FFCP PHASE1:Mm9::chr12:110843236..110843239,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2024 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:110843236..110843239,+ | |||
|description=CAGE_peak_at_chr12:110843236..110843239,+ | |description=CAGE_peak_at_chr12:110843236..110843239,+ | ||
|id=chr12:110843236..110843239,+ | |id=chr12:110843236..110843239,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.10e-42!23;CL:0000337!1.10e-42!23;CL:0000393!3.89e-32!39;CL:0000211!3.89e-32!39;CL:0000540!1.13e-31!33;CL:0000047!1.13e-31!33;CL:0000031!1.13e-31!33;CL:0000404!1.13e-31!33;CL:0000221!2.31e-30!44;CL:0000133!2.31e-30!44;CL:0000055!8.90e-29!50;CL:0002319!2.69e-28!43;CL:0002321!5.14e-21!70;CL:0000220!5.14e-21!70;CL:0000723!4.88e-11!91;CL:0000048!4.88e-11!91;CL:0000548!9.85e-11!115;CL:0000004!9.85e-11!115;CL:0000255!9.85e-11!115;CL:0002612!2.40e-10!3;CL:0002371!2.52e-10!118;CL:0000034!4.64e-10!97;CL:0000144!6.14e-10!121;CL:0000012!6.14e-10!121;CL:0002613!1.14e-09!3;CL:0002610!3.04e-09!3;CL:0002609!2.82e-07!6;CL:0002611!5.79e-07!2 | |ontology_enrichment_celltype=CL:0000117!1.10e-42!23;CL:0000337!1.10e-42!23;CL:0000393!3.89e-32!39;CL:0000211!3.89e-32!39;CL:0000540!1.13e-31!33;CL:0000047!1.13e-31!33;CL:0000031!1.13e-31!33;CL:0000404!1.13e-31!33;CL:0000221!2.31e-30!44;CL:0000133!2.31e-30!44;CL:0000055!8.90e-29!50;CL:0002319!2.69e-28!43;CL:0002321!5.14e-21!70;CL:0000220!5.14e-21!70;CL:0000723!4.88e-11!91;CL:0000048!4.88e-11!91;CL:0000548!9.85e-11!115;CL:0000004!9.85e-11!115;CL:0000255!9.85e-11!115;CL:0002612!2.40e-10!3;CL:0002371!2.52e-10!118;CL:0000034!4.64e-10!97;CL:0000144!6.14e-10!121;CL:0000012!6.14e-10!121;CL:0002613!1.14e-09!3;CL:0002610!3.04e-09!3;CL:0002609!2.82e-07!6;CL:0002611!5.79e-07!2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002612,7.89e-34,3;CL:0000117,2.59e-30,23;CL:0000337,2.59e-30,23;CL:0000540,3.59e-21,33;CL:0000047,3.59e-21,33;CL:0000031,3.59e-21,33;CL:0000404,3.59e-21,33;CL:0000393,6.32e-18,39;CL:0000211,6.32e-18,39;CL:0002319,2.91e-16,43;CL:0000221,6.80e-16,44;CL:0000133,6.80e-16,44;CL:0002614,1.23e-15,3;CL:0002321,5.63e-10,70;CL:0000723,1.22e-07,91;CL:0000048,1.22e-07,91;CL:0000034,3.71e-07,97 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.06e-15!75;UBERON:0001016!1.06e-15!75;UBERON:0001948!1.12e-15!5;UBERON:0002315!1.12e-15!5;UBERON:0001017!9.44e-15!73;UBERON:0005743!9.44e-15!73;UBERON:0002020!2.86e-14!34;UBERON:0002240!5.29e-13!6;UBERON:0005174!5.29e-13!6;UBERON:0001137!5.29e-13!6;UBERON:0004121!2.00e-11!102;UBERON:0000924!2.00e-11!102;UBERON:0006601!2.00e-11!102;UBERON:0002257!2.40e-10!3;UBERON:0001049!1.34e-09!52;UBERON:0005068!1.34e-09!52;UBERON:0006241!1.34e-09!52;UBERON:0007135!1.34e-09!52;UBERON:0002420!1.70e-09!8;UBERON:0007245!1.70e-09!8;UBERON:0010009!1.70e-09!8;UBERON:0010011!1.70e-09!8;UBERON:0000454!1.70e-09!8;UBERON:0004684!3.04e-09!3;UBERON:0002275!3.04e-09!3;UBERON:0003076!1.32e-08!12;UBERON:0003057!1.32e-08!12;UBERON:0002616!3.02e-07!49;UBERON:0002346!3.48e-07!71;UBERON:0003075!3.48e-07!71;UBERON:0007284!3.48e-07!71;UBERON:0000955!4.75e-07!50;UBERON:0006238!4.75e-07!50;UBERON:0002256!5.79e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002257,7.89e-34,3;UBERON:0001948,1.22e-20,5;UBERON:0002315,1.22e-20,5;UBERON:0002240,2.49e-17,6;UBERON:0005174,2.49e-17,6;UBERON:0001137,2.49e-17,6;UBERON:0002038,1.23e-15,3;UBERON:0009663,1.23e-15,3;UBERON:0009661,1.23e-15,3;UBERON:0000125,1.23e-15,3;UBERON:0002308,1.23e-15,3;UBERON:0002420,6.76e-13,8;UBERON:0007245,6.76e-13,8;UBERON:0010009,6.76e-13,8;UBERON:0010011,6.76e-13,8;UBERON:0000454,6.76e-13,8;UBERON:0002950,5.57e-12,4;UBERON:0001891,5.57e-12,4;UBERON:0009616,5.57e-12,4;UBERON:0010286,5.57e-12,4;UBERON:0002020,1.00e-11,34;UBERON:0000073,6.33e-10,54;UBERON:0001017,1.46e-09,73;UBERON:0001016,2.65e-09,75;UBERON:0003076,5.23e-09,12;UBERON:0003057,5.23e-09,12;UBERON:0001049,1.13e-07,52;UBERON:0005068,1.13e-07,52;UBERON:0006241,1.13e-07,52;UBERON:0007135,1.13e-07,52;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0.573066879877513,0,0.202316460859598,1.5869729378161,0,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,0.571301968807607,0.883474163806454,0.489963196859816,0.191690942036473,0,1.10115880999389,0.127687338085188,0.614426133024974,1.05509030184155,0.731901148819277,0.52091337055676,0,1.12552522006336,1.83357897332172,1.76777151284201,2.27794689278565,1.3047961207771,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0.188626341386076,0,0,0.0574354689556133,0,0,0,0.412085900803307,0,0,0,0,0,0,0,0.182927972872773,0,0,0,0.237270036248348,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0.573066879877513,0,0.202316460859598,1.5869729378161,0,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,0.571301968807607,0.883474163806454,0.489963196859816,0.191690942036473,0,1.10115880999389,0.127687338085188,0.614426133024974,1.05509030184155,0.731901148819277,0.52091337055676,0,1.12552522006336,1.83357897332172,1.76777151284201,2.27794689278565,1.3047961207771,0,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0.188626341386076,0,0,0.0574354689556133,0,0,0,0.412085900803307,0,0,0,0,0,0,0,0.182927972872773,0,0,0,0.237270036248348,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:110843236..110843239,+ | |short_description=p@chr12:110843236..110843239,+ | ||
}} | }} |
Latest revision as of 17:24, 4 August 2015
Short description: | p@chr12:110843236..110843239, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:110843236..110843239, + |
Coexpression cluster: | MCL_coexpression_mm9:2024 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 7.89e-34 | 3 |
CNS neuron (sensu Vertebrata) | 2.59e-30 | 23 |
neuroblast (sensu Vertebrata) | 2.59e-30 | 23 |
neuron | 3.59e-21 | 33 |
neuronal stem cell | 3.59e-21 | 33 |
neuroblast | 3.59e-21 | 33 |
electrically signaling cell | 3.59e-21 | 33 |
electrically responsive cell | 6.32e-18 | 39 |
electrically active cell | 6.32e-18 | 39 |
neural cell | 2.91e-16 | 43 |
ectodermal cell | 6.80e-16 | 44 |
neurectodermal cell | 6.80e-16 | 44 |
neuron of the substantia nigra | 1.23e-15 | 3 |
embryonic cell | 5.63e-10 | 70 |
somatic stem cell | 1.22e-07 | 91 |
multi fate stem cell | 1.22e-07 | 91 |
stem cell | 3.71e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
ventral horn of spinal cord | 7.89e-34 | 3 |
regional part of spinal cord | 1.22e-20 | 5 |
gray matter of spinal cord | 1.22e-20 | 5 |
spinal cord | 2.49e-17 | 6 |
dorsal region element | 2.49e-17 | 6 |
dorsum | 2.49e-17 | 6 |
substantia nigra | 1.23e-15 | 3 |
telencephalic nucleus | 1.23e-15 | 3 |
midbrain nucleus | 1.23e-15 | 3 |
neural nucleus | 1.23e-15 | 3 |
nucleus of brain | 1.23e-15 | 3 |
basal ganglion | 6.76e-13 | 8 |
nuclear complex of neuraxis | 6.76e-13 | 8 |
aggregate regional part of brain | 6.76e-13 | 8 |
collection of basal ganglia | 6.76e-13 | 8 |
cerebral subcortex | 6.76e-13 | 8 |
regional part of midbrain | 5.57e-12 | 4 |
midbrain | 5.57e-12 | 4 |
presumptive midbrain | 5.57e-12 | 4 |
midbrain neural tube | 5.57e-12 | 4 |
gray matter | 1.00e-11 | 34 |
regional part of nervous system | 6.33e-10 | 54 |
central nervous system | 1.46e-09 | 73 |
nervous system | 2.65e-09 | 75 |
posterior neural tube | 5.23e-09 | 12 |
chordal neural plate | 5.23e-09 | 12 |
neural tube | 1.13e-07 | 52 |
neural rod | 1.13e-07 | 52 |
future spinal cord | 1.13e-07 | 52 |
neural keel | 1.13e-07 | 52 |
ectoderm-derived structure | 2.60e-07 | 95 |
ectoderm | 2.60e-07 | 95 |
presumptive ectoderm | 2.60e-07 | 95 |