FFCP PHASE1:Mm9::chr2:180625404..180625417,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1538 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:180625404..180625417,+ | |||
|description=CAGE_peak_at_chr2:180625404..180625417,+ | |description=CAGE_peak_at_chr2:180625404..180625417,+ | ||
|id=chr2:180625404..180625417,+ | |id=chr2:180625404..180625417,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.59e-18!23;CL:0000337!1.59e-18!23;CL:0000540!1.47e-11!33;CL:0000047!1.47e-11!33;CL:0000031!1.47e-11!33;CL:0000404!1.47e-11!33;CL:0000393!4.00e-09!39;CL:0000211!4.00e-09!39;CL:0002319!4.02e-09!43;CL:0000221!8.18e-09!44;CL:0000133!8.18e-09!44;CL:0002609!5.93e-08!6;CL:0000055!3.11e-07!50;CL:0002612!4.65e-07!3;CL:0002608!5.31e-07!3;CL:0000120!8.94e-07!3 | |ontology_enrichment_celltype=CL:0000117!1.59e-18!23;CL:0000337!1.59e-18!23;CL:0000540!1.47e-11!33;CL:0000047!1.47e-11!33;CL:0000031!1.47e-11!33;CL:0000404!1.47e-11!33;CL:0000393!4.00e-09!39;CL:0000211!4.00e-09!39;CL:0002319!4.02e-09!43;CL:0000221!8.18e-09!44;CL:0000133!8.18e-09!44;CL:0002609!5.93e-08!6;CL:0000055!3.11e-07!50;CL:0002612!4.65e-07!3;CL:0002608!5.31e-07!3;CL:0000120!8.94e-07!3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002612,6.99e-27,3;CL:0000117,1.56e-18,23;CL:0000337,1.56e-18,23;CL:0002608,7.25e-13,3;CL:0000540,7.47e-13,33;CL:0000047,7.47e-13,33;CL:0000031,7.47e-13,33;CL:0000404,7.47e-13,33;CL:0000120,1.09e-12,3;CL:0000393,7.80e-11,39;CL:0000211,7.80e-11,39;CL:0002319,8.47e-10,43;CL:0000221,1.44e-09,44;CL:0000133,1.44e-09,44;CL:0002609,6.99e-07,6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.97e-23!52;UBERON:0005068!3.97e-23!52;UBERON:0006241!3.97e-23!52;UBERON:0007135!3.97e-23!52;UBERON:0002020!2.19e-22!34;UBERON:0001017!6.71e-22!73;UBERON:0005743!6.71e-22!73;UBERON:0000073!4.52e-21!75;UBERON:0001016!4.52e-21!75;UBERON:0002346!3.63e-17!71;UBERON:0003075!3.63e-17!71;UBERON:0007284!3.63e-17!71;UBERON:0000955!2.71e-15!50;UBERON:0006238!2.71e-15!50;UBERON:0003080!3.91e-15!40;UBERON:0004121!5.13e-15!102;UBERON:0000924!5.13e-15!102;UBERON:0006601!5.13e-15!102;UBERON:0002791!6.37e-15!29;UBERON:0003528!6.37e-15!29;UBERON:0001893!6.37e-15!29;UBERON:0002780!3.37e-14!39;UBERON:0001890!3.37e-14!39;UBERON:0006240!3.37e-14!39;UBERON:0002616!4.95e-14!49;UBERON:0003056!1.05e-13!49;UBERON:0000033!6.72e-13!63;UBERON:0000956!2.08e-12!21;UBERON:0001869!2.08e-12!21;UBERON:0000203!2.08e-12!21;UBERON:0002619!1.40e-11!17;UBERON:0002240!1.67e-11!6;UBERON:0005174!1.67e-11!6;UBERON:0001137!1.67e-11!6;UBERON:0001948!2.10e-10!5;UBERON:0002315!2.10e-10!5;UBERON:0003076!5.81e-09!12;UBERON:0003057!5.81e-09!12;UBERON:0007811!1.09e-07!86;UBERON:0002257!4.65e-07!3;UBERON:0001954!5.51e-07!7;UBERON:0003022!5.51e-07!7;UBERON:0002421!5.51e-07!7;UBERON:0000349!5.51e-07!7;UBERON:0002600!5.51e-07!7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002257,6.99e-27,3;UBERON:0001948,1.96e-16,5;UBERON:0002315,1.96e-16,5;UBERON:0002240,8.25e-14,6;UBERON:0005174,8.25e-14,6;UBERON:0001137,8.25e-14,6;UBERON:0002020,2.42e-12,34;UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0001049,5.79e-08,52;UBERON:0005068,5.79e-08,52;UBERON:0006241,5.79e-08,52;UBERON:0007135,5.79e-08,52;UBERON:0000073,1.18e-07,54;UBERON:0003076,3.34e-07,12;UBERON:0003057,3.34e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,0.528990979272033,2.53532561402472,0,0,0,0,0,0,0.768436610643109,0.311068836925433,0.405017814995072,0,0.856952953211411,0.883474163806454,2.44981598429908,2.01275489138296,0.919218786610021,0,0,0,0.923204014111357,0.457438218012048,0.52091337055676,0,0,0,1.76777151284201,1.42371680799103,2.23679334990361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.209446706813455,0,0,0,0,0.149790639404823,0,1.00523481690292,0,0.255715457330331,0.41557608911912,0.486723789203273,0,0,0,0,0,0,0,0,0.0680364991513279,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.720332286654991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53453448063988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,1.38097570952153,0,0.515559547031063,0,0,0.675022500231806,0.45032120322422,0.453142408984205,0,0.31136204275253,0.399024873401031,0.170733605754134,0,0,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0,0,0.280924522409647,0,0.17230640686684,0,0,0.578727661391115,0,0,0,0,0,0.436039249896986,0.188218760830661,0,0,0,0.271608227691724,0,0,0.0985044823755635,0,0,0,0.249810577937946,0.233931608445408,0,0,0.220591419119515,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,0.528990979272033,2.53532561402472,0,0,0,0,0,0,0.768436610643109,0.311068836925433,0.405017814995072,0,0.856952953211411,0.883474163806454,2.44981598429908,2.01275489138296,0.919218786610021,0,0,0,0.923204014111357,0.457438218012048,0.52091337055676,0,0,0,1.76777151284201,1.42371680799103,2.23679334990361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585561594023094,0.209446706813455,0,0,0,0,0.149790639404823,0,1.00523481690292,0,0.255715457330331,0.41557608911912,0.486723789203273,0,0,0,0,0,0,0,0,0.0680364991513279,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.720332286654991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53453448063988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,1.38097570952153,0,0.515559547031063,0,0,0.675022500231806,0.45032120322422,0.453142408984205,0,0.31136204275253,0.399024873401031,0.170733605754134,0,0,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0,0,0.280924522409647,0,0.17230640686684,0,0,0.578727661391115,0,0,0,0,0,0.436039249896986,0.188218760830661,0,0,0,0.271608227691724,0,0,0.0985044823755635,0,0,0,0.249810577937946,0.233931608445408,0,0,0.220591419119515,0 | ||
|short_description=p@chr2:180625404..180625417,+ | |short_description=p@chr2:180625404..180625417,+ | ||
}} | }} |
Latest revision as of 17:46, 4 August 2015
Short description: | p@chr2:180625404..180625417, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:180625404..180625417, + |
Coexpression cluster: | MCL_coexpression_mm9:1538 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 6.99e-27 | 3 |
CNS neuron (sensu Vertebrata) | 1.56e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.56e-18 | 23 |
hippocampal neuron | 7.25e-13 | 3 |
neuron | 7.47e-13 | 33 |
neuronal stem cell | 7.47e-13 | 33 |
neuroblast | 7.47e-13 | 33 |
electrically signaling cell | 7.47e-13 | 33 |
granule cell | 1.09e-12 | 3 |
electrically responsive cell | 7.80e-11 | 39 |
electrically active cell | 7.80e-11 | 39 |
neural cell | 8.47e-10 | 43 |
ectodermal cell | 1.44e-09 | 44 |
neurectodermal cell | 1.44e-09 | 44 |
neuron of cerebral cortex | 6.99e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ventral horn of spinal cord | 6.99e-27 | 3 |
regional part of spinal cord | 1.96e-16 | 5 |
gray matter of spinal cord | 1.96e-16 | 5 |
spinal cord | 8.25e-14 | 6 |
dorsal region element | 8.25e-14 | 6 |
dorsum | 8.25e-14 | 6 |
gray matter | 2.42e-12 | 34 |
central nervous system | 1.42e-11 | 73 |
nervous system | 2.99e-11 | 75 |
ectoderm-derived structure | 9.21e-09 | 95 |
ectoderm | 9.21e-09 | 95 |
presumptive ectoderm | 9.21e-09 | 95 |
neural tube | 5.79e-08 | 52 |
neural rod | 5.79e-08 | 52 |
future spinal cord | 5.79e-08 | 52 |
neural keel | 5.79e-08 | 52 |
regional part of nervous system | 1.18e-07 | 54 |
posterior neural tube | 3.34e-07 | 12 |
chordal neural plate | 3.34e-07 | 12 |