|ontology_enrichment_celltype=CL:0000540!4.53e-21!33;CL:0000047!4.53e-21!33;CL:0000031!4.53e-21!33;CL:0000404!4.53e-21!33;CL:0000221!8.64e-17!44;CL:0000133!8.64e-17!44;CL:0000393!2.34e-16!39;CL:0000211!2.34e-16!39;CL:0002319!2.49e-16!43;CL:0000117!3.21e-16!23;CL:0000337!3.21e-16!23;CL:0000055!1.73e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.48e-39,33;CL:0000047,3.48e-39,33;CL:0000031,3.48e-39,33;CL:0000404,3.48e-39,33;CL:0000117,2.36e-36,23;CL:0000337,2.36e-36,23;CL:0000393,6.71e-32,39;CL:0000211,6.71e-32,39;CL:0002319,1.80e-30,43;CL:0000221,1.37e-29,44;CL:0000133,1.37e-29,44;CL:0002321,7.93e-17,70;CL:0002609,1.00e-11,6;CL:0000723,3.83e-10,91;CL:0000048,3.83e-10,91;CL:0000034,4.78e-09,97;CL:0002613,6.19e-07,3;CL:0002612,6.75e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.65e-08!75;UBERON:0001016!5.65e-08!75;UBERON:0001017!6.24e-08!73;UBERON:0005743!6.24e-08!73;UBERON:0004121!6.62e-07!102;UBERON:0000924!6.62e-07!102;UBERON:0006601!6.62e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.86e-17,73;UBERON:0001016,2.79e-16,75;UBERON:0004121,4.78e-15,95;UBERON:0000924,4.78e-15,95;UBERON:0006601,4.78e-15,95;UBERON:0002346,1.02e-12,64;UBERON:0003075,1.02e-12,64;UBERON:0007284,1.02e-12,64;UBERON:0002020,1.54e-12,34;UBERON:0000073,1.89e-11,54;UBERON:0010371,2.64e-10,73;UBERON:0001948,4.77e-10,5;UBERON:0002315,4.77e-10,5;UBERON:0001049,1.56e-08,52;UBERON:0005068,1.56e-08,52;UBERON:0006241,1.56e-08,52;UBERON:0007135,1.56e-08,52;UBERON:0002240,2.87e-08,6;UBERON:0005174,2.87e-08,6;UBERON:0001137,2.87e-08,6;UBERON:0000489,1.01e-07,21;UBERON:0003528,5.47e-07,29;UBERON:0002791,5.47e-07,29;UBERON:0001893,5.47e-07,29;UBERON:0002257,6.75e-07,3;UBERON:0010314,7.89e-07,92 | |||
|phase1_expression=0.960893082628764,0,0,0,0,1.17515490338323,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0.159992422793407,0.22940928106717,0,0.86152399231815,0.215471232685889,0,0.252030129759931,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0.436050312760893,0,0,0,0,0,0,0,0.257259436035947,0.286533439938757,0,3.23706337375356,1.05798195854407,3.1691570175309,0.338844532069132,0,0,0,0,0.599200221036809,0,2.07379224616955,3.37514845829227,2.52389953621658,4.57041575046086,1.32521124570968,2.44981598429908,2.97120960156533,2.75765635983006,2.20231761998777,1.65993539510744,1.22885226604995,3.69281605644543,3.47653045689157,2.6045668527838,0.279182999001381,2.25105044012672,1.5279824777681,2.65165726926301,3.70166370077668,2.98239113320481,0.075726193333184,0.453429360640713,0.869593466105033,0,0,0,0,0,0,0,0,0,0.985903938436763,0,0,0,0,0,0,0,0,0,0.520455980298408,0,0,0,0.117588707135705,0,0.247194967734374,0,0,0,0,0.484875253135222,0,0,0,0,0,0,0,0,0,0.502617408451458,0,0,0.20778804455956,0.162241263067758,0.81471491080253,0.124406970610093,0.758168275301024,0,1.43132487258974,1.14951052216736,0.180062129805349,1.05493372485001,0.884474488967262,0.768682321709099,1.03071897015702,0.258703370739016,0.862271971731369,1.89106080167819,0.879755620819744,0.657587197282725,0.834141747676794,0.696504333044333,0.411564272815887,1.39323986772945,0,0,0,0.828503090142008,0.938104239924385,0.720248245844059,0.710234206755631,0.983821158737019,0.462801338662135,0.465067889500816,0.536546802799238,0.467061369468678,0,0,0.162137619091711,0.146199987425332,0,0.268412837520744,0,1.13195073617213,0,0,1.49301775374664,1.39342003116263,0.902072229254653,0.605050573870028,0.22237804384487,0.190225626112559,0,0,0,0.397912944082302,0,0,0.216138049874694,0,1.51734320762465,1.14248512609729,1.1270773567308,1.01825663922657,0.387904974335251,1.05203729835478,0.379419222745544,0,0.470996183524124,0,0,0.333690211432188,0,0,0,0.241177159752417,0,0,0,0,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0,0,1.89491411770485,0.814824882210129,1.01847051465113,0.938760993154008,0,0,0.195133647857799,0.315270288212382,0.44292937929755,0.478364305972461,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0.703270119553219,0,0,1.26203287766503,1.17131623288992,1.93881057959519,0.955875191810208,2.00518806674155,1.69845918473299,0.404810701674894,0.876767573733936,1.58115111178609,0,0,0.35613120733451,1.14020871547503,0.164970122972535,0,0.728341908464944,0.604647113929502,0.377210159511796,0.590603785761546,0.922305443831782,0.516856586336442,0.363533729477506,0.356497378384721,0,0,0,0,0.720244376125241,0.258717367565509,0.214337035031592,0,1.07021290561242,0.987294123612726,0.913394847343798,0,0.847328283455281,0,0,0.322928853391811,0.241251699712623,0.238744688006273,0.164140899745061,0,0.741701208042039,0,0.619160603889667,0.925972636848558,0,0,0,0,0,0,0,1.58167996790568,0.609958401380546,0.972048067396211,0.418176592028937,0,0.269728692769641,0.578574190077352,0,0.129614973291793,0,0,1.19613236835183,0.165458490457098,0.583353565032143,0.774958940866387,0.506868376472335,0.352071715937262,0.2604087696879,0.419437377702843,0,0,0,1.21635129174099,0.513554785824136,0.25984164595559,0.179026695667481,0.39736270956253,0.120195449519969,0.147689527174577,0,0,0,0,0,0,0,0.665957860122194,0.179427713218951,0.503653849092235,1.35232715822533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14166082342594,0.399024873401031,0.341467211508268,0.729320151204882,0.838452650511929,0,0.44449345560323,0.412070114477788,0.320919209591815,0,0,0.943131706930381,0.280924522409647,0.320125762024346,0.574354689556133,0.476293691283074,0.695305955669133,0.578727661391115,0,0.441596760403192,1.02860775715625,0.354951612318675,0.238436189947321,0.436039249896986,0.564656282491984,0.25384382367503,0.182927972872773,0.263069711437843,0.814824683075171,0,0.355905054372522,0.197008964751127,0.409231043169689,0.154936841185966,0,0.749431733813838,0.233931608445408,0.214871054048298,0,0,0.463735671240843 | |phase1_expression=0.960893082628764,0,0,0,0,1.17515490338323,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0.159992422793407,0.22940928106717,0,0.86152399231815,0.215471232685889,0,0.252030129759931,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0.436050312760893,0,0,0,0,0,0,0,0.257259436035947,0.286533439938757,0,3.23706337375356,1.05798195854407,3.1691570175309,0.338844532069132,0,0,0,0,0.599200221036809,0,2.07379224616955,3.37514845829227,2.52389953621658,4.57041575046086,1.32521124570968,2.44981598429908,2.97120960156533,2.75765635983006,2.20231761998777,1.65993539510744,1.22885226604995,3.69281605644543,3.47653045689157,2.6045668527838,0.279182999001381,2.25105044012672,1.5279824777681,2.65165726926301,3.70166370077668,2.98239113320481,0.075726193333184,0.453429360640713,0.869593466105033,0,0,0,0,0,0,0,0,0,0.985903938436763,0,0,0,0,0,0,0,0,0,0.520455980298408,0,0,0,0.117588707135705,0,0.247194967734374,0,0,0,0,0.484875253135222,0,0,0,0,0,0,0,0,0,0.502617408451458,0,0,0.20778804455956,0.162241263067758,0.81471491080253,0.124406970610093,0.758168275301024,0,1.43132487258974,1.14951052216736,0.180062129805349,1.05493372485001,0.884474488967262,0.768682321709099,1.03071897015702,0.258703370739016,0.862271971731369,1.89106080167819,0.879755620819744,0.657587197282725,0.834141747676794,0.696504333044333,0.411564272815887,1.39323986772945,0,0,0,0.828503090142008,0.938104239924385,0.720248245844059,0.710234206755631,0.983821158737019,0.462801338662135,0.465067889500816,0.536546802799238,0.467061369468678,0,0,0.162137619091711,0.146199987425332,0,0.268412837520744,0,1.13195073617213,0,0,1.49301775374664,1.39342003116263,0.902072229254653,0.605050573870028,0.22237804384487,0.190225626112559,0,0,0,0.397912944082302,0,0,0.216138049874694,0,1.51734320762465,1.14248512609729,1.1270773567308,1.01825663922657,0.387904974335251,1.05203729835478,0.379419222745544,0,0.470996183524124,0,0,0.333690211432188,0,0,0,0.241177159752417,0,0,0,0,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0,0,1.89491411770485,0.814824882210129,1.01847051465113,0.938760993154008,0,0,0.195133647857799,0.315270288212382,0.44292937929755,0.478364305972461,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0.703270119553219,0,0,1.26203287766503,1.17131623288992,1.93881057959519,0.955875191810208,2.00518806674155,1.69845918473299,0.404810701674894,0.876767573733936,1.58115111178609,0,0,0.35613120733451,1.14020871547503,0.164970122972535,0,0.728341908464944,0.604647113929502,0.377210159511796,0.590603785761546,0.922305443831782,0.516856586336442,0.363533729477506,0.356497378384721,0,0,0,0,0.720244376125241,0.258717367565509,0.214337035031592,0,1.07021290561242,0.987294123612726,0.913394847343798,0,0.847328283455281,0,0,0.322928853391811,0.241251699712623,0.238744688006273,0.164140899745061,0,0.741701208042039,0,0.619160603889667,0.925972636848558,0,0,0,0,0,0,0,1.58167996790568,0.609958401380546,0.972048067396211,0.418176592028937,0,0.269728692769641,0.578574190077352,0,0.129614973291793,0,0,1.19613236835183,0.165458490457098,0.583353565032143,0.774958940866387,0.506868376472335,0.352071715937262,0.2604087696879,0.419437377702843,0,0,0,1.21635129174099,0.513554785824136,0.25984164595559,0.179026695667481,0.39736270956253,0.120195449519969,0.147689527174577,0,0,0,0,0,0,0,0.665957860122194,0.179427713218951,0.503653849092235,1.35232715822533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14166082342594,0.399024873401031,0.341467211508268,0.729320151204882,0.838452650511929,0,0.44449345560323,0.412070114477788,0.320919209591815,0,0,0.943131706930381,0.280924522409647,0.320125762024346,0.574354689556133,0.476293691283074,0.695305955669133,0.578727661391115,0,0.441596760403192,1.02860775715625,0.354951612318675,0.238436189947321,0.436039249896986,0.564656282491984,0.25384382367503,0.182927972872773,0.263069711437843,0.814824683075171,0,0.355905054372522,0.197008964751127,0.409231043169689,0.154936841185966,0,0.749431733813838,0.233931608445408,0.214871054048298,0,0,0.463735671240843 | ||
|short_description=p2@uc007nda.1 | |short_description=p2@uc007nda.1 | ||
}} | }} |
Latest revision as of 21:40, 4 August 2015
Short description: | p2@uc007nda.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_uc007nda.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2775 |
Association with transcript: | -15bp_to_uc007nda.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.48e-39 | 33 |
neuronal stem cell | 3.48e-39 | 33 |
neuroblast | 3.48e-39 | 33 |
electrically signaling cell | 3.48e-39 | 33 |
CNS neuron (sensu Vertebrata) | 2.36e-36 | 23 |
neuroblast (sensu Vertebrata) | 2.36e-36 | 23 |
electrically responsive cell | 6.71e-32 | 39 |
electrically active cell | 6.71e-32 | 39 |
neural cell | 1.80e-30 | 43 |
ectodermal cell | 1.37e-29 | 44 |
neurectodermal cell | 1.37e-29 | 44 |
embryonic cell | 7.93e-17 | 70 |
neuron of cerebral cortex | 1.00e-11 | 6 |
somatic stem cell | 3.83e-10 | 91 |
multi fate stem cell | 3.83e-10 | 91 |
stem cell | 4.78e-09 | 97 |
striatum neuron | 6.19e-07 | 3 |
neuron of the ventral spinal cord | 6.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.86e-17 | 73 |
nervous system | 2.79e-16 | 75 |
ectoderm-derived structure | 4.78e-15 | 95 |
ectoderm | 4.78e-15 | 95 |
presumptive ectoderm | 4.78e-15 | 95 |
neurectoderm | 1.02e-12 | 64 |
neural plate | 1.02e-12 | 64 |
presumptive neural plate | 1.02e-12 | 64 |
gray matter | 1.54e-12 | 34 |
regional part of nervous system | 1.89e-11 | 54 |
ecto-epithelium | 2.64e-10 | 73 |
regional part of spinal cord | 4.77e-10 | 5 |
gray matter of spinal cord | 4.77e-10 | 5 |
neural tube | 1.56e-08 | 52 |
neural rod | 1.56e-08 | 52 |
future spinal cord | 1.56e-08 | 52 |
neural keel | 1.56e-08 | 52 |
spinal cord | 2.87e-08 | 6 |
dorsal region element | 2.87e-08 | 6 |
dorsum | 2.87e-08 | 6 |
cavitated compound organ | 1.01e-07 | 21 |
brain grey matter | 5.47e-07 | 29 |
regional part of telencephalon | 5.47e-07 | 29 |
telencephalon | 5.47e-07 | 29 |
ventral horn of spinal cord | 6.75e-07 | 3 |
structure with developmental contribution from neural crest | 7.89e-07 | 92 |