FFCP PHASE1:Mm9::chr5:22251936..22251948,+: Difference between revisions
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{{FFCP|EntrezGene=269629|HGNC=|MCL_coexpression_id=428|UniProt=D3Z3S3,E9QN56,Q9CTN8|association_with_transcript=-62bp_to_ENSMUST00000073678,ENSMUST00000115141,NM_001081231,NM_029990,uc008wpv.2,uc012dst.1_5end|description=CAGE_peak_5_at_Lhfpl3_5end|id=chr5:22251936..22251948,+|ontology_enrichment_celltype=CL:0000117!4.20e-13!23;CL:0000337!4.20e-13!23;CL:0000540!2.68e-12!33;CL:0000047!2.68e-12!33;CL:0000031!2.68e-12!33;CL:0000404!2.68e-12!33;CL:0002319!5.33e-11!43;CL:0000221!1.42e-10!44;CL:0000133!1.42e-10!44;CL:0000393!2.37e-09!39;CL:0000211!2.37e-09!39;CL:0000055!2.09e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,6.26e-13,23;CL:0000337,6.26e-13,23;CL:0000540,1.07e-11,33;CL:0000047,1.07e-11,33;CL:0000031,1.07e-11,33;CL:0000404,1.07e-11,33;CL:0002319,1.73e-11,43;CL:0000221,3.73e-11,44;CL:0000133,3.73e-11,44;CL:0000393,1.77e-09,39;CL:0000211,1.77e-09,39;CL:0002614,3.82e-09,3;CL:0002610,4.34e-09,3;CL:0002611,2.29e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.97e-26!73;UBERON:0005743!1.97e-26!73;UBERON:0000073!2.63e-25!75;UBERON:0001016!2.63e-25!75;UBERON:0004121!1.08e-21!102;UBERON:0000924!1.08e-21!102;UBERON:0006601!1.08e-21!102;UBERON:0001049!4.27e-19!52;UBERON:0005068!4.27e-19!52;UBERON:0006241!4.27e-19!52;UBERON:0007135!4.27e-19!52;UBERON:0002346!1.74e-18!71;UBERON:0003075!1.74e-18!71;UBERON:0007284!1.74e-18!71;UBERON:0000955!2.57e-17!50;UBERON:0006238!2.57e-17!50;UBERON:0002020!2.14e-16!34;UBERON:0000033!2.26e-16!63;UBERON:0002616!2.75e-16!49;UBERON:0003056!2.60e-12!49;UBERON:0002791!1.47e-11!29;UBERON:0003528!1.47e-11!29;UBERON:0001893!1.47e-11!29;UBERON:0003080!2.61e-11!40;UBERON:0002780!2.09e-10!39;UBERON:0001890!2.09e-10!39;UBERON:0006240!2.09e-10!39;UBERON:0003076!1.93e-09!12;UBERON:0003057!1.93e-09!12;UBERON:0007811!5.61e-09!86;UBERON:0002298!3.79e-08!6;UBERON:0002240!4.86e-08!6;UBERON:0005174!4.86e-08!6;UBERON:0001137!4.86e-08!6;UBERON:0000153!2.45e-07!94;UBERON:0001948!5.39e-07!5;UBERON:0002315!5.39e-07!5;UBERON:0000956!9.57e-07!21;UBERON:0001869!9.57e-07!21;UBERON:0000203!9.57e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.19e-33,73;UBERON:0001016,1.34e-32,75;UBERON:0000073,2.36e-27,54;UBERON:0004121,1.70e-24,95;UBERON:0000924,1.70e-24,95;UBERON:0006601,1.70e-24,95;UBERON:0001049,1.36e-23,52;UBERON:0005068,1.36e-23,52;UBERON:0006241,1.36e-23,52;UBERON:0007135,1.36e-23,52;UBERON:0002346,3.12e-18,64;UBERON:0003075,3.12e-18,64;UBERON:0007284,3.12e-18,64;UBERON:0000955,2.61e-17,47;UBERON:0006238,2.61e-17,47;UBERON:0003076,6.82e-17,12;UBERON:0003057,6.82e-17,12;UBERON:0002616,1.34e-15,46;UBERON:0002020,2.13e-15,34;UBERON:0010371,2.29e-15,73;UBERON:0002950,6.20e-12,4;UBERON:0001891,6.20e-12,4;UBERON:0009616,6.20e-12,4;UBERON:0010286,6.20e-12,4;UBERON:0002240,7.96e-12,6;UBERON:0005174,7.96e-12,6;UBERON:0001137,7.96e-12,6;UBERON:0010314,3.68e-11,92;UBERON:0003080,6.31e-11,40;UBERON:0001948,1.58e-09,5;UBERON:0002315,1.58e-09,5;UBERON:0002780,1.70e-09,39;UBERON:0001890,1.70e-09,39;UBERON:0006240,1.70e-09,39;UBERON:0002021,1.83e-09,10;UBERON:0000411,1.83e-09,10;UBERON:0001950,1.83e-09,10;UBERON:0003528,1.87e-09,29;UBERON:0002791,1.87e-09,29;UBERON:0001893,1.87e-09,29;UBERON:0002038,3.82e-09,3;UBERON:0009663,3.82e-09,3;UBERON:0009661,3.82e-09,3;UBERON:0000125,3.82e-09,3;UBERON:0002308,3.82e-09,3;UBERON:0004684,4.34e-09,3;UBERON:0002275,4.34e-09,3;UBERON:0011216,7.11e-09,194;UBERON:0003056,2.25e-08,49;UBERON:0000025,4.74e-08,114;UBERON:0002256,2.29e-07,2;UBERON:0004111,3.35e-07,122;UBERON:0004733,5.94e-07,6;UBERON:0004732,5.94e-07,6;UBERON:0002028,5.94e-07,6;UBERON:0007277,5.94e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,2.11596391708813,0,0,0,0,0,0,2.69640099466564,1.53687322128622,0,0.135005938331691,0,4.57041575046086,4.41737081903227,0.244981598429908,0.575072826109418,0,2.20231761998777,2.17068474744819,1.99688493233117,0.131886287730194,0.365950574409639,0,2.51264699101243,2.25105044012672,1.68078072554491,1.17851434189467,2.13557521198654,0.931997229126503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,1.17112318804619,1.25668024088073,0,0,0,0,2.99581278809645,0.915001205637253,1.38219787324151,2.08589184230732,1.02286182932132,2.49345653471472,2.92034273521964,0.101839363850316,0,0,0,0.130120442962704,0,0,0.150704817835715,0.272145996605311,0.384341160854549,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,0.92614151141356,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28440471990234,1.87538698547525,0,0,0,0.390438744296638,0,1.19484398976276,0.668396022247182,1.41538265394416,0,0,0,3.85585579706168,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0.0603129249281559,0,0,0,1.8542530201051,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0.149516546043979,0.165458490457098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,2.76195141904306,1.14579102687879,0.171853182343688,0,2.2661816921691,1.35004500046361,0,1.81256963593682,0,0,0,0.170733605754134,0,0,0,0.222246727801615,0,0,0.505394423527595,0,0,0.280924522409647,0.384150914429216,0.114870937911227,0,0.347652977834566,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0.238436189947321,0,0,0,0.182927972872773,0,0.271608227691724,0,0.118635018124174,0.197008964751127,0,0,0.192906610981141,0.499621155875892,0.467863216890817,0,0,0.441182838239031,0|short_description=p5@Lhfpl3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:269629 | |||
|HGNC= | |||
|MCL_coexpression_id=428 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3Z3S3,uniprot:E9QN56,uniprot:Q9CTN8 | |||
|association_with_transcript=-62bp_to_ENSMUST00000073678,ENSMUST00000115141,NM_001081231,NM_029990,uc008wpv.2,uc012dst.1_5end | |||
|cluster_id=chr5:22251936..22251948,+ | |||
|description=CAGE_peak_5_at_Lhfpl3_5end | |||
|id=chr5:22251936..22251948,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.20e-13!23;CL:0000337!4.20e-13!23;CL:0000540!2.68e-12!33;CL:0000047!2.68e-12!33;CL:0000031!2.68e-12!33;CL:0000404!2.68e-12!33;CL:0002319!5.33e-11!43;CL:0000221!1.42e-10!44;CL:0000133!1.42e-10!44;CL:0000393!2.37e-09!39;CL:0000211!2.37e-09!39;CL:0000055!2.09e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.26e-13,23;CL:0000337,6.26e-13,23;CL:0000540,1.07e-11,33;CL:0000047,1.07e-11,33;CL:0000031,1.07e-11,33;CL:0000404,1.07e-11,33;CL:0002319,1.73e-11,43;CL:0000221,3.73e-11,44;CL:0000133,3.73e-11,44;CL:0000393,1.77e-09,39;CL:0000211,1.77e-09,39;CL:0002614,3.82e-09,3;CL:0002610,4.34e-09,3;CL:0002611,2.29e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.97e-26!73;UBERON:0005743!1.97e-26!73;UBERON:0000073!2.63e-25!75;UBERON:0001016!2.63e-25!75;UBERON:0004121!1.08e-21!102;UBERON:0000924!1.08e-21!102;UBERON:0006601!1.08e-21!102;UBERON:0001049!4.27e-19!52;UBERON:0005068!4.27e-19!52;UBERON:0006241!4.27e-19!52;UBERON:0007135!4.27e-19!52;UBERON:0002346!1.74e-18!71;UBERON:0003075!1.74e-18!71;UBERON:0007284!1.74e-18!71;UBERON:0000955!2.57e-17!50;UBERON:0006238!2.57e-17!50;UBERON:0002020!2.14e-16!34;UBERON:0000033!2.26e-16!63;UBERON:0002616!2.75e-16!49;UBERON:0003056!2.60e-12!49;UBERON:0002791!1.47e-11!29;UBERON:0003528!1.47e-11!29;UBERON:0001893!1.47e-11!29;UBERON:0003080!2.61e-11!40;UBERON:0002780!2.09e-10!39;UBERON:0001890!2.09e-10!39;UBERON:0006240!2.09e-10!39;UBERON:0003076!1.93e-09!12;UBERON:0003057!1.93e-09!12;UBERON:0007811!5.61e-09!86;UBERON:0002298!3.79e-08!6;UBERON:0002240!4.86e-08!6;UBERON:0005174!4.86e-08!6;UBERON:0001137!4.86e-08!6;UBERON:0000153!2.45e-07!94;UBERON:0001948!5.39e-07!5;UBERON:0002315!5.39e-07!5;UBERON:0000956!9.57e-07!21;UBERON:0001869!9.57e-07!21;UBERON:0000203!9.57e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.19e-33,73;UBERON:0001016,1.34e-32,75;UBERON:0000073,2.36e-27,54;UBERON:0004121,1.70e-24,95;UBERON:0000924,1.70e-24,95;UBERON:0006601,1.70e-24,95;UBERON:0001049,1.36e-23,52;UBERON:0005068,1.36e-23,52;UBERON:0006241,1.36e-23,52;UBERON:0007135,1.36e-23,52;UBERON:0002346,3.12e-18,64;UBERON:0003075,3.12e-18,64;UBERON:0007284,3.12e-18,64;UBERON:0000955,2.61e-17,47;UBERON:0006238,2.61e-17,47;UBERON:0003076,6.82e-17,12;UBERON:0003057,6.82e-17,12;UBERON:0002616,1.34e-15,46;UBERON:0002020,2.13e-15,34;UBERON:0010371,2.29e-15,73;UBERON:0002950,6.20e-12,4;UBERON:0001891,6.20e-12,4;UBERON:0009616,6.20e-12,4;UBERON:0010286,6.20e-12,4;UBERON:0002240,7.96e-12,6;UBERON:0005174,7.96e-12,6;UBERON:0001137,7.96e-12,6;UBERON:0010314,3.68e-11,92;UBERON:0003080,6.31e-11,40;UBERON:0001948,1.58e-09,5;UBERON:0002315,1.58e-09,5;UBERON:0002780,1.70e-09,39;UBERON:0001890,1.70e-09,39;UBERON:0006240,1.70e-09,39;UBERON:0002021,1.83e-09,10;UBERON:0000411,1.83e-09,10;UBERON:0001950,1.83e-09,10;UBERON:0003528,1.87e-09,29;UBERON:0002791,1.87e-09,29;UBERON:0001893,1.87e-09,29;UBERON:0002038,3.82e-09,3;UBERON:0009663,3.82e-09,3;UBERON:0009661,3.82e-09,3;UBERON:0000125,3.82e-09,3;UBERON:0002308,3.82e-09,3;UBERON:0004684,4.34e-09,3;UBERON:0002275,4.34e-09,3;UBERON:0011216,7.11e-09,194;UBERON:0003056,2.25e-08,49;UBERON:0000025,4.74e-08,114;UBERON:0002256,2.29e-07,2;UBERON:0004111,3.35e-07,122;UBERON:0004733,5.94e-07,6;UBERON:0004732,5.94e-07,6;UBERON:0002028,5.94e-07,6;UBERON:0007277,5.94e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,2.11596391708813,0,0,0,0,0,0,2.69640099466564,1.53687322128622,0,0.135005938331691,0,4.57041575046086,4.41737081903227,0.244981598429908,0.575072826109418,0,2.20231761998777,2.17068474744819,1.99688493233117,0.131886287730194,0.365950574409639,0,2.51264699101243,2.25105044012672,1.68078072554491,1.17851434189467,2.13557521198654,0.931997229126503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,1.17112318804619,1.25668024088073,0,0,0,0,2.99581278809645,0.915001205637253,1.38219787324151,2.08589184230732,1.02286182932132,2.49345653471472,2.92034273521964,0.101839363850316,0,0,0,0.130120442962704,0,0,0.150704817835715,0.272145996605311,0.384341160854549,0.187403449119458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,0.92614151141356,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28440471990234,1.87538698547525,0,0,0,0.390438744296638,0,1.19484398976276,0.668396022247182,1.41538265394416,0,0,0,3.85585579706168,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0.0603129249281559,0,0,0,1.8542530201051,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0.149516546043979,0.165458490457098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,2.76195141904306,1.14579102687879,0.171853182343688,0,2.2661816921691,1.35004500046361,0,1.81256963593682,0,0,0,0.170733605754134,0,0,0,0.222246727801615,0,0,0.505394423527595,0,0,0.280924522409647,0.384150914429216,0.114870937911227,0,0.347652977834566,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0.238436189947321,0,0,0,0.182927972872773,0,0.271608227691724,0,0.118635018124174,0.197008964751127,0,0,0.192906610981141,0.499621155875892,0.467863216890817,0,0,0.441182838239031,0 | |||
|short_description=p5@Lhfpl3 | |||
}} |
Revision as of 04:31, 4 August 2015
Short description: | p5@Lhfpl3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lhfpl3_5end |
Coexpression cluster: | MCL_coexpression_mm9:428 |
Association with transcript: | -62bp_to_ENSMUST00000073678, ENSMUST00000115141, NM_001081231, NM_029990, uc008wpv.2, uc012dst.1_5end |
EntrezGene: | 269629 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.26e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.26e-13 | 23 |
neuron | 1.07e-11 | 33 |
neuronal stem cell | 1.07e-11 | 33 |
neuroblast | 1.07e-11 | 33 |
electrically signaling cell | 1.07e-11 | 33 |
neural cell | 1.73e-11 | 43 |
ectodermal cell | 3.73e-11 | 44 |
neurectodermal cell | 3.73e-11 | 44 |
electrically responsive cell | 1.77e-09 | 39 |
electrically active cell | 1.77e-09 | 39 |
neuron of the substantia nigra | 3.82e-09 | 3 |
raphe nuclei neuron | 4.34e-09 | 3 |
neuron of the dorsal spinal cord | 2.29e-07 | 2 |